From 6d3b54058d903ad513ba9dd7859a7a7fc1d83b44 Mon Sep 17 00:00:00 2001 From: Douwe Schulte Date: Tue, 14 Nov 2023 10:22:05 +0100 Subject: [PATCH] Version bump Signed-off-by: Douwe Schulte --- CHANGELOG.md | 2 ++ CITATION.cff | 2 +- batchfiles/basic.txt | 2 +- batchfiles/modelangelo.txt | 2 +- batchfiles/modelangelo_recombined.txt | 2 +- batchfiles/monoclonal.txt | 2 +- batchfiles/polyclonal.txt | 2 +- batchfiles/test_ma.txt | 2 +- stitch/stitch.csproj | 2 +- 9 files changed, 10 insertions(+), 8 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 50b835f0..35bcee7f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,7 @@ All releases can also be found here: https://github.com/snijderlab/stitch/releas # Upcoming Release * Added loading of sequences from mmCIF files, for ModelAngelo (#207, #217) +* Added loading of sequences from Peaks 11 and Peaks Ab * Added loading of sequences from Casanovo, pNovo, and MaxNovo (#192) * Added loading of spectra from Casanovo, pNovo, and MaxNovo (#195) * Added I/L disambiguation based on satellite ions (#193, #216, #218) @@ -21,6 +22,7 @@ All releases can also be found here: https://github.com/snijderlab/stitch/releas * Fixed leading insertions in reads placement displayed in a different colour, for more clarity in the alignment * Fixed bugs (#222, #230) * Performance improvements +* Many more small fixes and improvements Note * The benchmarks show a mostly very slightly positive result, with the caveat that I/L disambiguation is not automatically benchmarked yet because raw files are so big. diff --git a/CITATION.cff b/CITATION.cff index f4a007d9..969fe2a2 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,5 +1,5 @@ title: Stitch -version: 1.4.0 +version: 1.5.0-rc.1 abstract: Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling authors: - affiliation: Utrecht University diff --git a/batchfiles/basic.txt b/batchfiles/basic.txt index dfe44de5..6b1b693e 100644 --- a/batchfiles/basic.txt +++ b/batchfiles/basic.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 Runname : Basic run Input -> diff --git a/batchfiles/modelangelo.txt b/batchfiles/modelangelo.txt index 6e602182..1aa69804 100644 --- a/batchfiles/modelangelo.txt +++ b/batchfiles/modelangelo.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps Input -> diff --git a/batchfiles/modelangelo_recombined.txt b/batchfiles/modelangelo_recombined.txt index f365ee2a..fc8da74a 100644 --- a/batchfiles/modelangelo_recombined.txt +++ b/batchfiles/modelangelo_recombined.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps Input -> diff --git a/batchfiles/monoclonal.txt b/batchfiles/monoclonal.txt index d133b7a3..eddc1ace 100644 --- a/batchfiles/monoclonal.txt +++ b/batchfiles/monoclonal.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 Runname : Monoclonal Herceptin - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps diff --git a/batchfiles/polyclonal.txt b/batchfiles/polyclonal.txt index cc322552..7cc3938a 100644 --- a/batchfiles/polyclonal.txt +++ b/batchfiles/polyclonal.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 Runname : COVID 19 patient 14 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps diff --git a/batchfiles/test_ma.txt b/batchfiles/test_ma.txt index 0e0b9e3b..645180a7 100644 --- a/batchfiles/test_ma.txt +++ b/batchfiles/test_ma.txt @@ -1,5 +1,5 @@ -Run Info--------------- -Version : 1.4 +Version : 1.5 - Here the input can be defined, this will be used in the TemplateMatching and Recombine steps Input -> diff --git a/stitch/stitch.csproj b/stitch/stitch.csproj index 9e0e5ab5..c686c2e8 100644 --- a/stitch/stitch.csproj +++ b/stitch/stitch.csproj @@ -4,7 +4,7 @@ Exe net7.0 StandardRuleset.ruleset - 1.4.0 + 1.5.0-rc.1 true