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prophage

Here are 6 public repositories matching this topic...

mtisza1 / Cenote-Taker2

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

virus annotation discovery genbank hhblits hhsearch metagenomes virome virus-discovery prophage hallmark virus-evolution cenote-taker2 prophage-prediction virus-sequences cenote-unlimited-breadsticks

Updated Jan 19, 2024
Shell

bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
HTML

WangLab-SCSIO / Prophage_Tracer

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

bioinformatics genomics ngs sequencing prophage prophage-prediction

Updated Oct 16, 2024
Shell

mtisza1 / Cenote_Unlimited_Breadsticks

DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report

virus discovery prediction hidden-markov-model phage contigs virus-discovery prophage prophage-prediction unlimited-breadsticks

Updated Jan 19, 2024
Shell

naturepoker / phaster_kits

Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)

evolution virology phage prophage amateur-science phaster phage-research

Updated Mar 1, 2024
Shell

Strong-Lab / Prophage_in_NTM

This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

virulence-factor ntm mycobacterium prophage prophages integrated-prophages

Updated Dec 16, 2020
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