PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing

Pipeline for variant annotation using Variant Effect Predictor (VEP)

Annotation pipeline for HPDS

BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.

Pipeline para Anotação de Arquivo VCF de Variantes Somáticas utilizando o Ensembl Variant Effect Predictor (VEP) version 105.0 via Google Colab. O SAVEP_v01.2022 é de código aberto e está disponível no GitHub.

Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)