Version 1.1.1

• updated documentation
• implemented an automatic download of latest singularity containers (guppy 6.3.7) with https URL of files on Drive IRD
• read id list for splitting fast5 files into genome bins is now created with the R script that handles creating genome specific fastq files. Hopefully, this solve occasional problems with fast5_subset from the ont api that failled because of supposedly too long read names. Will ultimately use the ONT POD5 format and tools.
• python scripts interface clarified between slurm and cluster. Documentation indicates that only local and slurm modes will be kept for configure
• created after merge of XoCo branch #5

scratch version

Running on snakemake interface

Tools:

• Guppy 4.0.14 GPU and 3.6.0 CPU version
• Deepbinner 0.2.0
• MinIONQC 1.4.1
• Multiqc 1.8
• Porechop 0.2.4
• Filtlong 0.2.0