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Use indexed BLAST DB if already exists #124

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Use indexed BLAST DB if already exists #124

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Commits on Jun 25, 2015

  1. Use indexed BLAST DB if already exists 

    Currently, when given the --proteins argument, prokka will automatically create a BLAST indexed database using the makeblastdb command, regardless of whether or not one already exists. This modification will search the directory of the protein database that is supplied by the user to determine whether an indexed database with the same prefix as the fasta file supplied already exists. If it does, prokka will use that instead of creating a new one.
    @cnthornton
    cnthornton committed Jun 25, 2015
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Commits on Jul 2, 2015

  1. Allow the input for the proteins option to be a BLAST database

    @cnthornton
    cnthornton committed Jul 2, 2015
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  2. Remove unnecessary dependency - File::Basename

    @cnthornton
    cnthornton committed Jul 2, 2015
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Commits on Mar 13, 2016

  1. Change the way some attributes are displayed in gff attributes column

    @cnthornton
    cnthornton committed Mar 13, 2016
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  2. Remove database files

    @cnthornton
    cnthornton committed Mar 13, 2016
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Commits on Apr 25, 2016

  1. switch features gene with gene_id

    @cnthornton
    cnthornton committed Apr 25, 2016
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  2. Change gene_id to genefam

    @cnthornton
    cnthornton committed Apr 25, 2016
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Commits on Apr 26, 2016

  1. Remove colliding gene feature

    @cnthornton
    cnthornton committed Apr 26, 2016
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  2. workaround tbl2asn errors

    @cnthornton
    cnthornton committed Apr 26, 2016
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  3. change db directory back

    @cnthornton
    cnthornton committed Apr 26, 2016
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  4. Modify feature from database to inference

    @cnthornton
    cnthornton committed Apr 26, 2016
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  5. change attribute gene_id to gene and attribute to gene_feature

    @cnthornton
    cnthornton committed Apr 26, 2016
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Commits on Oct 6, 2016

  1. Update prokka db location

    @cnthornton
    cnthornton committed Oct 6, 2016
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