DESCRIPTION

Package: OmnipathR
Type: Package
Title: OmniPath web service client and more
Version: 3.15.1
Authors@R: c(
    person(
        given = "Alberto",
        family = "Valdeolivas",
        role = c("aut"),
        email = "alvaldeolivas@gmail.com",
        comment = c(ORCID = "0000-0001-5482-9023")),
    person(
        given = "Denes",
        family = "Turei",
        role = c("cre", "aut"),
        email = "turei.denes@gmail.com",
        comment = c(ORCID = "0000-0002-7249-9379")),
    person(
        given = "Attila",
        family = "Gabor",
        role = "aut",
        comment = c(ORCID = "0000-0002-0776-1182")),
    person(
        given = "Diego",
        family = "Mananes",
        role = "aut",
        comment = c(ORCID = "0000-0001-7247-6794")),
    person(
        given = "Aurelien",
        family = "Dugourd",
        role = "aut",
        comment = c(ORCID = "0000-0002-0714-028X")))
Description: A client for the OmniPath web service
    (https://www.omnipathdb.org) and many other resources.
    It also includes functions to transform and pretty print
    some of the downloaded data, functions to access a number
    of other resources such as BioPlex, ConsensusPathDB, EVEX,
    Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome,
    HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway,
    Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF
    census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR
    features a close integration  with the NicheNet method for
    ligand activity prediction from transcriptomics data, and its
    R implementation `nichenetr` (available only on github).
License: MIT + file LICENSE
URL: https://r.omnipathdb.org/
BugReports: https://github.com/saezlab/OmnipathR/issues
biocViews: GraphAndNetwork, Network, Pathways, Software, ThirdPartyClient,
    DataImport, DataRepresentation, GeneSignaling, GeneRegulation,
    SystemsBiology, Transcriptomics, SingleCell, Annotation, KEGG
Encoding: UTF-8
VignetteBuilder: knitr
Depends:
    R(>= 4.0)
Imports:
    checkmate,
    crayon,
    curl,
    digest,
    dplyr(>= 1.1.0),
    httr,
    igraph,
    jsonlite,
    later,
    logger,
    lubridate,
    magrittr,
    progress,
    purrr,
    rappdirs,
    readr(>= 2.0.0),
    readxl,
    rlang,
    rmarkdown,
    RSQLite,
    R.utils,
    rvest,
    stats,
    stringi,
    stringr,
    tibble,
    tidyr,
    tidyselect,
    tools,
    utils,
    vctrs,
    withr,
    XML,
    xml2,
    yaml,
    zip
Suggests:
    BiocStyle,
    bookdown,
    ggplot2,
    ggraph,
    gprofiler2,
    knitr,
    mlrMBO,
    parallelMap,
    ParamHelpers,
    Rgraphviz,
    R.matlab,
    sigmajs,
    smoof,
    supraHex,
    testthat
RoxygenNote: 7.3.2