NAMESPACE

# Generated by roxygen2: do not edit by hand

export(FromCountsObj)
export(Make3D4obj)
export(NGSexpressionSet)
export(SingleCellsNGS)
export(add2usedObj)
export(addAnnotation)
export(addCluster)
export(anayse_working_set)
export(as_BioData)
export(as_NGSexpressionSet)
export(bestGrouping)
export(check.depth)
export(clusters)
export(coexprees4gene)
export(collaps)
export(colors_4)
export(complexHeatmap)
export(cor2cytoscape)
export(corMat)
export(createRFgrouping_col)
export(createRFgrouping_row)
export(createStats)
export(defineHeatmapColors)
export(describe.probeset)
export(drop.samples)
export(export.data)
export(force.numeric)
export(getProbesetsFromStats)
export(getProbesetsFromValues)
export(get_gene_list)
export(gg.heatmap.list)
export(ggplot.gene)
export(group.hclust)
export(groups.boxplot)
export(identifyBestGrouping)
export(interesting_genes)
export(loadObj)
export(mds)
export(melt.StefansExpressionSet)
export(minValueExpr)
export(name_4_IDs)
export(normalize)
export(pcorMat)
export(plot.heatmaps)
export(plot.legend)
export(plot.probeset)
export(plot.stats.as.heatmap)
export(plot_histogram)
export(predict.rf)
export(preprocess)
export(pwd)
export(qualityTest)
export(quality_of_fit)
export(ranks)
export(read.bams)
export(reads.taken)
export(reduce.Obj)
export(removeBatch)
export(reorder.genes)
export(reorder.samples)
export(restrictSamples)
export(rfCluster_col)
export(rfCluster_row)
export(saveObj)
export(sd.filter)
export(set.outpath)
export(simpleAnova)
export(transpose)
export(update.measurements)
export(write.data)
export(writeStatTables)
export(z.score)
exportClasses(NGSexpressionSet)
exportClasses(StefansExpressionSet)
exportMethods(StefansExpressionSet)
exportMethods(log2)
exportMethods(normalize)
exportMethods(show)
exportMethods(simpleAnova)