Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
picard
samtools
bwa-mem
varscan
bcftools
bowtie2
trimgalore
cutadapt
fastqc
freebayes
fastp
gatk4
trimmomatic
gatk-bestpractices
gatk-joint-variant-calling-workflow
gatk-cnv
gatk4-haplotypecaller
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Updated
Jan 17, 2024 - Shell