update and run pre-commit #547
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| name: Python tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| create: | |
| branches: [ main ] | |
| tags: [ '**' ] | |
| schedule: | |
| - cron: "0 4 * * MON" | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.11"] | |
| mne-version: [mne-stable] | |
| include: | |
| # Test mne development version only on ubuntu | |
| - platform: ubuntu-latest | |
| python-version: "3.11" | |
| mne-version: mne-main | |
| run-as-extra: true | |
| runs-on: ${{ matrix.platform }} | |
| env: | |
| TZ: Europe/Berlin | |
| FORCE_COLOR: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('setup.cfg') }}-${{ hashFiles('requirements-dev.txt') }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-dev.txt | |
| pip install -e . | |
| - name: Install MNE-Python (development version) | |
| if: matrix.mne-version == 'mne-main' | |
| run: | | |
| pip install git+https://github.com/mne-tools/mne-python.git@main | |
| - name: Check installed versions | |
| run: | | |
| mne sys_info | |
| - name: Check formatting | |
| if: matrix.platform == 'ubuntu-latest' | |
| run: | | |
| flake8 --docstring-convention numpy . | |
| check-manifest . | |
| pre-commit run --all-files || ( git status --short ; git diff ; exit 1 ) | |
| - name: Test with pytest | |
| run: | | |
| pytest tests/ --cov=pyprep/ --cov-report=xml --cov-config=setup.cfg --verbose -s | |
| - name: Build docs | |
| run: | | |
| make -C docs/ clean | |
| make -C docs/ html | |
| - name: Upload artifacts | |
| if: matrix.platform == 'ubuntu-latest' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: docs-artifact | |
| path: docs/_build/html | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # not required but might help API rate limits | |
| files: ./coverage.xml |