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Fix intronic dup prediction issue from DNA11-dbSNP.tsv #28

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holtgrewe opened this issue Mar 2, 2023 · 0 comments
Open

Fix intronic dup prediction issue from DNA11-dbSNP.tsv #28

holtgrewe opened this issue Mar 2, 2023 · 0 comments
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enhancement New feature or request

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@holtgrewe
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holtgrewe commented Mar 2, 2023

The following need fixing:

#rs35803309	NC_000007.13:g.21723128_21723129insT	NM_001277115.2:c.5461-273dupT
#rs35803309	NC_000007.13:g.21723128_21723129insT	NM_003777.3:c.5482-273dupT
#rs146960178	NC_000007.13:g.21723129_21723130insC	NM_001277115.2:c.5461-269dupC
#rs146960178	NC_000007.13:g.21723129_21723130insC	NM_003777.3:c.5482-269dupC
thread 'mapper::variant::test::dnah11_db_snp_full' panicked at 'assertion failed: `(left == right)`: NM_001277115.2:c.5461-274_5461-273insT != NM_001277115.2:c.5461-273dupT (g>t; rs35803309; HGVSg=NC_000007.13:g.21723128_21723129insT)

Diff < left / right > :
<NM_001277115.2:c.5461-273dupT
>NM_001277115.2:c.5461-274_5461-273insT

', src/mapper/variant.rs:1723:13

I commented them out in the TSV file for now.

@holtgrewe holtgrewe added the enhancement New feature or request label Jan 24, 2024
@holtgrewe holtgrewe moved this to To triage in Release Planning Jan 24, 2024
@holtgrewe holtgrewe moved this from To triage to Backlog in Release Planning Jan 24, 2024
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