Prepare for next release

CITATION.cff

@@ -8,8 +8,63 @@ message: 'To cite package "tabula" in publications use:'
 type: software
 license: GPL-3.0-or-later
 title: 'tabula: Analysis and Visualization of Archaeological Count Data'
-version: 3.1.0
+version: 3.1.1
 doi: 10.21105/joss.01821
+identifiers:
+- description: The concept DOI.
+  type: doi
+  value: 10.5281/zenodo.1489944
+- description: The versioned DOI for version 0.9.0.
+  type: doi
+  value: 10.5281/zenodo.1489945
+- description: The versioned DOI for version 1.0.0.
+  type: doi
+  value: 10.5281/zenodo.1881131
+- description: The versioned DOI for version 1.1.0.
+  type: doi
+  value: 10.5281/zenodo.2529084
+- description: The versioned DOI for version 1.2.0.
+  type: doi
+  value: 10.5281/zenodo.2600844
+- description: The versioned DOI for version 1.3.0.
+  type: doi
+  value: 10.5281/zenodo.3455385
+- description: The versioned DOI for version 1.4.0.
+  type: doi
+  value: 10.5281/zenodo.3552904
+- description: The versioned DOI for version 1.5.0.
+  type: doi
+  value: 10.5281/zenodo.3612110
+- description: The versioned DOI for version 1.5.1.
+  type: doi
+  value: 10.5281/zenodo.3716163
+- description: The versioned DOI for version 1.6.0.
+  type: doi
+  value: 10.5281/zenodo.4748807
+- description: The versioned DOI for version 1.6.1.
+  type: doi
+  value: 10.5281/zenodo.4793496
+- description: The versioned DOI for version 1.7.0.
+  type: doi
+  value: 10.5281/zenodo.6703727
+- description: The versioned DOI for version 1.8.0.
+  type: doi
+  value: 10.5281/zenodo.7060361
+- description: The versioned DOI for version 2.0.0.
+  type: doi
+  value: 10.5281/zenodo.7296619
+- description: The versioned DOI for version 3.0.0.
+  type: doi
+  value: 10.5281/zenodo.8274042
+- description: The versioned DOI for version 3.0.1.
+  type: doi
+  value: 10.5281/zenodo.10214364
+- description: The versioned DOI for version 3.1.0.
+  type: doi
+  value: 10.5281/zenodo.11205411
+- description: The Software Heritage identifier for version 2.0.0.
+  type: swh
+  value: swh:1:rel:7a252fd4e6b5c8650fcf135c8c4627366cd04d37
 abstract: 'An easy way to examine archaeological count data. This package provides
   several tests and measures of diversity: heterogeneity and evenness (Brillouin,
   Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.),
@@ -68,66 +123,11 @@ references:
   authors:
   - family-names: Frerebeau
     given-names: Nicolas
-  year: '2023'
+  year: '2024'
   institution:
     name: Université Bordeaux Montaigne
     address: Pessac, France
-  notes: R package version 3.0.1
+  notes: R package version 3.1.1
   url: https://packages.tesselle.org/tabula/
   doi: 10.5281/zenodo.1489944
-identifiers:
-- description: The concept DOI.
-  type: doi
-  value: 10.5281/zenodo.1489944
-- description: The versioned DOI for version 0.9.0.
-  type: doi
-  value: 10.5281/zenodo.1489945
-- description: The versioned DOI for version 1.0.0.
-  type: doi
-  value: 10.5281/zenodo.1881131
-- description: The versioned DOI for version 1.1.0.
-  type: doi
-  value: 10.5281/zenodo.2529084
-- description: The versioned DOI for version 1.2.0.
-  type: doi
-  value: 10.5281/zenodo.2600844
-- description: The versioned DOI for version 1.3.0.
-  type: doi
-  value: 10.5281/zenodo.3455385
-- description: The versioned DOI for version 1.4.0.
-  type: doi
-  value: 10.5281/zenodo.3552904
-- description: The versioned DOI for version 1.5.0.
-  type: doi
-  value: 10.5281/zenodo.3612110
-- description: The versioned DOI for version 1.5.1.
-  type: doi
-  value: 10.5281/zenodo.3716163
-- description: The versioned DOI for version 1.6.0.
-  type: doi
-  value: 10.5281/zenodo.4748807
-- description: The versioned DOI for version 1.6.1.
-  type: doi
-  value: 10.5281/zenodo.4793496
-- description: The versioned DOI for version 1.7.0.
-  type: doi
-  value: 10.5281/zenodo.6703727
-- description: The versioned DOI for version 1.8.0.
-  type: doi
-  value: 10.5281/zenodo.7060361
-- description: The versioned DOI for version 2.0.0.
-  type: doi
-  value: 10.5281/zenodo.7296619
-- description: The versioned DOI for version 3.0.0.
-  type: doi
-  value: 10.5281/zenodo.8274042
-- description: The versioned DOI for version 3.0.1.
-  type: doi
-  value: 10.5281/zenodo.10214364
-- description: The versioned DOI for version 3.1.0.
-  type: doi
-  value: 10.5281/zenodo.11205411
-- description: The Software Heritage identifier for version 2.0.0.
-  type: swh
-  value: swh:1:rel:7a252fd4e6b5c8650fcf135c8c4627366cd04d37
 

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: tabula
 Title: Analysis and Visualization of Archaeological Count Data
-Version: 3.1.0.9000
+Version: 3.1.1
 Authors@R: c(
     person("Nicolas", "Frerebeau", , "nicolas.frerebeau@u-bordeaux-montaigne.fr", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")),
@@ -40,7 +40,7 @@ Imports:
     stats,
     utils
 Suggests: 
-    folio (>= 1.4.0),
+    folio (>= 1.5.0),
     knitr,
     markdown,
     rsvg,

NEWS.md

@@ -1,4 +1,4 @@
-# tabula 3.1.0.9000
+# tabula 3.1.1
 ## Internals
 * Use palette functions from **khroma**.
 

R/tabula-package.R

@@ -2,7 +2,7 @@
 #' \tabular{ll}{
 #'  **Package:** \tab tabula \cr
 #'  **Type:** \tab Package \cr
-#'  **Version:** \tab 3.1.0 \cr
+#'  **Version:** \tab 3.1.1 \cr
 #'  **License:** \tab GPL-3 \cr
 #'  **Zenodo:** \tab \doi{10.5281/zenodo.1489944} \cr
 #'  **JOSS:** \tab \doi{10.21105/joss.01821} \cr

README.Rmd

@@ -76,7 +76,7 @@ remotes::install_github("tesselle/tabula")
 ## Install extra packages (if needed)
 # install.packages("folio")
 
-## Load packages
+## Load the package
 library(tabula)
 ```
 

README.md

@@ -74,7 +74,7 @@ Software*, *4*(44). <doi:10.21105/joss.01821>
 Frerebeau N (2024). *tabula: Analysis and Visualization of
 Archaeological Count Data*. Université Bordeaux Montaigne, Pessac,
 France. <doi:10.5281/zenodo.1489944>
-<https://doi.org/10.5281/zenodo.1489944>, R package version 3.1.0,
+<https://doi.org/10.5281/zenodo.1489944>, R package version 3.1.1,
 <https://packages.tesselle.org/tabula/>.
 
 This package is a part of the tesselle project
@@ -102,7 +102,7 @@ remotes::install_github("tesselle/tabula")
 ## Install extra packages (if needed)
 # install.packages("folio")
 
-## Load packages
+## Load the package
 library(tabula)
 ```
 

codemeta.json

@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/tesselle/tabula",
   "issueTracker": "https://github.com/tesselle/tabula/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "3.1.0.9000",
+  "version": "3.1.1",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -91,7 +91,7 @@
       "@type": "SoftwareApplication",
       "identifier": "folio",
       "name": "folio",
-      "version": ">= 1.4.0",
+      "version": ">= 1.5.0",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
@@ -233,7 +233,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "1585.627KB",
+  "fileSize": "1589.265KB",
   "citation": [
     {
       "@type": "ScholarlyArticle",
@@ -273,7 +273,7 @@
       "name": "{tabula: Analysis and Visualization of Archaeological Count Data}",
       "identifier": "10.5281/zenodo.1489944",
       "url": "https://packages.tesselle.org/tabula/",
-      "description": "R package version 3.1.0.9000",
+      "description": "R package version 3.1.1",
       "@id": "https://doi.org/10.5281/zenodo.1489944",
       "sameAs": "https://doi.org/10.5281/zenodo.1489944"
     }

cran-comments.md

@@ -1,5 +1,5 @@
 ## Test environments
-* Local R installation: R 4.3.3
+* Local R installation: R 4.4.1
 * Ubuntu (on GitHub Actions): R devel, release, oldrel
 * Windows (on GitHub Actions and win-builder): R devel, release, oldrel
 * MacOS (on GitHub Actions): R release

revdep/README.md

@@ -1,25 +1,26 @@
 # Platform
 
-|field    |value                                                                                |
-|:--------|:------------------------------------------------------------------------------------|
-|version  |R version 4.3.3 (2024-02-29)                                                         |
-|os       |Ubuntu 22.04.4 LTS                                                                   |
-|system   |x86_64, linux-gnu                                                                    |
-|ui       |RStudio                                                                              |
-|language |(EN)                                                                                 |
-|collate  |fr_FR.UTF-8                                                                          |
-|ctype    |fr_FR.UTF-8                                                                          |
-|tz       |Europe/Paris                                                                         |
-|date     |2024-05-16                                                                           |
-|rstudio  |2024.04.0+735 Chocolate Cosmos (desktop)                                             |
-|pandoc   |3.1.11 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/x86_64/ (via rmarkdown) |
+|field    |value                                    |
+|:--------|:----------------------------------------|
+|version  |R version 4.4.1 (2024-06-14)             |
+|os       |Ubuntu 22.04.4 LTS                       |
+|system   |x86_64, linux-gnu                        |
+|ui       |RStudio                                  |
+|language |(EN)                                     |
+|collate  |fr_FR.UTF-8                              |
+|ctype    |fr_FR.UTF-8                              |
+|tz       |Europe/Paris                             |
+|date     |2024-09-05                               |
+|rstudio  |2024.04.2+764 Chocolate Cosmos (desktop) |
+|pandoc   |NA                                       |
 
 # Dependencies
 
-|package |old   |new   |Δ  |
-|:-------|:-----|:-----|:--|
-|tabula  |3.0.1 |3.1.0 |*  |
-|arkhe   |1.6.0 |1.6.0 |   |
+|package |old   |new    |Δ  |
+|:-------|:-----|:------|:--|
+|tabula  |3.1.0 |3.1.1  |*  |
+|arkhe   |1.7.0 |1.7.0  |   |
+|khroma  |NA    |1.14.0 |*  |
 
 # Revdeps