pestpp continuous integration #1250
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: pestpp continuous integration | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| push: | |
| pull_request: | |
| jobs: | |
| pestppCI: | |
| name: benchmarks | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, ubuntu-latest] | |
| python-version: [3.9] # , 3.7, 3.6] | |
| run-type: [std] | |
| # test_repo: [""] | |
| # test_dir: [""] | |
| # test_script: [""] | |
| # include: | |
| # - test_script: opt_test.py | |
| # - test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks" | |
| # - test_dir: "pestpp-opt_benchmarks" | |
| env: | |
| - { test_dir: "benchmarks", test_repo: "https://github.com/usgs/pestpp", test_script: "basic_tests.py"} | |
| - { test_dir: "pestpp-opt_benchmarks", test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks", test_script: "opt_test.py"} | |
| - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_base.py"} | |
| - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part1.py"} | |
| - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part2.py"} | |
| - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part3.py"} | |
| - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part4.py"} | |
| - { test_dir: "pestpp-glm_benchmarks", test_repo: "https://github.com/pestpp/pestpp-glm_benchmarks", test_script: "glm_test_base.py"} | |
| - { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests.py"} | |
| #- { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"} | |
| - { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "henry_test.py"} | |
| - { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "da_tests.py"} | |
| - { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "lorenz96_tests.py"} | |
| - { test_dir: "pestpp-sqp_benchmarks", test_repo: "https://github.com/pestpp/pestpp-sqp_benchmarks", test_script: "sqp_tests.py"} | |
| include: | |
| - os: ubuntu-latest | |
| env: { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"} | |
| env: ${{ matrix.env }} | |
| steps: | |
| - uses: actions/checkout@v2.3.4 | |
| # - name: Setup Ninja | |
| # if: ${{ runner.os == 'Windows' }} | |
| - uses: seanmiddleditch/gha-setup-ninja@master | |
| # - name: Cache Miniconda | |
| # uses: actions/cache@v2.1.0 | |
| # env: | |
| # # Increase this value to reset cache if environment.yml has changed | |
| # CACHE_NUMBER: 0 | |
| # with: | |
| # path: ~/conda_pkgs_dir | |
| # key: ${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('etc/environment.yml') }} | |
| - name: Set Windows ENV | |
| if: runner.os == 'Windows' | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| # Standard python fails on windows without GDAL installation | |
| # Using custom bash shell ("shell: bash -l {0}") with Miniconda | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # python-version: ${{ matrix.python-version }} | |
| # #mamba-version: "0.20.0" | |
| # channels: conda-forge | |
| # auto-update-conda: true | |
| # activate-environment: pyemu | |
| # use-only-tar-bz2: true | |
| miniforge-version: latest | |
| # miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| # mamba-version: "*" | |
| # channels: conda-forge | |
| miniforge-variant: Mambaforge | |
| # auto-update-conda: true | |
| activate-environment: pyemu | |
| use-mamba: true | |
| # environment-file: etc/environment.yml | |
| # use-only-tar-bz2: true | |
| # - name: Add packages to pyemu environment using mamba or conda | |
| # shell: bash -l {0} | |
| # run: | | |
| # if [ "$RUNNER_OS" == "Windows" ]; then | |
| # conda env update --name pyemu --file etc/environment.yml | |
| # else | |
| # conda env update --name pyemu --file etc/environment.yml | |
| # fi | |
| - name: Add packages to pyemu environment using conda | |
| if: ${{ matrix.python-version < 3.8 }} | |
| # if: ${{ runner.os == 'Windows' || matrix.python-version < 3.8 }} | |
| shell: bash -l {0} | |
| run: | | |
| conda env update --name pyemu --file etc/environment.yml | |
| - name: Add packages to pyemu environment using mamba | |
| # if: ${{ runner.os != 'Windows' && matrix.python-version >= 3.8 }} | |
| if: ${{ matrix.python-version >= 3.8 }} | |
| shell: bash -l {0} | |
| run: | | |
| mamba env update --name pyemu --file etc/environment.yml | |
| - name: Install Flopy & pyemu? | |
| shell: bash -l {0} | |
| run: | | |
| # git clone -b develop --depth 1 https://github.com/modflowpy/flopy.git | |
| # cd flopy | |
| # python setup.py install | |
| # cd .. | |
| # pip install https://github.com/modflowpy/pymake/zipball/master | |
| git clone -b develop --depth 1 https://github.com/pypest/pyemu.git | |
| cd pyemu | |
| python setup.py install | |
| cd .. | |
| # - name: Get specific version CMake, v3.19 | |
| # if: ${{ runner.os == 'Windows' }} | |
| # uses: lukka/get-cmake@latest | |
| - name: clone test repo ${{ env.test_repo }} | |
| shell: bash -l {0} | |
| run: | | |
| git clone ${{ env.test_repo }} | |
| - name: PESTPP exe install | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build && cd build | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| cmake -GNinja -DCMAKE_CXX_COMPILER=cl -DCMAKE_C_COMPILER=cl -DCMAKE_BUILD_TYPE=Release .. | |
| ninja | |
| else | |
| cmake -DCMAKE_BUILD_TYPE=Release .. | |
| make -j2 | |
| fi | |
| cd .. | |
| - name: aux bin path hackery | |
| shell: bash -l {0} | |
| run: | | |
| cp -r benchmarks/test_bin/win $HOME/bin | |
| echo "../../test_bin/win" >> $GITHUB_PATH | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| cp -r benchmarks/test_bin/win $HOME/bin | |
| echo "../../test_bin/win" >> $GITHUB_PATH | |
| else | |
| echo "../../test_bin/linux" >> $GITHUB_PATH | |
| cp -r benchmarks/test_bin/win $HOME/bin | |
| fi | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| - name: run test script ${{ env.test_script }} in ${{ env.test_dir }} | |
| shell: bash -l {0} | |
| run: | | |
| ls -l | |
| cd ${{ env.test_dir }} | |
| nosetests -v ${{ env.test_script }} | |
| cd | |