Single Cell Multi-omics deep clustering
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Updated
Feb 8, 2024 - Python
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multiomics-data
Here are 7 public repositories matching this topic...
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
python
diversity
plotly
protein
dask
fastq
k-mer-counting
k-mer-frequency
divideandconquer
metagenomic-analysis
metatranscriptomic-analysis
kmer-frequency-count
nucleotides
diversity-estimation
database-independent-analysis
multiomics
multiomics-data
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Jun 12, 2024 - HTML
MOVIS: A Multi-Omics Software Solution for Multi-modal Time-Series Clustering, Embedding, and Visualizing Tasks, by Aleksandar Anžel, Dominik Heider, and Georges Hattab
visualization
machine-learning
bioinformatics
time-series
cross-platform
clustering
web-app
exploratory-data-analysis
time-series-analysis
multiomics
multiomics-data
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May 17, 2022 - Python
Code for paper Multiomics dynamic learning enables personalized diagnosis and prognosis for pan-cancer and cancer-subtypes
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Oct 29, 2023 - Python
Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation
transcription-factors
protein-interaction
network-regularization
gene-expression-profiles
transcriptional-regulatory-network
single-cell-analysis
ppi-networks
network-lasso
multiomics-data
gene-regulatory-network-inference
bioinformatics-software
transcription-factor-coordination
regularization-embeddings
regression-embeddings
predictor-interactions
network-guided-regression
regression-with-prior-knowledge
network-based-inference
netrem
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May 18, 2024 - Jupyter Notebook
coxnnet v1 and v2 models updated to work with Python3.
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May 1, 2021 - Jupyter Notebook
Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.
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Updated
Nov 17, 2024 - Python
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