2022年卒-備瀬研-荒木健吾
- 3-class classification
- Calculate residual tumor ratio of each WSI
residual tumor ratio: Residual tumor/ (Residual turmor + Tumor bed)
Chemotherapy Whole Slide Image (WSI)
Class:
- Non-Neoplasm
- Tumor bed
- Residual tumor
Extension:
WSI (.ndpi), Annotation file (.xml)
Number of samples:
(March 9th, 2022)
- WSI: 112
- Case (Patient): 55
About ndpi/xml name:
e.g., H〇〇-〇〇〇〇〇_■.ndpi/xml
- H〇〇-〇〇〇〇〇: Case name
- ■: Serial number of the case
- analysis:
To calculate residual tumor ratio - annotation:
To preprocess and visualize annotated area from original WSI (.ndpi)annotation file (.xml) - config:
Config files of experiments (src & src_multi) - environment:
Environment files for this project (Anaconda) - preprocess:
Preprocess for an experiment. Split into patches basis on its annotated class. - src:
Experimet files for single-scale model - src_multi:
Experiment files for multi-scale model - visualize:
To modify a figure