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---
layout: default
title: VisR
---
<div class="home">
<p>VisR (formerly called VisRseq), is a framework for analysis of sequencing datasets that provides a computationally rich and accessible framework for integrative and interactive analyses without requiring programming expertise.</p>
<p align="middle"> <img src="/images/Interface.png" width="800"> <p>
<h2>Features</h2>
<ul>
<li><b>R Apps</b>:
Offering an auto generated and unified graphical user interface for computational packages in R and repositories such as Bioconductor.
</li>
<li><b>Interactive Apps</b>:
several native apps provide exploration and brushing operations.
</li>
<li><b>Chaining Apps</b>:
The apps can be chained together to create more powerful analysis workflows.
</li>
<li><b>Built-in genome browser integration</b>:
Integrated with the Integrative Genome Viewer (IGV).
</li>
<li><b>Data manipulation</b>:
Creating data tables and processing sequencing data into data columns.
</li>
<li><b>Computations on data columns</b>: Using an excel or R syntax.
</li>
</ul>
<h2>News</h2>
<ul>
<li><i>June 26, 2016</i>: Workshop on creating R-app for VisRseq
at <a href="http://bioconductor.org/help/course-materials/2016/BioC2016/">Bioc2016</a>, Stanford University, CA.
[<a href = "https://github.com/hyounesy/bioc2016.visrseq">package</a>]
[<a href = "https://github.com/hyounesy/bioc2016.visrseq/raw/master/vignettes/bioc2016.visrseq.pdf">vignette</a>]</li>
<li><i>June 2016</i>: VisRseq at the <a href="https://dl.dropboxusercontent.com/u/2869767/VisRseq/epigenomes-ca.png">front page</a> of the Canadian Epigenetics, Environment and Health Research Consortium (CEEHRC) Network <a href="http://www.epigenomes.ca">website</a></li>
<li> <i>May 18, 2016</i>: Invited talk in the visualization session of
<a href="http://www.nationwidechildrens.org/math-conference">
The Third International Conference on Mathematical and Computational Medicine</a>, Columbus, OH
[<a href="https://www.dropbox.com/s/t2cnvstn5iyq7qn/MCM2016_VisRseq_Slides.pdf?dl=1">Slides</a>]
[<a href="https://www.dropbox.com/s/464mn8cidq5ieyy/MCMPoster.pdf?dl=1">Poster</a>]</li>
</ul>
</div>