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v0.22.7 (2024-07-26)

Fix

  • logical vs physical plan mismatch (#162)

v0.22.6 (2024-07-22)

v0.22.5 (2024-07-16)

Feat

  • add sdf read options (#161)
  • add bed file option inference (#156)
  • add gff file extension and compression inference (#155)

v0.22.4 (2024-06-21)

Feat

  • infer options from file name (#153)

v0.22.3 (2024-06-20)

Fix

  • add FastaSequenceDataType import (#151)

v0.22.2 (2024-06-18)

v0.22.1 (2024-06-17)

v0.22.0 (2024-06-14)

Feat

  • support more bed options (#146)

v0.21.2 (2024-05-30)

v0.21.1 (2024-05-30)

v0.21.0 (2024-05-30)

Feat

  • update FASTA for encoding and copy (#139)

v0.20.3 (2024-05-23)

v0.20.2 (2024-05-21)

Fix

  • new exon to fix overflow (#135)

v0.20.1 (2024-05-16)

Refactor

  • simplify bounds

v0.20.0 (2024-04-24)

Feat

  • improve vcf table options (#128)

v0.19.6 (2024-04-24)

Fix

  • better annotations

v0.19.5 (2024-04-23)

Fix

  • update other parts of build

v0.19.4 (2024-04-23)

Fix

  • update other parts of build

v0.19.3 (2024-04-23)

Fix

  • update version

v0.19.2 (2024-04-23)

Fix

  • update version

v0.19.1 (2024-04-23)

Fix

  • update python versions

v0.19.0 (2024-04-23)

Feat

  • add cram and fcs (#127)
  • add bed and bigwig (#124)
  • add bam and sam reader methods (#123)
  • add vcf read (#121)
  • add type annotations (#120)

Refactor

  • better obj creation (#117)

v0.18.0 (2024-03-27)

v0.17.16 (2024-03-21)

v0.17.15 (2024-03-20)

v0.17.14 (2024-03-20)

v0.17.13 (2024-03-20)

v0.17.12 (2024-03-20)

v0.17.11 (2024-03-20)

v0.17.10 (2024-03-10)

Feat

  • update exon to v13

v0.17.9 (2024-03-10)

v0.17.8 (2024-03-10)

v0.17.7 (2024-03-10)

v0.17.6 (2024-03-10)

v0.17.5 (2024-03-10)

v0.17.4 (2024-03-10)

v0.17.3 (2024-03-10)

v0.17.2 (2024-03-10)

v0.17.1 (2024-03-10)

v0.17.0 (2024-03-10)

Feat

  • update exon to v0.12 (#107)

v0.16.0 (2024-03-03)

Feat

  • add fastq/fasta reader on a session (#105)

v0.15.3 (2024-02-26)

v0.15.2 (2024-02-26)

v0.15.1 (2024-02-26)

v0.15.0 (2024-02-25)

Feat

  • fix value error for missing file (#92)

v0.14.6 (2024-01-28)

Fix

  • fix version (#91)

v0.14.5 (2024-01-27)

Fix

  • update exon to support bgzip (#90)

v0.14.4 (2024-01-26)

v0.14.3 (2024-01-25)

v0.14.2 (2024-01-24)

v0.14.1 (2024-01-10)

v0.14.0 (2024-01-02)

v0.13.14 (2023-12-19)

v0.13.13 (2023-12-06)

Feat

  • add execute method on session (#77)
  • add back record batch reader (#76)

v0.13.12 (2023-11-29)

v0.13.11 (2023-11-20)

v0.13.10 (2023-11-09)

v0.13.9 (2023-11-06)

v0.13.8 (2023-10-21)

v0.13.7 (2023-10-14)

Feat

  • update README with session example

v0.13.6 (2023-10-13)

Feat

  • improve df creation (#64)

v0.13.5 (2023-10-11)

Feat

  • add baack armv7

v0.13.4 (2023-10-11)

v0.13.3 (2023-10-11)

v0.13.2 (2023-10-11)

v0.13.1 (2023-10-10)

Feat

  • update exon beta

v0.13.0 (2023-10-10)

Feat

  • build remove extra opt

v0.12.0 (2023-10-10)

Feat

  • use 0.3.4 (#63)

v0.11.0 (2023-10-10)

Feat

  • add to_polars for result (#62)
  • session context (#59)

v0.10.1 (2023-09-22)

v0.10.0 (2023-09-13)

Feat

  • update exon version (#56)

v0.9.1 (2023-08-01)

Feat

  • add to_pandas (#51)

v0.8.0 (2023-07-31)

Feat

  • update exon for faster scans (#50)
  • add conda forge to bb test (#48)
  • IC for mzml in biobear (#46)

v0.7.4 (2023-07-13)

v0.7.3 (2023-07-13)

v0.7.2 (2023-07-13)

v0.7.1 (2023-07-11)

Feat

  • bump exon

v0.7.0 (2023-07-10)

Feat

  • add exhausted check to avoid panic (#43)
  • update exon (#42)

v0.6.3 (2023-07-03)

Fix

  • fix filename

Refactor

  • cleanup interface (#34)

v0.6.2 (2023-06-20)

Feat

  • add bcf query reader (#33)

v0.6.1 (2023-06-19)

Feat

  • add GTF table source (#32)

v0.6.0 (2023-06-15)

Feat

  • add s3 and gcs readers (#30)

v0.5.0 (2023-06-14)

Feat

  • add querying (#29)
  • gzip for genbank reader (#28)
  • use exon reader (#27)

Refactor

  • path type (#26)

v0.4.0 (2023-04-30)

Feat

  • add genbank + better gff (#24)

v0.3.0 (2023-04-27)

Feat

  • add gff gzip reader (#23)
  • turn vcf reader into record batch reader (#21)
  • add fastq reader (#20)
  • bam reader as record batch (#19)
  • use record batch reader for gff (#18)
  • replace IPC with RecordBatchReader for fasta (#16)
  • clean-up batch serialization (#14)
  • update similar
  • add similar packages to README
  • add smoke test

Fix

  • pare to minimal smoke test
  • windows pipes
  • trailing space

Refactor

  • remove to arrow functions (#22)
  • cleanup fasta reader (#17)

v0.2.0 (2023-04-24)

Feat

  • support gzipped for fasta/q (#4)
  • add error handling (#1)

v0.1.6 (2023-04-22)

Feat

  • clean up readme

Refactor

  • update tests docs

v0.1.5 (2023-04-22)

Feat

  • add readers

v0.1.4 (2023-04-22)

Feat

  • proper tag setup

v0.1.3 (2023-04-22)

Feat

  • update with docs

v0.1.2 (2023-04-22)

v0.1.1 (2023-04-22)

Feat

  • add python lib separately
  • add python wrapper
  • add bam and vcf readers
  • add reader
  • ic