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maboss-windows.yml
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name: Windows
on:
push:
pull_request:
release:
types: [created]
jobs:
maboss_windows:
name: MaBoSS Windows
runs-on: windows-latest
defaults:
run:
shell: msys2 {0}
env:
CC: gcc
CXX: g++
INSTALL_PATH: /mingw64/
BUILD_PATH: /tmp/
LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a
LIBXML_INCLUDEDIR: /mingw64/include/libxml2/
steps:
- uses: actions/checkout@v4
- uses: msys2/setup-msys2@v2
with:
update: true
install: flex bison make
mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils
mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs
mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2
mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-hdf5
mingw-w64-x86_64-python-pip mingw-w64-x86_64-python-numpy mingw-w64-x86_64-libxml2
mingw-w64-x86_64-diffutils
- name: Cache compiled libSBML
id: cache-libsbml-gcc
uses: actions/cache@v4
with:
path: D:/a/_temp/msys64/tmp/libsbml-5.20.4
key: ${{ runner.os }}-libSBML-5.20.4-namespace
- name: Compiling libSBML
if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true'
run: |
bash scripts/build_libsbml.sh
- name: Install libSBML
run: |
bash scripts/install_libsbml.sh
- name: Build MaBoSS
run: |
cd engine/src
make MAXNODES=128 SBML_COMPAT=1 maboss popmaboss
make SBML_COMPAT=1 maboss popmaboss
- name: Test MaBoSS
run: bash scripts/run_tests.sh
maboss_binary_windows:
runs-on: windows-latest
name: Building MaBoSS Windows 64bits binary
needs: maboss_windows
defaults:
run:
shell: msys2 {0}
env:
CC: gcc
CXX: g++
INSTALL_PATH: /mingw64/
BUILD_PATH: /tmp/
LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a
LIBXML_INCLUDEDIR: /mingw64/include/libxml2/
steps:
- uses: actions/checkout@v4
- uses: msys2/setup-msys2@v2
with:
update: true
install: flex bison make zip
mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils
mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs
mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2
mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-libxml2
- name: Cache compiled libSBML
id: cache-libsbml-gcc
uses: actions/cache@v4
with:
path: D:/a/_temp/msys64/tmp/libsbml-5.20.4
key: ${{ runner.os }}-libSBML-5.20.4-namespace
- name: Compiling libSBML
if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true'
run: |
bash scripts/build_libsbml.sh
- name: Install libSBML
run: |
bash scripts/install_libsbml.sh
- name: Build binary
run: |
rm -fr engine/pub/*
cd engine/src
make clean
make install_static SBML_COMPAT=1
make install_static MAXNODES=128 SBML_COMPAT=1
make install_static MAXNODES=256 SBML_COMPAT=1
make install_static MAXNODES=512 SBML_COMPAT=1
make install_static MAXNODES=1024 SBML_COMPAT=1
cd ../pub
zip MaBoSS-win64.zip *
- uses: actions/upload-artifact@v4
if: github.event_name != 'release'
with:
name: MaBoSS-win64
path: D:\a\MaBoSS/MaBoSS/engine/pub/MaBoSS-win64.zip
- uses: actions/upload-release-asset@v1
if: github.event_name == 'release'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_name: MaBoSS-win64.zip
asset_path: D:\a\MaBoSS/MaBoSS/engine/pub/MaBoSS-win64.zip
asset_content_type: application/zip
maboss_library_windows:
runs-on: windows-latest
name: Building MaBoSS Windows 64bits library
needs: maboss_windows
defaults:
run:
shell: msys2 {0}
steps:
- uses: actions/checkout@v4
- uses: msys2/setup-msys2@v2
with:
update: true
install: flex bison make
mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils
mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs
mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git
- name: Build library
run: |
rm -fr engine/pub/*
cd engine/src
make clean
make install_lib
make install_lib MAXNODES=128
make install_lib MAXNODES=256
make install_lib MAXNODES=512
make install_lib MAXNODES=1024
make install_alib
make install_alib MAXNODES=128
make install_alib MAXNODES=256
make install_alib MAXNODES=512
make install_alib MAXNODES=1024
make clean
cd ../../../
tar -zcvf libMaBoSS-win64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib
- uses: actions/upload-artifact@v4
if: github.event_name != 'release'
with:
name: libMaBoSS-win64
path: D:\a\MaBoSS/libMaBoSS-win64.tar.gz
- uses: actions/upload-release-asset@v1
if: github.event_name == 'release'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_name: libMaBoSS-win64.tar.gz
asset_path: D:\a\MaBoSS/libMaBoSS-win64.tar.gz
asset_content_type: application/gzip
maboss_sbml_library_windows:
runs-on: windows-latest
name: Building MaBoSS Windows 64bits library with libSBML
needs: maboss_windows
defaults:
run:
shell: msys2 {0}
env:
CC: gcc
CXX: g++
INSTALL_PATH: /mingw64/
BUILD_PATH: /tmp/
LIBXML_LIBDIR: /mingw64/lib/libxml2.dll.a
LIBXML_INCLUDEDIR: /mingw64/include/libxml2/
steps:
- uses: actions/checkout@v4
- uses: msys2/setup-msys2@v2
with:
update: true
install: flex bison make
mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake mingw-w64-x86_64-binutils
mingw-w64-x86_64-gcc mingw-w64-x86_64-headers-git mingw-w64-x86_64-gcc-libs
mingw-w64-x86_64-libwinpthread-git mingw-w64-x86_64-winpthreads-git mingw-w64-x86_64-bzip2
mingw-w64-x86_64-lapack mingw-w64-x86_64-openblas mingw-w64-x86_64-libxml2
- name: Cache compiled libSBML
id: cache-libsbml-gcc
uses: actions/cache@v4
with:
path: D:/a/_temp/msys64/tmp/libsbml-5.20.4
key: ${{ runner.os }}-libSBML-5.20.4-namespace
- name: Compiling libSBML
if: steps.cache-libsbml-gcc.outputs.cache-hit != 'true'
run: |
bash scripts/build_libsbml.sh
- name: Install libSBML
run: |
bash scripts/install_libsbml.sh
- name: Build library
run: |
rm -fr engine/pub/*
cd engine/src
make clean
make install_lib SBML_COMPAT=1
make install_lib MAXNODES=128 SBML_COMPAT=1
make install_lib MAXNODES=256 SBML_COMPAT=1
make install_lib MAXNODES=512 SBML_COMPAT=1
make install_lib MAXNODES=1024 SBML_COMPAT=1
make install_alib SBML_COMPAT=1
make install_alib MAXNODES=128 SBML_COMPAT=1
make install_alib MAXNODES=256 SBML_COMPAT=1
make install_alib MAXNODES=512 SBML_COMPAT=1
make install_alib MAXNODES=1024 SBML_COMPAT=1
make clean
cd ../../../
tar -zcvf libMaBoSS-sbml-win64.tar.gz MaBoSS/README.md MaBoSS/LICENSE MaBoSS/engine/src MaBoSS/engine/include MaBoSS/engine/lib
- uses: actions/upload-artifact@v4
if: github.event_name != 'release'
with:
name: libMaBoSS-sbml-win64
path: D:\a\MaBoSS/libMaBoSS-sbml-win64.tar.gz
- uses: actions/upload-release-asset@v1
if: github.event_name == 'release'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_name: libMaBoSS-sbml-win64.tar.gz
asset_path: D:\a\MaBoSS/libMaBoSS-sbml-win64.tar.gz
asset_content_type: application/gzip