From c1d3795c1d10e1e9571b207995da9fd9bdc46c12 Mon Sep 17 00:00:00 2001 From: rodrigo Date: Fri, 21 Oct 2016 10:40:15 -0200 Subject: [PATCH] installation tweaks --- README.md | 11 ++++++++++- cazy_parser.egg-info/PKG-INFO | 20 ++++++++++---------- cazy_parser.egg-info/SOURCES.txt | 3 +-- cazy_parser.egg-info/top_level.txt | 1 - setup.py | 2 +- 5 files changed, 22 insertions(+), 15 deletions(-) diff --git a/README.md b/README.md index 1daf614..cdabaa2 100644 --- a/README.md +++ b/README.md @@ -14,8 +14,17 @@ If you are using this tool, **make sure to cite and visit the CAZy website** *cazy-parser* is a tool that extract information from [CAZy](http://www.cazy.org/) in a more usable and readable format. Firstly, a script reads the HTML structure and creates a mirror of the database as a tab delimited file. Secondly, information is extracted from the database according to user inputted parameters and presented to the user as a set of accession codes. ## Installation -`pip install cazy-parser` +`$ pip install cazy-parser` +or + +Download latest source from [this link](https://pypi.python.org/pypi/cazy-parser) + +``` +$ tar -zxvf cazy-parser-x.x.x.tar.gz +$ cd cazy-parser-x.x.x +$ python setup.py install +``` ## Usage *Please note that both steps require an internet conection* diff --git a/cazy_parser.egg-info/PKG-INFO b/cazy_parser.egg-info/PKG-INFO index 47e7294..1d84a04 100644 --- a/cazy_parser.egg-info/PKG-INFO +++ b/cazy_parser.egg-info/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 1.1 Name: cazy-parser -Version: 1.0.0b16 +Version: 1.0.1 Summary: A way to extract specific information from CAZy Home-page: https://github.com/rodrigovrgs/cazy-parser Author: Rodrigo Honorato @@ -8,27 +8,27 @@ Author-email: rvhonorato@gmail.com License: GPL3 Description: cazy-parser ============ - + The `Carbohydrate-Active enZYmes Database (CAZy) `_ provides access to a sequence based classification of enzyme that are responsible for the assembly, modification and breakdown of oligo and polysaccharides. - + This database has been online for eighteen years providing relevant genomic, structural and biochemical data on carbohydrate-active enzymes, such asglycoside hydrolases, glycosyl transferases, polysaccharide lyases, carbohydrateesterases and similar enzymes with auxiliary activities. The database isorganized and presented to the user as a series of highly annotated HTML tables. - + This script provides a way to extract information from the database according to user need. - + Installation ============ :: - + pip install cazy-parser - + Documentation ============= - + Please refer to the `project page `_ for usage and more information - + Keywords: cazy database datamining Platform: UNKNOWN -Classifier: Development Status :: 4 - Beta +Classifier: Development Status :: 5 - Production/Stable Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering :: Bio-Informatics Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3) diff --git a/cazy_parser.egg-info/SOURCES.txt b/cazy_parser.egg-info/SOURCES.txt index 3ed2169..d9af062 100644 --- a/cazy_parser.egg-info/SOURCES.txt +++ b/cazy_parser.egg-info/SOURCES.txt @@ -9,5 +9,4 @@ cazy_parser.egg-info/SOURCES.txt cazy_parser.egg-info/dependency_links.txt cazy_parser.egg-info/entry_points.txt cazy_parser.egg-info/requires.txt -cazy_parser.egg-info/top_level.txt -paper/__init__.py \ No newline at end of file +cazy_parser.egg-info/top_level.txt \ No newline at end of file diff --git a/cazy_parser.egg-info/top_level.txt b/cazy_parser.egg-info/top_level.txt index e3387d0..4ca4a79 100644 --- a/cazy_parser.egg-info/top_level.txt +++ b/cazy_parser.egg-info/top_level.txt @@ -1,2 +1 @@ cazy_parser -paper diff --git a/setup.py b/setup.py index 0d61807..0e9301e 100644 --- a/setup.py +++ b/setup.py @@ -29,7 +29,7 @@ def run(self): # Versions should comply with PEP440. For a discussion on single-sourcing # the version across setup.py and the project code, see # https://packaging.python.org/en/latest/single_source_version.html - version='1.0.0', + version='1.0.1', description='A way to extract specific information from CAZy', long_description=long_description,