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association-studies

Here are 14 public repositories matching this topic...

YinLiLin / CMplot

📊 Circular and Rectangular Manhattan Plot

manhattan-plot association-studies

Updated May 20, 2024
R

VariantSpark

aehrc / VariantSpark

machine learning for genomic variants

emr aws bioinformatics gwas genome random-forest notebook vcf databricks association-studies variant-spark variantspark

Updated Oct 17, 2024
JavaScript

ramiromagno / gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

r trait human snp gwas-catalog rest-client association-studies trait-ontology

Updated Dec 15, 2023
R

swvanderlaan / MetaGWASToolKit

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

gwas genome variants meta-analysis indels chromosome association-studies gwas-dataset allele-frequencies allele-counts

Updated Oct 31, 2024
Shell

Poissonfish / iPat

iPat allows you to perform GWAS and GS with drags and clicks!

gui gwas genomics genome analysis vcf hapmap genome-analysis genomic-data-analysis gene-prediction association-studies ipat

Updated Jul 12, 2022
Java

fuxialexander / marvel

Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

bioinformatics pipeline nextflow disease marvel wgs association-studies epigenomics noncoding

Updated Feb 3, 2021
Python

KiranJavkar / PRAWNS

PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features

bioinformatics genomics computational-biology microbial-genomics population-genomics comparative-genomics genome-analysis whole-genome-sequencing antibiotic-resistance parallel-programming association-studies whole-genome-alignment antimicrobial-resistance pan-genome-analysis bacterial-gwas whole-genome-genotyping

Updated Jan 2, 2023
C++

xinghuq / DeepGenomeScan

DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)

gwas deep-learning genome convolutional-neural-networks association-studies genome-scan

Updated Sep 15, 2022
R

cfbeuchel / gwascatftp

R package to access GWAS Catalog FTP data

gwas r ftp gwas-catalog summary-statistics association-studies

Updated Jan 29, 2024
R

daissi / thesias

THESIAS: Testing Haplotype Effects In Association Studies

bioinformatics genomics java-interface association-analysis association-studies haplotype

Updated Jul 31, 2024
C

jromanowska / Norwegian_drug_screening_ATC_level2

Scripts and results from an article on screening of Norwegian health registries in search for associations between drug usage and Parkinson's disease incidence.

epidemiology parkinsons-disease prescriptions association-studies health-records drug-disease-associations

Updated Sep 11, 2024
HTML

swvanderlaan / covid19_hg

Reviewing the (preliminary) summary statistics from the COVID19 Host Genetics Initiative meta-analysis of genome-wide association studies (GWAS).

gwas summary-statistics association-studies genome-wide covid-19 covid19

Updated May 17, 2020
HTML

GWASpi / GWASpi

A tool to perform Genome-Wide Association Studies

java pipeline association-studies genome-wide

Updated Jul 29, 2015
Java

Yun-Ching-Chen / BOMP

Phenotype-Gene Association Test for Case-Control Study using NGS-Sequencing Data

statistical-tests genome-sequencing association-studies

Updated Jan 23, 2020
Java

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