genomic alignment similarity search tool

ORI (Oxford nanopore Reads Identification) is a software allowing, from long nanopore reads, to identify the bacterial strains present in a sample.

subset and spaced seed design tool

An algorithm for finding SNPs of a long read compared to a reference genome

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

The GPU-version and MPI-version of PerM

Master's Thesis in Computer Engineering at the University of Padua

DNA read mapping (seed-extension-aligner)