EXODUS: Partial fix for handling of attributes in grouped exodus files #1625
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Intel OneAPI build | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow}}-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-deps: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| compiler: [ intel, mpi ] | |
| hdf5: [ V114 ] | |
| netcdf: [ 4.9.2 ] | |
| cgns: [ 4.4.0 ] | |
| defaults: | |
| run: | |
| shell: bash --noprofile --norc {0} | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| egress-policy: audit | |
| - name: Maximize build space | |
| uses: easimon/maximize-build-space@fc881a613ad2a34aca9c9624518214ebc21dfc0c # master | |
| with: | |
| root-reserve-mb: 30000 | |
| remove-dotnet: 'true' | |
| remove-android: 'true' | |
| remove-haskell: 'true' | |
| remove-codeql: 'true' | |
| - uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 | |
| - name: setup repo | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt-get update | |
| - name: install | |
| run: | | |
| sudo apt-get install -y intel-basekit | |
| sudo apt-get install -y intel-oneapi-common-vars | |
| sudo apt-get install -y intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| sudo apt-get install -y intel-oneapi-compiler-fortran | |
| sudo apt-get install -y intel-oneapi-mpi | |
| sudo apt-get install -y intel-oneapi-mpi-devel | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | |
| ### | |
| # Installing TPL | |
| ### | |
| - name: Cache TPL-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| id: cache-TPL | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| key: TPL-v3intel-${{ runner.os }}-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| - name: Build TPL-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| if: steps.cache-TPL.outputs.cache-hit != 'true' | |
| run: | | |
| echo $HOME | |
| set -x | |
| source /opt/intel/oneapi/setvars.sh | |
| printenv >> $GITHUB_ENV | |
| COMPILER=${{ matrix.compiler }} H5VERSION=${{ matrix.hdf5}} GNU_PARALLEL=OFF INSTALL_PATH=${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} ./install-tpl.sh | |
| ls ${HOME} && ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| seacas-build: | |
| needs: build-deps | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| compiler: [ intel, mpi ] | |
| hdf5: [ V114 ] | |
| netcdf: [ 4.9.2 ] | |
| cgns: [ 4.4.0 ] | |
| steps: | |
| - name: Harden Runner | |
| uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
| with: | |
| egress-policy: audit | |
| - name: Maximize build space | |
| uses: easimon/maximize-build-space@fc881a613ad2a34aca9c9624518214ebc21dfc0c # master | |
| with: | |
| root-reserve-mb: 30000 | |
| remove-dotnet: 'true' | |
| remove-android: 'true' | |
| remove-haskell: 'true' | |
| remove-codeql: 'true' | |
| - uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 | |
| - name: setup repo | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| sudo echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt-get update | |
| - name: install | |
| run: | | |
| sudo apt-get install -y intel-basekit | |
| sudo apt-get install -y intel-oneapi-common-vars | |
| sudo apt-get install -y intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| sudo apt-get install -y intel-oneapi-compiler-fortran | |
| sudo apt-get install -y intel-oneapi-mpi | |
| sudo apt-get install -y intel-oneapi-mpi-devel | |
| - name: Install System dependencies | |
| shell: bash -l {0} | |
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | |
| - name: Fetch TPL Cache | |
| id: cache-TPL | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| key: TPL-v3intel-${{ runner.os }}-${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} | |
| - name: Check Cache | |
| shell: bash -l {0} | |
| run: ls ${HOME} && ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} && ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| ### | |
| # Configure and build | |
| ### | |
| - name: List directory | |
| shell: bash -l {0} | |
| run: | | |
| echo $HOME | |
| ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/lib | |
| ls ${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }}/include | |
| - name: Run cmake | |
| shell: bash -l {0} | |
| run: | | |
| echo $HOME | |
| mkdir build | |
| cd build | |
| source /opt/intel/oneapi/setvars.sh | |
| echo "------------" | |
| ls /opt/intel/oneapi/ | |
| echo "------------" | |
| ls /opt/intel/oneapi/2024.2/ | |
| echo "------------" | |
| ls /opt/intel/oneapi/2024.2/bin/ | |
| echo "------------" | |
| export PATH=/opt/intel/oneapi/2024.2/bin/:$PATH | |
| export LD_LIBRARY_PATH=/opt/intel/oneapi/2024.2/lib/:$LD_LIBRARY_PATH | |
| printenv >> $GITHUB_ENV | |
| NUMPROCS=2 COMPILER=${{ matrix.compiler }} INSTALL_PATH=${HOME}/environments/${{ matrix.compiler }}-${{ matrix.hdf5 }}-${{ matrix.netcdf }}-${{ matrix.cgns }} bash ../cmake-config | |
| - name: Build | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| make -j 4 | |
| if: ${{ success() }} | |
| - name: Install | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| make -j 4 install | |
| if: ${{ success() }} | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| ctest -j 4 --output-on-failure | |
| if: ${{ success() }} | |
| # - name: Compile | |
| # run: | | |
| # source /opt/intel/oneapi/setvars.sh | |
| # printenv >> $GITHUB_ENV | |
| # ifort test.f90 -o test_program | |
| # mpiifort test2.f90 -o mpitest | |
| # - name: "Test the code" | |
| # run: | | |
| # echo "Running the tests using the Intel oneapi fortran compiler" | |
| # cd tests/test01 | |
| # mpirun -np 1 $HOME/work/reponame/reponame/mpitest | |
| # ./$HOME/work/reponame/reponame/test_program |