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FDR control #2357

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ShadoWyyyy opened this issue Apr 10, 2024 · 1 comment
Open

FDR control #2357

ShadoWyyyy opened this issue Apr 10, 2024 · 1 comment

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@ShadoWyyyy
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hello, good software, easy to use until I can not find q value settings, there is no option for setting q value or FDR threshold for final quality control of the results, or did I miss it ? I check every option in the XLSearch task because usually 0.05 is set for cross-linking.
@trishorts
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you are correct. for now you have to simply ignore anything in the output with a q-value greater than your desired tolerance.

I will create an issue and try to add this feature to a future release of MetaMorpheus. Please track this issue.

#2358

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@trishorts @ShadoWyyyy