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As we know, HTSlib source tree is also included during compilation process.
HTSlib source tree also needs to refer libdeflate, but configure does not create Makefile containing LIBS="-ldeflate blabla ..."
(refer Makefile line 243.)
so ... in line 33 to 35 of Makefile.am
## xxx_LDADD is some additional libraries besides $LIBS which could collect
## the libraries added by AC_CHECK_LIB
cellsnp_lite_LDADD = @HTSLIB_LIB@
would better to be modified as below,
## xxx_LDADD is some additional libraries besides $LIBS which could collect
## the libraries added by AC_CHECK_LIB
cellsnp_lite_LDADD = @HTSLIB_LIB@ -ldeflate
so I solved compilation problem by fixing the automake script as above.
How would you think about it?
The text was updated successfully, but these errors were encountered:
As we know, HTSlib source tree is also included during compilation process.
HTSlib source tree also needs to refer libdeflate, but configure does not create Makefile containing LIBS="-ldeflate blabla ..."
(refer Makefile line 243.)
so ... in line 33 to 35 of Makefile.am
would better to be modified as below,
so I solved compilation problem by fixing the automake script as above.
How would you think about it?
The text was updated successfully, but these errors were encountered: