Materials and presentation for the 2022 ISB Microbiome course.

Materials and presentation for the 2023 ISB Microbiome course.

A Qiime plugin for MICOM.

Quantitative metagenomic alignment and taxonomic exact-matching

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R

Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud

AU microbiome molecular exploratory analyses for NSW

VSEARCH pipeline for ASV inference of 16S seq data

Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"

A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia