vitessce-r

R API and htmlwidget facilitating interactive visualization of spatial single-cell data with Vitessce.

Installation

Installation requires R 4.0.0 or greater.

install.packages("devtools")
devtools::install_github("vitessce/vitessceR")

library(vitessceR)

vc <- VitessceConfig$new()
vc$widget()

For full examples, visit the documentation.

For questions and help with using the package, please open a discussion.

npm install
npm run build

setwd("path/to/vitessceR")
install.packages("htmlwidgets")
install.packages("devtools")
devtools::install()
devtools::load_all()

devtools::check()
devtools::test()

install.packages("devtools")
install.packages("pkgdown")
devtools::document()
pkgdown::build_site()

Documentation is automatically deployed to GitHub pages with GitHub actions.

Currently, the package is only distributed through GitHub. In the future, we plan to submit the package to CRAN or Bioconductor.

To increment the package version, update it in DESCRIPTION.