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Dynamic topology phase IV #481
Dynamic topology phase IV #481
Commits on Aug 15, 2024
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Commits on Aug 16, 2024
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Commits on Aug 20, 2024
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Commits on Aug 21, 2024
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Commits on Sep 3, 2024
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Commits on Sep 7, 2024
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Commits on Sep 11, 2024
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Bump step-security/harden-runner from 2.9.1 to 2.10.0 (sandialabs#492)
Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.9.1 to 2.10.0. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@5c7944e...446798f) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Lossy compression (sandialabs#464)
* EXODUS: Add support for lossy compression via netCDF quantize method * IOSS: Add support for lossy compression specifying NSD for netCDF quantize method * EXODUS: Update version date * EXODUS: Add some error checking on nsd values * EXODUS: Check if Quantization supported; include in config output * EXODUS: Cleaning up new compression support * EXODUS: Fix error handling code * EXODUS: Better error checking on compression * IOSS: Support for zstd compression * IOSS: Handle building with no netCDF-4 capability * IOSS: Change gold files to netcdf-3 so work without hdf5-supported netCDF * CI: See if can figure out intel build failure * CI: Fix hdf5 version warning message * CI: Turn on plugins; support new syntax * EXODUS: Only flush stderr if written to Signed-off-by: Greg Sjaardema <gdsjaar@sandia.gov> * Tweak compression additions * CI: Fix intel build script syntax error * EXODUS: Support new netCDF with changed _FillValue * IOSS: Fix so latest fmt version works * IOSS: Catalyst API 2 (sandialabs#463) * IOSS: Catalyst API 2 Added support to database for using my_processor and processor_count IOSS properties when operating in serial parallel mode and reading Conduit files. * IOSS: Catalyst API 2 Changed Conduit serial parallel test to use files from the one MPI rank can.ex2 test. --------- Co-authored-by: Greg Sjaardema <gsjaardema@gmail.com> * Fix export symbols (sandialabs#465) * IOSS: Catalyst API 2 (sandialabs#466) Create the cell_ids and cell_node_ids fields for a StructuredBlock when asked for by a reading application, if these fields are not already stored in the Conduit data. Uses the get_cell_ids() and get_cell_node_ids() methods on StructuredBlock. * CI: Remove hdf5-1.8 testing * IOSS: Catalyst API 2 (sandialabs#463) * IOSS: Catalyst API 2 Added support to database for using my_processor and processor_count IOSS properties when operating in serial parallel mode and reading Conduit files. * IOSS: Catalyst API 2 Changed Conduit serial parallel test to use files from the one MPI rank can.ex2 test. --------- Co-authored-by: Greg Sjaardema <gsjaardema@gmail.com> * NEM_SPREAD: Add missing include file * CI: Enable netCDF quantize option * CI: Support newest netCDF; fmt * Enable new compression options * EXODUS: Fix non-hdf5 build * EXODUS: Do not commit the kluge to repository * IOSS: See if can fix spack ci build * CI: Spack build should not run on PR * CI: Spack build on master only [ci skip] * CI: Fix spack workflow syntax [ci skip] * IOSS: Add progress output to chain/face generation * IOSS: Reduce Face memory * EXODUS: Better control over exodus verbosity * EXODUS:, IOSS: Add bzip2 compression support * Further testing of non-lossy compression with plugins * CI: Update cmake-sems to work with current sems * Default netcdf should be 4.9.2 Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com> * Clean up copyright dates Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com> * Clean up copyright dates Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com> * accidentally added to pr; removed Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com> --------- Signed-off-by: Greg Sjaardema <gdsjaar@sandia.gov> Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com> Co-authored-by: Greg Sjaardema <gdsjaar@sandia.gov> Co-authored-by: tjotaha <tjotaha@sandia.gov> Co-authored-by: Spiros Tsalikis <spiros.tsalikis@kitware.com>
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Commits on Sep 23, 2024
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Commits on Sep 25, 2024
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Commits on Sep 26, 2024
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Commits on Oct 3, 2024
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Merge branch 'master' into DynamicTopology-PhaseIV
Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com>
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Commits on Oct 4, 2024
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Commits on Oct 8, 2024
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Fix issue with invalid exodus file pointer
I think this is the correct change (deleting this block of code) since `handle_output_file` is returning a `m_exodusFilePtr` and sets`m_groupName`, so that is redundant with calling `ex_get_group_id` and even worse, `ex_get_group_id` is looking for a child group of itself... I'm not sure whether the code in this block is needed for an input file though...
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Commits on Oct 9, 2024
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IOSS: Remove commented out code
Remove code commented out in last commit.
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Commits on Oct 14, 2024
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Merge branch 'master' into DynamicTopology-PhaseIV
Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com>
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Commits on Oct 16, 2024
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Bump sphinx from 8.1.1 to 8.1.3 in /cmake/tribits/doc/sphinx (sandial…
…abs#523) Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 8.1.1 to 8.1.3. - [Release notes](https://github.com/sphinx-doc/sphinx/releases) - [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst) - [Commits](sphinx-doc/sphinx@v8.1.1...v8.1.3) --- updated-dependencies: - dependency-name: sphinx dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump github/codeql-action from 3.26.12 to 3.26.13 (sandialabs#524)
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.26.12 to 3.26.13. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@c36620d...f779452) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Bump ubuntu from
b359f10
toab64a83
in /docker/seacas (sandialabs……#525) Bumps ubuntu from `b359f10` to `ab64a83`. --- updated-dependencies: - dependency-name: ubuntu dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Greg Sjaardema <gsjaardema@gmail.com>
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Bump ubuntu from
b359f10
toab64a83
in /docker/exodus (sandialabs……#526) Bumps ubuntu from `b359f10` to `ab64a83`. --- updated-dependencies: - dependency-name: ubuntu dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Merge branch 'master' into DynamicTopology-PhaseIV
Signed-off-by: Greg Sjaardema <gsjaardema@gmail.com>
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