diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml
new file mode 100644
index 0000000..349bb16
--- /dev/null
+++ b/.github/workflows/wheels.yml
@@ -0,0 +1,40 @@
+name: Build
+
+on: [push, pull_request]
+
+jobs:
+ build_wheels:
+ name: Build wheels on ${{ matrix.os }}
+ runs-on: ${{ matrix.os }}
+ strategy:
+ matrix:
+ os: [ubuntu-20.04, windows-2019]
+
+ steps:
+ # Install poetry
+ - uses: actions/checkout@v4
+ - name: Install poetry
+ run: pipx install poetry
+
+ # Used to host poetry
+ - uses: actions/setup-python@v3
+ - name: Lock and install dependencies
+ run: |
+ poetry lock
+ poetry install
+
+ - name: Build and build sdist package
+ run: |
+ poetry run python setup.py build
+ poetry run python setup.py sdist
+
+ - name: Build wheel package
+ run: poetry run python setup.py bdist_wheel
+
+ - name: Build wheels for more general OS
+ run: poetry build --format=wheel
+
+ - uses: actions/upload-artifact@v4
+ with:
+ name: rehline-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+ path: ./dist
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
index eb43311..5b413d3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -18,3 +18,6 @@ env/
eigen-3.4.0/
eigen3.zip
+# Package sdist
+*.tar.gz
+*.whl
\ No newline at end of file
diff --git a/build.py b/build.py
new file mode 100644
index 0000000..9084316
--- /dev/null
+++ b/build.py
@@ -0,0 +1,85 @@
+import os
+from pathlib import Path
+import zipfile
+import requests
+from pybind11.setup_helpers import Pybind11Extension, build_ext
+# from setuptools.command.build_ext import build_ext
+
+__version__ = "0.0.3"
+
+# The main interface is through Pybind11Extension.
+# * You can add cxx_std=11/14/17, and then build_ext can be removed.
+# * You can set include_pybind11=false to add the include directory yourself,
+# say from a submodule.
+#
+# Note:
+# Sort input source files if you glob sources to ensure bit-for-bit
+# reproducible builds (https://github.com/pybind/python_example/pull/53)
+
+SETUP_DIRECTORY = Path(__file__).resolve().parent
+
+# Download Eigen source files
+# Modified from https://github.com/tohtsky/irspack/blob/main/setup.py
+class get_eigen_include(object):
+ EIGEN3_URL = "https://gitlab.com/libeigen/eigen/-/archive/3.4.0/eigen-3.4.0.zip"
+ EIGEN3_DIRNAME = "eigen-3.4.0"
+
+ def __str__(self) -> str:
+ # Test whether the environment variable EIGEN3_INCLUDE_DIR is set
+ # If yes, directly return this directory
+ eigen_include_dir = os.environ.get("EIGEN3_INCLUDE_DIR", None)
+ if eigen_include_dir is not None:
+ return eigen_include_dir
+
+ # If the directory already exists (e.g. from previous setup),
+ # directly return it
+ target_dir = SETUP_DIRECTORY / self.EIGEN3_DIRNAME
+ if target_dir.exists():
+ return target_dir.name
+
+ # Filename for the downloaded Eigen source package
+ download_target_dir = SETUP_DIRECTORY / "eigen3.zip"
+ response = requests.get(self.EIGEN3_URL, stream=True)
+ with download_target_dir.open("wb") as ofs:
+ for chunk in response.iter_content(chunk_size=1024):
+ ofs.write(chunk)
+ # Unzip package
+ with zipfile.ZipFile(download_target_dir) as ifs:
+ ifs.extractall()
+
+ return target_dir.name
+
+ext_modules = [
+ Pybind11Extension("rehline._internal",
+ sources=["src/rehline.cpp"],
+ include_dirs=[get_eigen_include()],
+ # Example: passing in the version to the compiled code
+ # define_macros=[('VERSION_INFO', __version__)],
+ ),
+]
+
+# class BuildFailed(Exception):
+# pass
+
+# class ExtBuilder(build_ext):
+
+# def run(self):
+# try:
+# build_ext.run(self)
+# except (DistutilsPlatformError, FileNotFoundError):
+# raise BuildFailed('File not found. Could not compile C extension.')
+
+# def build_extension(self, ext):
+# try:
+# build_ext.build_extension(self, ext)
+# except (CCompilerError, DistutilsExecError, DistutilsPlatformError, ValueError):
+# raise BuildFailed('Could not compile C extension.')
+
+
+def build(setup_kwargs):
+ """
+ This function is mandatory in order to build the extensions.
+ """
+ setup_kwargs.update(
+ {"ext_modules": ext_modules, "cmd_class": {"build_ext": build_ext}, "zip_safe": False}
+ )
\ No newline at end of file
diff --git a/dist/rehline-0.0.1.tar.gz b/dist/rehline-0.0.1.tar.gz
deleted file mode 100644
index 775ce13..0000000
Binary files a/dist/rehline-0.0.1.tar.gz and /dev/null differ
diff --git a/doc/source/conf.py b/doc/source/conf.py
index 7df87ec..de2fb6b 100644
--- a/doc/source/conf.py
+++ b/doc/source/conf.py
@@ -71,7 +71,7 @@
# a list of builtin themes.
html_theme = 'renku'
-html_logo = "logo.png"
+# html_logo = "logo.png"
# html_theme_path = [hachibee_sphinx_theme.get_html_themes_path()]
diff --git a/doc/source/index.rst b/doc/source/index.rst
index 8c5d408..a6c7d20 100644
--- a/doc/source/index.rst
+++ b/doc/source/index.rst
@@ -6,6 +6,12 @@
🦌 ReHLine
==========
+.. raw:: html
+
+
+
.. -*- mode: rst -*-
|PyPi|_ |MIT|_ |Python3|_
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 0000000..8f3b73f
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,350 @@
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+
+[[package]]
+name = "certifi"
+version = "2024.2.2"
+description = "Python package for providing Mozilla's CA Bundle."
+optional = false
+python-versions = ">=3.6"
+files = [
+ {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+ {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
+]
+
+[[package]]
+name = "charset-normalizer"
+version = "3.3.2"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+optional = false
+python-versions = ">=3.7.0"
+files = [
+ {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
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+brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
+socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
+zstd = ["zstandard (>=0.18.0)"]
+
+[metadata]
+lock-version = "2.0"
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diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..b75438c
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,32 @@
+[tool.poetry]
+name = "rehline"
+version = "0.0.3"
+description = "Regularized Composite ReLU-ReHU Loss Minimization with Linear Computation and Linear Convergence"
+authors = ["Ben Dai ", "Yixuan Qiu "]
+maintainers = ["Ben Dai "]
+license = "MIT"
+readme = "README.md"
+homepage = "https://rehline.github.io/"
+repository = "https://github.com/softmin/ReHLine-python"
+documentation = "https://rehline-python.readthedocs.io/en/latest/index.html"
+include = [
+ {path = "rehline/*.so", format = "wheel"}
+]
+
+[tool.poetry.build]
+script = "build.py"
+generate-setup-file = false
+
+[tool.poetry.dependencies]
+python = "^3.10"
+requests = "^2.27.0"
+pybind11 = "^2.11.1"
+numpy = "^1.23.5"
+scipy = "^1.11.4"
+scikit-learn = "^1.2.2"
+setuptools = "^69.0.3"
+wheel = "^0.42.0"
+
+[build-system]
+requires = ["poetry-core>=1.0.0", "requests ~= 2.27.0", "pybind11 ~= 2.11.1", "setuptools ~= 69.0.3", "wheel ~= 0.42.0"]
+build-backend = "poetry.core.masonry.api"
\ No newline at end of file
diff --git a/rehline/__init__.py b/rehline/__init__.py
index 3e55123..d67ca3c 100644
--- a/rehline/__init__.py
+++ b/rehline/__init__.py
@@ -1,7 +1,7 @@
# Import from internal C++ module
from ._internal import rehline_internal, rehline_result
-from ._loss import ReHLoss, PQLoss
+from ._loss import ReHLoss
from ._class import ReHLine, ReHLine_solver
from ._base import relu, rehu, make_fair_classification
diff --git a/rehline/_loss.py b/rehline/_loss.py
index 5ce3a43..25252e1 100644
--- a/rehline/_loss.py
+++ b/rehline/_loss.py
@@ -76,118 +76,3 @@ def __call__(self, x):
rehu_input = (self.rehu_coef.T * x[:,np.newaxis]).T + self.rehu_intercept
return np.sum(relu(relu_input), 0) + np.sum(rehu(rehu_input), 0)
-
-
-class PQLoss(object):
- """ PQLoss: continuous convex piecewise quandratic function (with a function converting to ReHLoss).
-
- Parameters
- ----------
-
- cutpoints : list of cutpoints
- cutpoints of the PQLoss, except -np.inf and np.inf
-
- quad_coef : {dict-like} of {'a': [], 'b': [], 'c': []}
- The quandratic coefficients in pieces of the PQLoss
- The i-th piece Q is: a[i]**2 * x**2 + b[i] * x + c[i]
-
- Example
- -------
- >>> import numpy as np
- >>> cutpoints = [0., 1.]
- >>> quad_coef = {'a': np.array([0., .5, 0.]), 'b': np.array([-1, 0., 1]), 'c': np.array([0., 0., -.5])}
- >>> test_loss = PQLoss(cutpoints, quad_coef)
- >>> x = np.arange(-2,2,.05)
- >>> test_loss(x)
- """
-
-
- def __init__(self, cutpoints, quad_coef):
- self.cutpoints = np.concatenate(([-np.inf], cutpoints, [np.inf]))
- self.quad_coef = quad_coef
- self.n_pieces = len(self.cutpoints) - 1
- self.min = 0
-
- def __call__(self, x):
- """ Evaluation of PQLoss
-
- out = quad_coef['a'][i]*x**2 + quad_coef['b'][i]*x + quad_coef['c'][i], if cutpoints[i] < x < cutpoints[i+1]
- """
- condlist, funclist = [], []
- x = np.array(x)
- assert len(self.quad_coef['a']) == self.n_pieces, "`cutpoints` and `quad_coef` are mismatched."
- assert len(self.quad_coef['b']) == self.n_pieces, "`cutpoints` and `quad_coef` are mismatched."
- assert len(self.quad_coef['c']) == self.n_pieces, "`cutpoints` and `quad_coef` are mismatched."
-
- y = np.zeros_like(x)
- for i in range(self.n_pieces):
- cond_tmp = (x > self.cutpoints[i])&(x <= self.cutpoints[i+1])
- y[cond_tmp] = self.quad_coef['a'][i]*x[cond_tmp]**2 + self.quad_coef['b'][i]*x[cond_tmp] + self.quad_coef['c'][i]
- return y
-
- def _2ReHLoss(self):
- relu_coef, relu_intercept = [], []
- rehu_coef, rehu_intercept, rehu_cut = [], [], []
- quad_coef = self.quad_coef.copy()
- cutpoints = self.cutpoints.copy()
- cutpoints = cutpoints[1:-1]
-
- ## evaluate cutpoints
- out_cut = self(cutpoints)
- ## move the loss function to the x-axis;
- if min(out_cut) > 0:
- self.min = min(out_cut)
- quad_coef['c'] -= self.min
- out_cut -= self.min
-
- ## remove a ReLU/ReHU function from this point; i-th point -> i-th or (i+1)-th interval
- ind_tmp = np.argmax(out_cut == 0.)
- ## Left
- if quad_coef['a'][ind_tmp] == 0.:
- ## +relu
- relu_coef.append(quad_coef['b'][ind_tmp])
- relu_intercept.append(quad_coef['c'][ind_tmp])
- if len(quad_coef['b'][:ind_tmp]) > 0:
- # remove relu for left intervals
- quad_coef['b'][:ind_tmp] -= quad_coef['b'][ind_tmp]
- quad_coef['c'][:ind_tmp] -= quad_coef['c'][ind_tmp]
- quad_coef['b'][ind_tmp], quad_coef['c'][ind_tmp] = 0., 0.
- else:
- ## +rehu
- if ind_tmp == 0:
- rehu_coef.append(-np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_intercept.append(-quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_cut.append(np.inf)
- else:
- rehu_coef.append(-np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_intercept.append(-quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_cut.append(-np.sqrt(2*quad_coef['a'][ind_tmp])*cutpoints[ind_tmp-1] - quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- if len(quad_coef['a'][:ind_tmp]) > 0:
- quad_coef['b'][:ind_tmp] -= 2*quad_coef['a'][ind_tmp]*cutpoints[ind_tmp] + quad_coef['b'][ind_tmp]
- quad_coef['c'][:ind_tmp] -= - quad_coef['a'][ind_tmp]*cutpoints[ind_tmp]**2 + quad_coef['c'][ind_tmp]
- quad_coef['a'][ind_tmp], quad_coef['b'][ind_tmp], quad_coef['c'][ind_tmp] = 0., 0., 0.
-
- ## Right
- if quad_coef['a'][ind_tmp+1] == 0.:
- ## +relu
- relu_coef.append(quad_coef['b'][ind_tmp+1])
- relu_intercept.append(quad_coef['c'][ind_tmp+1])
- if len(quad_coef['b'][:ind_tmp]) > 0:
- # remove relu for right intervals
- quad_coef['b'][ind_tmp+2:] -= quad_coef['b'][ind_tmp+1]
- quad_coef['c'][ind_tmp+2:] -= quad_coef['c'][ind_tmp+1]
- quad_coef['b'][ind_tmp+1], quad_coef['c'][ind_tmp+1] = 0., 0.
- else:
- ## +rehu
- if ind_tmp == len(cutpoints)-1:
- rehu_coef.append(np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_intercept.append(quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_cut.append(np.inf)
- else:
- rehu_coef.append(np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_intercept.append(quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- rehu_cut.append(np.sqrt(2*quad_coef['a'][ind_tmp])*cutpoints[ind_tmp-1] + quad_coef['b'][ind_tmp]/np.sqrt(2*quad_coef['a'][ind_tmp]))
- if len(quad_coef['a'][ind_tmp+2:]) > 0:
- quad_coef['b'][ind_tmp+2:] -= 2*quad_coef['a'][ind_tmp+1]*cutpoints[ind_tmp+1] + quad_coef['b'][ind_tmp+1]
- quad_coef['c'][ind_tmp+2:] -= - quad_coef['a'][ind_tmp+1]*cutpoints[ind_tmp+1]**2 + quad_coef['c'][ind_tmp+1]
- quad_coef['a'][ind_tmp+1], quad_coef['b'][ind_tmp+1], quad_coef['c'][ind_tmp+1] = 0., 0., 0.
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index 4a54ec0..0000000
--- a/requirements.txt
+++ /dev/null
@@ -1,101 +0,0 @@
-alabaster==0.7.13
-anyascii==0.3.2
-astroid==3.0.1
-asttokens==2.4.0
-attrs==23.1.0
-Babel==2.13.0
-backcall==0.2.0
-beautifulsoup4==4.12.2
-bleach==6.1.0
-certifi==2023.7.22
-cffi==1.16.0
-charset-normalizer==3.3.0
-cryptography==41.0.4
-decorator==5.1.1
-defusedxml==0.7.1
-docopt==0.6.2
-docutils==0.18.1
-exceptiongroup==1.1.3
-executing==2.0.0
-fastjsonschema==2.18.1
-idna==3.4
-imagesize==1.4.1
-importlib-metadata==6.8.0
-ipython==8.16.1
-jaraco.classes==3.3.0
-jedi==0.19.1
-jeepney==0.8.0
-Jinja2==3.1.2
-joblib==1.3.2
-jsonschema==4.19.1
-jsonschema-specifications==2023.7.1
-jupyter_client==8.4.0
-jupyter_core==5.4.0
-jupyterlab-pygments==0.2.2
-keyring==24.2.0
-markdown-it-py==3.0.0
-MarkupSafe==2.1.3
-matplotlib-inline==0.1.6
-mdurl==0.1.2
-mistune==3.0.2
-more-itertools==10.1.0
-nbclient==0.8.0
-nbconvert==7.9.2
-nbformat==5.9.2
-nbsphinx==0.9.3
-nh3==0.2.14
-numpy==1.26.1
-numpydoc==1.6.0
-packaging==23.2
-pandocfilters==1.5.0
-parso==0.8.3
-pexpect==4.8.0
-pickleshare==0.7.5
-pipreqs==0.4.13
-pkginfo==1.9.6
-platformdirs==3.11.0
-prompt-toolkit==3.0.39
-ptyprocess==0.7.0
-pure-eval==0.2.2
-pybind11==2.11.1
-pycparser==2.21
-Pygments==2.16.1
-python-dateutil==2.8.2
-PyYAML==6.0.1
-pyzmq==25.1.1
-readme-renderer==42.0
-referencing==0.30.2
-renku-sphinx-theme==0.3.0
-rfc3986==2.0.0
-rich==13.6.0
-rpds-py==0.10.6
-scikit-learn==1.3.1
-scipy==1.11.3
-SecretStorage==3.3.3
-six==1.16.0
-snowballstemmer==2.2.0
-soupsieve==2.5
-Sphinx<7
-sphinx-autoapi==3.0.0
-sphinx-autodoc-typehints==1.23.0
-sphinxcontrib-applehelp==1.0.7
-sphinxcontrib-devhelp==1.0.5
-sphinxcontrib-htmlhelp==2.0.4
-sphinxcontrib-jquery==4.1
-sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.6
-sphinxcontrib-serializinghtml==1.1.9
-stack-data==0.6.3
-tabulate==0.9.0
-threadpoolctl==3.2.0
-tinycss2==1.2.1
-tomli==2.0.1
-tornado==6.3.3
-traitlets==5.11.2
-twine==4.0.2
-typing_extensions==4.8.0
-urllib3==2.0.6
-wcwidth==0.2.8
-webencodings==0.5.1
-yarg==0.1.9
-zipp==3.17.0
diff --git a/setup.py b/setup.py
index 17a3f7b..de0afcf 100644
--- a/setup.py
+++ b/setup.py
@@ -2,10 +2,11 @@
from pathlib import Path
import zipfile
import requests
-from pybind11.setup_helpers import Pybind11Extension, build_ext
+from pybind11.setup_helpers import Pybind11Extension
from setuptools import setup
+from setuptools.command.build_ext import build_ext
-__version__ = "0.0.2"
+__version__ = "0.0.3"
# The main interface is through Pybind11Extension.
# * You can add cxx_std=11/14/17, and then build_ext can be removed.
@@ -67,11 +68,12 @@ def __str__(self) -> str:
url="https://github.com/softmin/ReHLine-python",
description="Regularized Composite ReLU-ReHU Loss Minimization with Linear Computation and Linear Convergence",
packages=["rehline"],
+ install_requires=["requests", "pybind11", "numpy", "scipy", "scikit-learn"],
ext_modules=ext_modules,
# extras_require={"test": "pytest"},
# Currently, build_ext only provides an optional "highest supported C++
# level" feature, but in the future it may provide more features.
cmdclass={"build_ext": build_ext},
zip_safe=False,
- python_requires=">=3.8",
+ python_requires=">=3.10",
)