DESCRIPTION

Package: CytoSimplex
Type: Package
Title: Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Version: 0.1.99
Authors@R: c(
    person(given = 'Yichen', family = 'Wang', email = 'wayichen@umich.edu', 
           role = c('aut', 'cre'), comment = c(ORCID = "0000-0003-4347-5199")),
    person(given = 'Jialin', family = 'Liu', email = 'alanliu@umich.edu', 
           role = c('aut'), comment = c(ORCID = "0000-0002-9984-7695")),
    person(given = 'Joshua', family = 'Welch', email = 'welchjd@umich.edu', 
           role = c('cph'))
  )
Maintainer: Yichen Wang <wayichen@umich.edu>
Description: Create simplex plots to visualize the similarity between 
    single-cells and selected clusters in a 1-/2-/3-simplex space.
    Velocity information can be added as an additional layer. 
    See Liu J, Wang Y et al (2023) <doi:10.1101/2023.12.07.570655> for more details.
URL: https://welch-lab.github.io/CytoSimplex/, https://github.com/welch-lab/CytoSimplex
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
    stats,
    methods,
    grDevices,
    R (>= 3.6)
LinkingTo: Rcpp, RcppArmadillo
biocViews:
Imports:
    cli,
    ggplot2,
    Matrix,
    plot3D,
    plotly,
    RColorBrewer,
    Rcpp,
    rlang,
    viridis
Suggests:
    hdf5r,
    knitr,
    magick,
    patchwork,
    rmarkdown,
    Seurat,
    SeuratObject,
    SingleCellExperiment,
    SummarizedExperiment,
    testthat (>= 3.0.0)
RoxygenNote: 7.3.1
Config/testthat/edition: 3
VignetteBuilder: knitr