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bedops

Here are 5 public repositories matching this topic...

bedops / bedops

🔬 BEDOPS: high-performance genomic feature operations

c c-plus-plus set bioinformatics compression pipeline genomics toolkit conversion parallel set-theory bed bedops

Updated Jan 28, 2024
C

noamteyssier / gia

gia: Genomic Interval Arithmetic

genomics set-theory bedops bedtools intervals set-operations

Updated Aug 21, 2024
Rust

alexpreynolds / disjoint-windows

Build a list of high-scoring, non-overlapping intervals using sampling or scheduling methods

sample bioinformatics genome priority-queue bedops packing disjoint scheduling-algorithms

Updated Feb 17, 2022
Python

alexpreynolds / cull-exemplars

Filter lower-scoring, neighboring genomic intervals within a specified distance

set bioinformatics bed interval bedops set-operations

Updated Feb 25, 2022
Jupyter Notebook

shraddhapuntambekar / mapping_conservation_scores

Scripts to map conservation scores (phastcons/phylop) to the regions of interest

bedops conservation-scores phastcons phylop

Updated Jul 24, 2024
Shell

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