CancerEvolutionVisualization (CEV) generates tree plots with precise branch lengths, gene annotations, and cellular prevalence. The package handles complex tree structures (angles, lengths, etc.) and can be further refined as needed by the user. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals.
To install the latest public release of CancerEvolutionVisualization from CRAN:
install.packages("CancerEvolutionVisualization")
Or to install the latest development version from GitHub:
# install.packages("devtools")
devtools::install_github("uclahs-cds/package-CancerEvolutionVisualization")
Available resources on CEV usage can be found at the package CRAN page, reference manual, and user guide.
Looking for guidance or support with CEV? Check out our Discussions page.
Submit bugs, suggest new features or see current works at our Issues page.
Pull requests are also open for discussion.
For a full list of contributors please visit the package's page on CRAN
Authors: Adriana Salcedo, Dan Knight, Helena Winata & Paul C. Boutros (PBoutros@mednet.ucla.edu)
CancerEvolutionVisualization is licensed under the GNU General Public License version 2. See the file LICENSE.md for the terms of the GNU GPL license.
CancerEvolutionVisualization is a software package for generating publication-quality, customizable plots.
Copyright (C) 2021-2023 University of California Los Angeles ("Boutros Lab") All rights reserved.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.