This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
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Updated
Jun 7, 2018 - R
#
salmon-deseq2
Here are 6 public repositories matching this topic...
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
linux
unix
bioinformatics
rna-seq
r
hpc
rstudio
ngs
next-generation-sequencing
bioinformatics-pipeline
rnaseq
deseq2
rna-sequencing
salmon
rna-seq-analysis
rna-seq-data
ngs-analysis
rna-seq-pipeline
salmon-deseq2
tximport
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Updated
Aug 28, 2020 - Shell
This repo contains code to pre-process, quant, and analyze RNA-Seq data obtained from human enteriod cell cultures
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Dec 28, 2022 - Shell
Jupyter notebooks for DGE results and ontology analysis and visualisation.
data-visualization
deseq2
transcriptomics
salmon
dge
salmon-deseq2
deseq2-analysis
ontology-analysis
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Aug 28, 2024 - Jupyter Notebook
Simple Snakemake RNA-Seq pipeline
python
rna-seq
snakemake
r
pandas
python3
bioconductor
salmon
miniconda
dge
miniconda3
dge-analysis
salmon-deseq2
rnaseq-pipeline
snakemake-pipeline
rnaseq-analysis
snakemake-rna-seq
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Updated
Mar 21, 2023 - Python
Simple Nextflow RNA-Seq pipeline
rna-seq
r
nextflow
bioconductor
deseq2
salmon
rna-seq-analysis
miniconda
miniconda-environments
miniconda3
rna-seq-pipeline
dge-analysis
salmon-deseq2
nextflow-pipeline
nextflow-rnaseq
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Updated
Jan 24, 2024 - Nextflow
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