DESCRIPTION

Package: systemPipeRdata
Title: systemPipeRdata: Workflow templates and sample data
Version: 2.9.7
Date: 2024-10-06
Author: Thomas Girke
Maintainer: Thomas Girke <thomas.girke@ucr.edu>
biocViews: Genetics, Infrastructure, DataImport, Sequencing, RNASeq,
        ChIPSeq, MethylSeq, SNP, GeneExpression, Coverage,
        GeneSetEnrichment, Alignment, QualityControl, ImmunoOncology, 
        RiboSeq, WorkflowStep
Description: systemPipeRdata complements the systemPipeR workflow management
        system (WMS) by offering a collection of pre-designed data analysis workflow
        templates. These templates are easily accessible and can be readily loaded onto
        a user's system with a single command. Once loaded, the WMS can immediately
        utilize these templates for efficient end-to-end analysis, serving a wide range 
        of data analysis needs. 
Depends: R (>= 3.6.0)
Imports: methods, Biostrings, BiocGenerics, jsonlite, remotes
Suggests: GenomicFeatures, GenomicRanges, IRanges, Rsamtools, ShortRead, rtracklayer, RUnit, BiocStyle, knitr, rmarkdown, systemPipeR, kableExtra, magrittr, dplyr  
VignetteBuilder: knitr
License: Artistic-2.0
NeedsCompilation: no
URL: https://github.com/tgirke/systemPipeRdata, https://systempipe.org/