🍀 Evolutionary optimization library for Go (genetic algorithm, partical swarm optimization, differential evolution)

⚗ A package useful for chemistry written in Python

GAGA is a fast, header only, multi-objective, and distributed evolutionary algorithm library written in modern C++. It is designed to be easily usable with various genotype representations and allows the user to enable or disable several features such as novelty search or speciation. It also produces and exports various customizable statistics.

Code used to analyse WGS data of giraffe in Coimbra et al. 2021

Chemistry toolkit for simulating the aqueous speciation of metal-oxo clusters

A process to better define speciation

Digital evolution model dedicated to bacterial in silico experimental evolution.

A Python package to plot fractional composition diagrams and pH-log c diagrams

An R/C++ package for simulating the evolution of retrotransposons over time.

Neural Evolution of Augmenting Topologies(NEAT) library written in javascript, heavily based on Kenneth O. Stanley's c++ library.

Some models

Code used to analyse WGS data of giraffe in Coimbra et al. 2023

SPurS detects shifts in purifying selection

Working on my deliverables et al. for the Species & Speciation module in my Honours year (run by A/Prof Muthama Muasya)

Simulation of adaptive speciation with complex genotype-phenotype map

This repository contains all data and scripts used to analyze reproductive isolation barriers for the "Testing the predictions of reinforcement: long-term empirical data from a damselfly mottled hybrid zone" manuscript.

analysis of synteny across animals

Montecarlo simulation for the voter model with speciation.

Simulation of evolutionary branching under optimal resource choice

Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"