Ontology definition

[alexlorenzo]

Hello,

I was wondering if you have a formal ontology definition for the following relationship links used in your project. While I can infer their meanings, having a more rigorous definition would be incredibly helpful.

Here is the list I’m referring to:

{ 0: 'ppi',
1: 'carrier',
2: 'enzyme',
3: 'target',
4: 'transporter',
5: 'contraindication',
6: 'indication',
7: 'off-label use',
8: 'synergistic interaction',
9: 'associated with',
10: 'parent-child',
11: 'phenotype absent',
12: 'phenotype present',
13: 'side effect',
14: 'interacts with',
15: 'linked to',
16: 'expression present',
17: 'expression absent'
}
Thank you

[Wuyxin]

Hey,

Please see the method section of https://www.nature.com/articles/s41597-023-01960-3 where it says how the edges are extracted and what their definitions are.