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Running SPLICE-q without the outfile arg leads to an error #2

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matdoering opened this issue Jul 8, 2021 · 0 comments

matdoering commented Jul 8, 2021

Call:

SPLICE-q.py -b /mnt/data/input/sample1.bam -g /mnt/data/reference/homo_sapiens/GRCh38/gencode.v38.chr_patch_hapl_scaff.annotation.gtf

Traceback (most recent call last):
  File "/usr/local/bin/SPLICE-q.py", line 776, in <module>
    main()
  File "/usr/local/bin/SPLICE-q.py", line 510, in main
    main_nocoverage(parser)
  File "/usr/local/bin/SPLICE-q.py", line 576, in main_nocoverage
    if len(outfilename) == 0:
TypeError: object of type 'NoneType' has no len()

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