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1. macs3-project/MACS macs3-project/MACS Public

   MACS -- Model-based Analysis of ChIP-Seq

   Python 715 269

2. taolib taolib Public

   Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)

   Python 26 14

3. HMMRATAC HMMRATAC Public

   Forked from LiuLabUB/HMMRATAC

   HMMRATAC peak caller for ATAC-seq data

   Java 1

4. SAPPER SAPPER Public

   Forked from LiuLabUB/SAPPER

   SAPPER -- call variance from ChIP-Seq directly

   Python 1

5. bedGraph to bigWig bedGraph to bigWig

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   #!/bin/bash

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   # check commands: slopBed, bedGraphToBigWig and bedClip

   4

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   which bedtools &>/dev/null || { echo "bedtools not found! Download bedTools: <http://code.google.com/p/bedtools/>"; exit 1; }

6. Monitor user time and memory usage o... Monitor user time and memory usage of a process

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   #!/bin/bash

   2

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   if [[ $# < 2 ]];then

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       echo 'need two parameters: $0 <interval> <pid>'

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       exit 1;