From d6367834b39bd19f8c8d91839498065c1b44d264 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sat, 7 Oct 2023 22:58:40 -0400 Subject: [PATCH 01/18] convert some wasm Point, Region Duals to f64s --- src/regions.rs | 17 ++++++++--------- 1 file changed, 8 insertions(+), 9 deletions(-) diff --git a/src/regions.rs b/src/regions.rs index f43b4e2..5d3aa48 100644 --- a/src/regions.rs +++ b/src/regions.rs @@ -3,12 +3,11 @@ use std::collections::BTreeSet; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{dual::{Dual, D}, r2::R2, component, set::Set, region}; - +use crate::{dual::Dual, r2::R2, component, set::Set, region}; #[derive(Clone, Debug, Tsify, Serialize, Deserialize)] pub struct Point { - pub p: R2, + pub p: R2, pub edge_idxs: Vec, } @@ -33,20 +32,20 @@ pub struct Segment { pub struct Region { pub key: String, pub segments: Vec, - pub area: Dual, + pub area: f64, pub container_set_idxs: Vec, pub child_component_keys: Vec, } -impl From<®ion::Region> for Region { - fn from(region: ®ion::Region) -> Self { +impl From<®ion::Region> for Region { + fn from(region: ®ion::Region) -> Self { Region { key: region.key.clone(), segments: region.segments.iter().map(|s| Segment { edge_idx: s.edge.borrow().idx, fwd: s.fwd, }).collect(), - area: region.area(), + area: region.area().v(), container_set_idxs: region.container_set_idxs.clone().into_iter().collect(), child_component_keys: region.child_components.iter().map(|c| c.borrow().key.0.clone()).collect(), } @@ -65,10 +64,10 @@ pub struct Component { } impl Component { - pub fn new(component: &component::Component) -> Self { + pub fn new(component: &component::Component) -> Self { let sets: Vec> = component.sets.iter().map(|set| set.borrow().v()).collect(); let points = component.nodes.iter().map(|n| Point { - p: n.borrow().p.clone(), + p: n.borrow().p.v(), edge_idxs: n.borrow().edges.iter().map(|e| e.borrow().idx).collect(), }).collect(); let edges = component.edges.iter().map(|e| Edge { From d911d13b70c4927358630fc38ba5163309dd136e Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sat, 7 Oct 2023 23:30:35 -0400 Subject: [PATCH 02/18] convert area exports from Duals to floats --- src/step.rs | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/step.rs b/src/step.rs index 5a5c7b3..23c51e4 100644 --- a/src/step.rs +++ b/src/step.rs @@ -26,8 +26,8 @@ pub struct Step { #[derive(Clone, Debug, Tsify, Serialize, Deserialize)] pub struct Error { pub key: String, - pub actual_area: Option, - pub actual_frac: Dual, + pub actual_area: Option, + pub actual_frac: f64, pub target_area: f64, pub target_frac: f64, pub error: Dual, @@ -39,8 +39,8 @@ impl Display for Error { "{}: err {:.3}, target {:.3} ({:.3}), actual {} → {:.3}", self.key, self.error.v(), self.target_area, self.target_frac, - self.actual_area.clone().map(|a| format!("{:.3}", a.v())).unwrap_or_else(|| "-".to_string()), - self.actual_frac.v(), + self.actual_area.clone().map(|a| format!("{:.3}", a)).unwrap_or_else(|| "-".to_string()), + self.actual_frac, ) } } @@ -188,9 +188,9 @@ impl Step { key.clone(), Error { key: key.clone(), - actual_area, + actual_area: actual_area.map(|a| a.v()), target_area: target_area.clone(), - actual_frac, + actual_frac: actual_frac.v(), target_frac, error, } From e8561fbaba48355f7fad6e693eefe0eb431d27a7 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 10:16:14 -0400 Subject: [PATCH 03/18] add History, mpower test --- Cargo.toml | 2 +- src/history.rs | 32 ++++++++++++++++++++++++++++++++ src/lib.rs | 1 + src/model.rs | 42 +++++++++++++++++++++++++++++++++++------- 4 files changed, 69 insertions(+), 8 deletions(-) create mode 100644 src/history.rs diff --git a/Cargo.toml b/Cargo.toml index a4a1466..56e2dc6 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -15,7 +15,7 @@ log = "0.4.20" nalgebra = { version = "0.32.3" } num-dual = { version = "0.7.1" } num-traits = "0.2.16" -ordered-float = "3.9.1" +ordered-float = "4.1.0" roots = "0.0.8" serde = { version = "1.0.183", features = ["derive"] } serde-wasm-bindgen = "0.6.0" diff --git a/src/history.rs b/src/history.rs new file mode 100644 index 0000000..f467793 --- /dev/null +++ b/src/history.rs @@ -0,0 +1,32 @@ +use serde::{Serialize, Deserialize}; +use tsify::Tsify; + +use crate::{shape::Shape, step, model::Model}; + +#[derive(Debug, Clone, PartialEq, Tsify, Serialize, Deserialize)] +pub struct Step { + pub error: f64, + pub shapes: Vec>, +} + +impl From for Step { + fn from(s: step::Step) -> Self { + Step { + error: s.error.v(), + shapes: s.shapes.into_iter().map(|s| s.into()).collect(), + } + } +} + +#[derive(Debug, Clone, Tsify, Serialize, Deserialize)] +pub struct History { + pub steps: Vec, +} + +impl From for History { + fn from(m: Model) -> Self { + History { + steps: m.steps.into_iter().map(|s| s.into()).collect(), + } + } +} \ No newline at end of file diff --git a/src/lib.rs b/src/lib.rs index 92e2a6f..d802162 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -18,6 +18,7 @@ pub mod float_vec; pub mod float_wrap; pub mod fmt; pub mod gap; +pub mod history; pub mod intersect; pub mod intersection; pub mod node; diff --git a/src/model.rs b/src/model.rs index 5cbd4c2..7411ac8 100644 --- a/src/model.rs +++ b/src/model.rs @@ -1,5 +1,3 @@ - - use log::{info, debug, warn}; use serde::{Deserialize, Serialize}; use tsify::Tsify; @@ -219,6 +217,25 @@ mod tests { Ok(df) } + // Values from https://jitc.bmj.com/content/jitc/10/2/e003027.full.pdf?with-ds=yes (pg. 13) + static MPOWER: [ (&str, f64); 15 ] = [ + ( "0---", 42. ), + ( "-1--", 15. ), + ( "--2-", 10. ), + ( "---3", 182. ), + ( "01--", 16. ), + ( "0-2-", 10. ), + ( "0--3", 60. ), + ( "-12-", 12. ), + ( "-1-3", 23. ), + ( "--23", 44. ), + ( "012-", 25. ), + ( "01-3", 13. ), + ( "0-23", 13. ), + ( "-123", 18. ), + ( "0123", 11. ), + ]; + #[derive(Deref)] pub struct CoordGetter(pub Box f64>); @@ -431,16 +448,27 @@ mod tests { ( e2, vec![ D; 5 ] ), ( e3, vec![ D; 5 ] ), ]; - check(inputs, VARIANT_CALLERS, "variant_callers_diag", 0.5, 100) + check(inputs, VARIANT_CALLERS, "variant_callers_diag", 0.5, 100); } #[test] fn webapp_bug1() { let inputs = vec![ - ( xyrrt(0.7319754427924579, -2.1575408875986393e-16, 1.2448120381919545, 0.9798569195408114, 4.8268551130929626e-17), vec![ D; 5 ] ), - ( xyrrt(-1.5088966066610663, 1.0407479831736694e-16, 1.97886101672388, 2.178313681735663, -3.664600361442153e-17), vec![ D; 5 ] ), - ( xyrrt(2.2769211638686104, 1.2002706758532478e-16, 2.8997542067333413, 2.8817259204197674, 2.976941513813048e-17), vec![ D; 5 ] ), + ( xyrrt( 0.7319754427924579, -2.1575408875986393e-16, 1.2448120381919545, 0.9798569195408114, 4.8268551130929626e-17), vec![ D; 5 ] ), + ( xyrrt(-1.5088966066610663, 1.0407479831736694e-16, 1.97886101672388 , 2.178313681735663 , -3.664600361442153e-17 ), vec![ D; 5 ] ), + ( xyrrt( 2.2769211638686104, 1.2002706758532478e-16, 2.8997542067333413, 2.8817259204197674, 2.976941513813048e-17 ), vec![ D; 5 ] ), + ]; + check(inputs, FIZZ_BUZZ_BAZZ, "webapp_bug1", 0.1, 100); + } + + #[test] + fn mpower_spike() { + let inputs = vec![ + ( xyrrt(-0.7795647537412774 , 1.3864596428989213, 0.9779421231703596, 2.116221516077534 , 0.5929345063728056 ), vec![ D; 5 ] ), + ( xyrrt(-0.334020975375785 , 2.2012585482178664, 0.8217004750509326, 1.8949774045049235, 0.8930950419653292 ), vec![ D; 5 ] ), + ( xyrrt( 0.15416800838315917, 2.5522066048894576, 2.052620045044561 , 0.7844775004499663, 0.47084646751887366), vec![ D; 5 ] ), + ( xyrrt( 0.9594177207338993 , 1.5988440867036033, 2.417618150694609 , 1.4130685330891937, 0.8644165147959761 ), vec![ D; 5 ] ), ]; - check(inputs, FIZZ_BUZZ_BAZZ, "webapp_bug1", 0.1, 100) + check(inputs, MPOWER, "mpower_spike", 0.1, 2); } } From 2434c2825d90d7fc6141a8d8650a35270ba2a1a2 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 12:01:43 -0400 Subject: [PATCH 04/18] CoordGetter, testdata refactor drop gradient values from testdata, add col headings --- src/circle.rs | 18 +- src/coord_getter.rs | 32 +++ src/ellipses/xyrr.rs | 16 +- src/ellipses/xyrrt.rs | 18 +- src/lib.rs | 1 + src/model.rs | 105 ++++----- src/shape.rs | 53 +++-- testdata/centroid_repel/linux.csv | 203 +++++++++--------- testdata/centroid_repel/macos.csv | 203 +++++++++--------- .../disjoint_variant_callers_bug/linux.csv | 203 +++++++++--------- .../disjoint_variant_callers_bug/macos.csv | 203 +++++++++--------- .../fizz_buzz_bazz_circle_ellipses/linux.csv | 203 +++++++++--------- .../fizz_buzz_bazz_circle_ellipses/macos.csv | 203 +++++++++--------- testdata/fizz_buzz_bazz_circles/linux.csv | 203 +++++++++--------- testdata/fizz_buzz_bazz_circles/macos.csv | 203 +++++++++--------- testdata/fizz_buzz_circle_ellipse/linux.csv | 113 +++++----- testdata/fizz_buzz_circle_ellipse/macos.csv | 113 +++++----- testdata/fizz_buzz_circles/linux.csv | 145 ++++++------- testdata/fizz_buzz_circles/macos.csv | 147 ++++++------- testdata/fizz_buzz_ellipses_diag/linux.csv | 203 +++++++++--------- testdata/fizz_buzz_ellipses_diag/macos.csv | 203 +++++++++--------- testdata/mpower_spike/linux.csv | 4 + testdata/mpower_spike/macos.csv | 4 + testdata/two_circle_containment/linux.csv | 203 +++++++++--------- testdata/two_circle_containment/macos.csv | 203 +++++++++--------- testdata/two_circles_disjoint/linux.csv | 203 +++++++++--------- testdata/two_circles_disjoint/macos.csv | 203 +++++++++--------- testdata/two_circles_tangent/linux.csv | 203 +++++++++--------- testdata/two_circles_tangent/macos.csv | 203 +++++++++--------- testdata/variant_callers/linux.csv | 203 +++++++++--------- testdata/variant_callers/macos.csv | 203 +++++++++--------- testdata/variant_callers_diag/linux.csv | 203 +++++++++--------- testdata/variant_callers_diag/macos.csv | 203 +++++++++--------- testdata/webapp_bug1/linux.csv | 203 +++++++++--------- testdata/webapp_bug1/macos.csv | 203 +++++++++--------- 35 files changed, 2643 insertions(+), 2592 deletions(-) create mode 100644 src/coord_getter.rs create mode 100644 testdata/mpower_spike/linux.csv create mode 100644 testdata/mpower_spike/macos.csv diff --git a/src/circle.rs b/src/circle.rs index 7a34a41..c57bc4d 100644 --- a/src/circle.rs +++ b/src/circle.rs @@ -6,20 +6,17 @@ use serde::{Deserialize, Serialize}; use tsify::Tsify; use crate::{ dual::{D, Dual}, - r2::R2, rotate::{Rotate as _Rotate, RotateArg}, shape::{Duals, Shape, Shapes}, transform::{Projection, CanTransform}, transform::Transform::{Rotate, Scale, ScaleXY, Translate, self}, ellipses::xyrr::{XYRR, UnitCircleGap}, sqrt::Sqrt, math::{is_normal::IsNormal, recip::Recip}, to::To, intersect::Intersect + r2::R2, rotate::{Rotate as _Rotate, RotateArg}, shape::{Duals, Shape, Shapes}, transform::{Projection, CanTransform}, transform::Transform::{Rotate, Scale, ScaleXY, Translate, self}, ellipses::xyrr::{XYRR, UnitCircleGap}, sqrt::Sqrt, math::{is_normal::IsNormal, recip::Recip}, to::To, intersect::Intersect, coord_getter::{CoordGetter, coord_getter} }; #[derive(Debug, Clone, Copy, From, PartialEq, Tsify, Serialize, Deserialize)] pub struct Circle { - // pub idx: usize, pub c: R2, pub r: D, } impl Eq for Circle {} -// static getters: [ Box) -> f64>; 3 ] = ; - impl Circle { pub fn dual(&self, duals: &Duals) -> Circle { let x = Dual::new(self.c.x, duals[0].clone()); @@ -28,13 +25,12 @@ impl Circle { let c = R2 { x, y }; Circle::from((c, r)) } - pub fn getters() -> [ Box) -> f64>; 3 ] { - [ - Box::new(move |c: Circle| c.c.x), - Box::new(move |c: Circle| c.c.y), - Box::new(move |c: Circle| c.r), - ] - } + + pub fn getters() -> [ CoordGetter; 3 ] {[ + coord_getter("cx", |c: Self| c.c.x), + coord_getter("cy", |c: Self| c.c.y), + coord_getter( "r", |c: Self| c.r ), + ]} pub fn at_y(&self, y: f64) -> Vec { let uy = (y - self.c.y) / self.r; let uy2 = uy * uy; diff --git a/src/coord_getter.rs b/src/coord_getter.rs new file mode 100644 index 0000000..6b70afc --- /dev/null +++ b/src/coord_getter.rs @@ -0,0 +1,32 @@ +use std::ops::Deref; + +pub struct CoordGetter { + pub name: String, + pub get: Box f64>, +} + +impl<'a, In: 'a> Deref for CoordGetter { + type Target = Box f64>; + fn deref(&self) -> &Self::Target { + &self.get + } +} + +impl CoordGetter { + pub fn new(name: &str, get: Box f64>) -> Self { + Self { name: name.to_string(), get } + } +} + +impl<'a: 'static, In: 'a> CoordGetter { + pub fn map(&'a self, f: Box In>) -> CoordGetter { + CoordGetter { + name: self.name.clone(), + get: Box::new(move |new: New| (self.get)(f(new))), + } + } +} + +pub fn coord_getter f64 + 'static>(name: &str, get: T) -> CoordGetter { + CoordGetter::new(name, Box::new(get)) +} diff --git a/src/ellipses/xyrr.rs b/src/ellipses/xyrr.rs index b93b835..8542f2b 100644 --- a/src/ellipses/xyrr.rs +++ b/src/ellipses/xyrr.rs @@ -6,7 +6,7 @@ use log::{debug, warn}; use serde::{Deserialize, Serialize}; use tsify::Tsify; -use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, CanProject, CanTransform, Projection}, math::{recip::Recip, deg::Deg, is_zero::IsZero}, sqrt::Sqrt, ellipses::xyrr, zero::Zero}; +use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, CanProject, CanTransform, Projection}, math::{recip::Recip, deg::Deg, is_zero::IsZero}, sqrt::Sqrt, ellipses::xyrr, zero::Zero, coord_getter::{CoordGetter, coord_getter}}; use super::{xyrrt::XYRRT, cdef::{CDEF, self}, bcdef}; @@ -26,14 +26,12 @@ impl XYRR { let r = R2 { x: rx, y: ry }; XYRR::from((c, r)) } - pub fn getters() -> [ Box) -> f64>; 4 ] { - [ - Box::new(move |e: XYRR| e.c.x), - Box::new(move |e: XYRR| e.c.y), - Box::new(move |e: XYRR| e.r.x), - Box::new(move |e: XYRR| e.r.y), - ] - } + pub fn getters() -> [ CoordGetter; 4 ] {[ + coord_getter("cx", |e: Self| e.c.x), + coord_getter("cy", |e: Self| e.c.y), + coord_getter("rx", |e: Self| e.r.x), + coord_getter("ry", |e: Self| e.r.y), + ]} pub fn at_y(&self, y: f64) -> Vec { let uy = (y - self.c.y) / self.r.y; let uy2 = uy * uy; diff --git a/src/ellipses/xyrrt.rs b/src/ellipses/xyrrt.rs index 4e1a5b2..a88585a 100644 --- a/src/ellipses/xyrrt.rs +++ b/src/ellipses/xyrrt.rs @@ -6,7 +6,7 @@ use log::debug; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, Projection, CanTransform, CanProject}, math::{recip::Recip, deg::Deg}}; +use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, Projection, CanTransform, CanProject}, math::{recip::Recip, deg::Deg}, coord_getter::{CoordGetter, coord_getter}}; use super::{xyrr::{XYRR, TransformD, TransformR2, UnitCircleGap, CdefArg}, cdef, bcdef::{BCDEF, self}}; @@ -28,15 +28,13 @@ impl XYRRT { let r = R2 { x: rx, y: ry }; XYRRT::from((c, r, t)) } - pub fn getters() -> [ Box) -> f64>; 5 ] { - [ - Box::new(move |e: XYRRT| e.c.x), - Box::new(move |e: XYRRT| e.c.y), - Box::new(move |e: XYRRT| e.r.x), - Box::new(move |e: XYRRT| e.r.y), - Box::new(move |e: XYRRT| e.t), - ] - } + pub fn getters() -> [ CoordGetter; 5 ] {[ + coord_getter("cx", |e: Self| e.c.x), + coord_getter("cy", |e: Self| e.c.y), + coord_getter("rx", |e: Self| e.r.x), + coord_getter("ry", |e: Self| e.r.y), + coord_getter( "t", |e: Self| e.t ), + ]} pub fn at_y(&self, y: f64) -> Vec { self.bcdef().at_y(y) } diff --git a/src/lib.rs b/src/lib.rs index d802162..e4cd22c 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -7,6 +7,7 @@ extern crate console_error_panic_hook; pub mod circle; pub mod component; pub mod contains; +pub mod coord_getter; pub mod d5; pub mod distance; pub mod dual; diff --git a/src/model.rs b/src/model.rs index 7411ac8..c558e4c 100644 --- a/src/model.rs +++ b/src/model.rs @@ -74,10 +74,9 @@ impl Model { #[cfg(test)] mod tests { use std::{env, path::Path, f64::consts::PI}; - use polars::prelude::*; + use polars::{prelude::*, series::SeriesIter}; - use crate::{dual::Dual, duals::{is_one_hot, D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, ellipses::xyrrt::XYRRT, r2::R2}; - use derive_more::Deref; + use crate::{duals::{is_one_hot, D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::CoordGetter}; use super::*; use test_log::test; @@ -122,98 +121,79 @@ mod tests { /// - error gradient (with respect to each shape-coordinate) #[derive(Clone, Debug, PartialEq)] pub struct ExpectedStep { - vals: Vec, err: f64, - grads: Vec, - } - impl ExpectedStep { - pub fn dual(&self) -> Dual { - Dual::new(self.err, self.grads.clone()) - } + vals: Vec, } - impl From<([f64; N], f64, [f64; N])> for ExpectedStep { - fn from((vals, err, grads): ([f64; N], f64, [f64; N])) -> Self { - ExpectedStep { vals: vals.to_vec(), err, grads: grads.to_vec() } + impl From<([f64; N], f64)> for ExpectedStep { + fn from((vals, err): ([f64; N], f64)) -> Self { + ExpectedStep { err, vals: vals.to_vec() } } } - fn get_actual(step: &Step, getters: &Vec) -> ExpectedStep { + fn get_actual(step: &Step, getters: &Vec>) -> ExpectedStep { let error = step.error.clone(); let err = error.v(); let mut vals: Vec = Vec::new(); - let mut grads: Vec = Vec::new(); - getters.iter().enumerate().for_each(|(coord_idx, getter)| { + getters.iter().for_each(|getter| { let val: f64 = getter(step.clone()); vals.push(val); - let error_d = error.d(); - let err_grad = error_d[coord_idx]; - grads.push(-err_grad); }); - ExpectedStep { vals, err, grads } + ExpectedStep { err, vals } } use AnyValue::Float64; fn load_expecteds(path: &str) -> (DataFrame, Vec) { - let mut df = CsvReader::from_path(path).unwrap().has_header(false).finish().unwrap(); - let num_columns = df.shape().1; - if num_columns % 2 == 0 { - panic!("Expected odd number of columns, got {}", num_columns); - } - let n = (num_columns - 1) / 2; + let mut df = CsvReader::from_path(path).unwrap().has_header(true).finish().unwrap(); df.as_single_chunk_par(); - let mut iters = df.iter().map(|s| s.iter()).collect::>(); - + let mut iters = df.iter().map(|s| s.iter()); + let mut err_iter = iters.next().unwrap(); + // let mut err_iter = iters.pop().unwrap(); + let mut val_iters = iters.collect::>(); let mut expecteds: Vec = Vec::new(); + + let next = |j: usize, iter: &mut SeriesIter| -> f64 { + match iter.next().expect("should have as many iterations as rows") { + Float64(f) => f, + v => panic!("Expected Float64 in col {}, got {:?}", j, v), + } + }; + for _ in 0..df.height() { + let err = next(0, &mut err_iter); let mut vals: Vec = Vec::new(); - let mut grads: Vec = Vec::new(); - let mut err: Option = None; - for (j, iter) in &mut iters.iter_mut().enumerate() { - let v = match iter.next().expect("should have as many iterations as rows") { - Float64(f) => f, - _ => panic!("Expected Float64, got {:?}", iter.next().unwrap()), - }; - if j < n { - vals.push(v); - } else if j == n { - err = Some(v) - } else { - grads.push(v); - } + for (j, mut iter) in val_iters.iter_mut().enumerate() { + let val = next(j + 1, &mut iter); + vals.push(val); } - expecteds.push(ExpectedStep { vals, err: err.unwrap(), grads }); + expecteds.push(ExpectedStep { err, vals }); } (df, expecteds) } - fn write_expecteds(path: &str, expecteds: Vec) -> Result { + fn write_expecteds(path: &str, col_names: Vec, expecteds: Vec) -> Result { let mut cols: Vec> = vec![]; let n = expecteds[0].vals.len(); - let num_columns = 1 + n + n; + let num_columns = 1 + n; for _ in 0..num_columns { cols.push(vec![]); } let path = Path::new(&path); let dir = path.parent().unwrap(); std::fs::create_dir_all(dir)?; - for ExpectedStep { vals, err, grads } in expecteds { + for ExpectedStep { err, vals } in expecteds { + cols[0].push(err); for (j, val) in vals.into_iter().enumerate() { - cols[j].push(val); - } - cols[n].push(err); - for (j, grad) in grads.into_iter().enumerate() { - cols[n+1+j].push(grad); + cols[j + 1].push(val); } } let series = cols.into_iter().enumerate().map(|(j, col)| { - let name = format!("{}", j); - Series::new(&name, col) + Series::new(&col_names[j], col) }).collect(); let mut df = DataFrame::new(series)?; let mut file = std::fs::File::create(path)?; - CsvWriter::new(&mut file).has_header(false).finish(&mut df)?; + CsvWriter::new(&mut file).has_header(true).finish(&mut df)?; Ok(df) } @@ -236,9 +216,6 @@ mod tests { ( "0123", 11. ), ]; - #[derive(Deref)] - pub struct CoordGetter(pub Box f64>); - fn check( inputs: Vec, targets: [(&str, f64); N], @@ -253,15 +230,17 @@ mod tests { let last_step = model.steps[model.steps.len() - 1].clone(); let shapes = last_step.shapes; - let mut coord_getters: Vec<(usize, CoordGetter)> = shapes.iter().enumerate().flat_map( + let mut coord_getters: Vec<(usize, CoordGetter)> = shapes.iter().enumerate().flat_map( |(shape_idx, shape)| { let getters = shape.getters(shape_idx); getters.into_iter().zip(shape.duals()).filter_map(|(getter, dual_vec)| { is_one_hot(&dual_vec).map(|grad_idx| ( grad_idx, - CoordGetter(Box::new(move |step: Step| getter(step.shapes[shape_idx].v()))) - ) - ) + CoordGetter { + name: format!("{}.{}", shape_idx, getter.name), + get: Box::new(move |step: Step| getter(step.shapes[shape_idx].v())), + } + )) }).collect::>() }).collect(); coord_getters.sort_by(|(a, _), (b, _)| a.cmp(b)); @@ -277,7 +256,9 @@ mod tests { match generate_vals { Some(_) => { let expecteds: Vec = steps.iter().map(|step| get_actual(step, &coord_getters)).collect(); - let df = write_expecteds(&expected_path, expecteds).unwrap(); + let mut col_names: Vec<_> = coord_getters.iter().map(|getter| getter.name.clone()).collect(); + col_names.insert(0, "error".to_string()); + let df = write_expecteds(&expected_path, col_names, expecteds).unwrap(); info!("Wrote expecteds to {}", expected_path); info!("{}", df); } diff --git a/src/shape.rs b/src/shape.rs index d8084ed..93cffc5 100644 --- a/src/shape.rs +++ b/src/shape.rs @@ -1,11 +1,11 @@ use std::{ops::{Neg, Add, Sub, Mul, Div}, fmt}; -use derive_more::{From, Deref, Display}; +use derive_more::{From, Display}; use log::debug; use serde::{Deserialize, Serialize}; use tsify::{declare, Tsify}; -use crate::{dual::{D, Dual}, circle::{self, Circle}, ellipses::{xyrr::{self, XYRR, UnitCircleGap}, xyrrt::{self, XYRRT, LevelArg}}, zero::Zero, transform::{Transform, CanProject, CanTransform, HasProjection, Projection}, r2::R2, math::recip::Recip, intersect::{IntersectShapesArg, UnitCircleIntersections}, duals::InitDuals}; +use crate::{dual::{D, Dual}, circle::{self, Circle}, ellipses::{xyrr::{self, XYRR, UnitCircleGap}, xyrrt::{self, XYRRT, LevelArg}}, zero::Zero, transform::{Transform, CanProject, CanTransform, HasProjection, Projection}, r2::R2, math::recip::Recip, intersect::{IntersectShapesArg, UnitCircleIntersections}, duals::InitDuals, coord_getter::CoordGetter}; #[declare] pub type Duals = Vec>; @@ -30,9 +30,6 @@ impl Shapes { } } -#[derive(Deref)] -pub struct CoordGetter(pub Box) -> f64>); - pub fn circle(cx: D, cy: D, r: D) -> Shape { Shape::Circle(Circle { c: R2 { x: cx, y: cy }, r }) } @@ -44,25 +41,39 @@ pub fn xyrrt(cx: D, cy: D, rx: D, ry: D, t: D) -> Shape { } impl Shape { - pub fn getters(&self, shape_idx: usize) -> Vec { + pub fn getters(&self, shape_idx: usize) -> Vec>> { match self { - Shape::Circle(_) => Circle::getters().map(|f| { - CoordGetter(Box::new(move |s: Shape| match s { - Shape::Circle(c) => f(c), - _ => panic!("Expected Circle at idx {}", shape_idx), - })) + Shape::Circle(_) => Circle::getters().map(|CoordGetter { name, get }| { + // TODO: `CoordGetter.map`; "`getter` does not live long enough" + // getter.map(Box::new(move |s: Shape| match s { + // Shape::Circle(c) => c, + // _ => panic!("Expected Circle at idx {}", shape_idx), + // })) + CoordGetter { + name, + get: Box::new(move |s: Shape| match s { + Shape::Circle(c) => get(c), + _ => panic!("Expected Circle at idx {}", shape_idx), + }) + } }).into_iter().collect(), - Shape::XYRR(_) => XYRR::getters().map(|f| { - CoordGetter(Box::new(move |s: Shape| match s { - Shape::XYRR(e) => f(e), - _ => panic!("Expected XYRR at idx {}", shape_idx), - })) + Shape::XYRR(_) => XYRR::getters().map(|CoordGetter { name, get }| { + CoordGetter { + name, + get: Box::new(move |s: Shape| match s { + Shape::XYRR(e) => get(e), + _ => panic!("Expected XYRR at idx {}", shape_idx), + }) + } }).into_iter().collect(), - Shape::XYRRT(_) => XYRRT::getters().map(|f| { - CoordGetter(Box::new(move |s: Shape| match s { - Shape::XYRRT(e) => f(e), - _ => panic!("Expected XYRRT at idx {}", shape_idx), - })) + Shape::XYRRT(_) => XYRRT::getters().map(|CoordGetter { name, get }| { + CoordGetter { + name, + get: Box::new(move |s: Shape| match s { + Shape::XYRRT(e) => get(e), + _ => panic!("Expected XYRRT at idx {}", shape_idx), + }) + } }).into_iter().collect(), } } diff --git a/testdata/centroid_repel/linux.csv b/testdata/centroid_repel/linux.csv index abea338..542d48b 100644 --- a/testdata/centroid_repel/linux.csv +++ b/testdata/centroid_repel/linux.csv @@ -1,101 +1,102 @@ -0.0,0.0,1.0,3.0,0.5,1.0,1.0,1.0,-0.5,1.0,1.0,1.0,0.4101967870436326,-5.77921672274082e-17,-0.16577463705028755,-0.25584089856606285,0.13299162534172454,0.12725951212443587,0.08288731852514374,0.06429069322081359,-0.25856523272820764,-0.12725951212443584,0.08288731852514374,0.06429069322081359,-0.25856523272820764 --3.469848956691937e-17,-0.09953129965718388,0.8463928041536447,3.079848338378613,0.5764067704255744,1.0497656498285919,1.0386002127103904,0.8447571105114594,-0.5764067704255744,1.0497656498285919,1.0386002127103904,0.8447571105114594,0.2472035554744092,2.650466359015922e-17,-0.13608597002273964,-0.27354970513407173,0.08261032857332039,0.12767448771744114,0.0680429850113698,0.04060543350064265,-0.21497979790039629,-0.12767448771744114,0.06804298501136984,0.04060543350064266,-0.21497979790039626 --2.39488663914352e-17,-0.15472433737443408,0.7354479419427595,3.1133530044365454,0.6281883230348686,1.077362168687217,1.0550687525778857,0.7575667256982364,-0.6281883230348686,1.077362168687217,1.0550687525778857,0.7575667256982364,0.18144614110191998,-7.512478879657525e-19,-0.06868737333091886,0.6580870816235179,0.20213439894162213,-0.11277897618599078,0.03434368666545941,-0.16221498225355252,-0.4397800575451172,0.11277897618599078,0.03434368666545944,-0.16221498225355252,-0.4397800575451172 --2.406099078523987e-17,-0.16497598695659643,0.8336680052264335,3.143521737435944,0.6113559637812447,1.0824879934782983,1.0308580268739296,0.6919291736338266,-0.6113559637812447,1.0824879934782983,1.0308580268739296,0.6919291736338266,0.20584934844164232,-7.362718272682572e-19,-0.09126199124065426,-0.7610041937777908,-0.11872122092755998,0.22208052986113191,0.04563099562032712,0.17601082108053343,0.22182598388801328,-0.22208052986113191,0.04563099562032713,0.17601082108053331,0.22182598388801303 --2.4191378876389664e-17,-0.18113778534639474,0.6989000017407856,3.122497120164968,0.6506847215819656,1.0905688926731973,1.0620281927453405,0.7312128532958551,-0.6506847215819656,1.0905688926731973,1.0620281927453405,0.7312128532958551,0.18689063773650225,-7.123073485664393e-19,-0.06660422035380537,0.6916894345856877,0.19805653292429024,-0.10665267099041739,0.0333021101769027,-0.16224956283241232,-0.4482367445542741,0.10665267099041734,0.03330211017690264,-0.16224956283241226,-0.4482367445542739 --2.4297795474264838e-17,-0.19108825763682516,0.8022363446311823,3.152086176719239,0.6347511299603964,1.0955441288184125,1.037788590952507,0.6642476177214818,-0.6347511299603964,1.0955441288184125,1.0377885909525073,0.6642476177214818,0.18081987317823675,-6.44736868213468e-15,-0.08785789529086142,-0.7806690276793604,-0.12271687324847713,0.2154139001681114,0.04392894764542883,0.1699829026481743,0.2419221276631933,-0.215413900168105,0.04392894764543259,0.16998290264816399,0.24192212766318816 --1.005366567636511e-15,-0.20445722127258023,0.683445246710456,3.1334128701197455,0.6675297503501704,1.1022286106362897,1.0636541689598136,0.7010598827627335,-0.6675297503501694,1.1022286106362902,1.0636541689598122,0.7010598827627327,0.17128381715409088,2.624264992092358e-15,-0.06423669115629915,0.7045490104140956,0.19329310116818754,-0.10270602332028966,0.03211834557814932,-0.1618956753424697,-0.4578676039623158,0.10270602332028717,0.03211834557814982,-0.16189567534246316,-0.45786760396230475 --6.515178202518316e-16,-0.21311872183379832,0.7784447172507273,3.159475985671171,0.6536811497666714,1.1065593609168987,1.0418245968321702,0.6393222615170555,-0.6536811497666707,1.1065593609168993,1.0418245968321698,0.6393222615170563,0.16444151262865508,5.47559548048212e-15,-0.08506960363829555,-0.7928993693463596,-0.1250119677588324,0.2093372209393612,0.04253480181915061,0.16487839501895146,0.2583414391522839,-0.20933722093936674,0.04253480181914494,0.16487839501895263,0.25834143915228347 -9.51640542621078e-17,-0.2247192740176144,0.6703206621566626,3.1424286762496534,0.6822275077096029,1.1123596370088071,1.0643083083295652,0.6745511002321228,-0.682227507709603,1.112359637008807,1.064308308329565,0.6745511002321235,0.15671595140569694,1.6602005805282533e-15,-0.062200838762147784,0.7155599532090381,0.18922982385301332,-0.09931191006333476,0.031100419381073566,-0.16167683047181913,-0.4671177667625901,0.09931191006333319,0.031100419381074204,-0.16167683047181994,-0.4671177667625907 -2.971370620498659e-16,-0.23228636599376287,0.7573726712314404,3.165449579347145,0.6701456391571556,1.1161431829968813,1.0446393863191932,0.6177235208114956,-0.670145639157156,1.116143182996881,1.0446393863191927,0.6177235208114962,0.15073752053028996,-1.0249111432852488e-16,-0.08266202840400225,-0.8043822319173353,-0.1268300872960691,0.20408427172123617,0.04133101420200113,0.16067015787717465,0.2732851842649208,-0.20408427172123605,0.04133101420200111,0.16067015787717476,0.27328518426492093 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+0.15613909228629996,0.2217457529956877,1.2380094234731462,2.475766144884489,2.6733549117565825,-0.016026094217471195,-1.53186045673629,-0.8250581073555249,2.3635417581748097,1.6165000856773235,-0.13455392280417539,2.8101147037406036,-0.4129513161175029,2.721912150954659,1.3051297373661892,0.20484878262442377 +0.15205249932732076,0.21785570836462234,1.2374239277878714,2.482765291987487,2.6805020572869753,-0.016847845041446707,-1.5280695575955567,-0.8221505659730992,2.362333143976965,1.6127074377328245,-0.1324983206701071,2.810213849230936,-0.4152733618146537,2.718882346432632,1.2969735724702602,0.20673935868038246 From 0bec864315077f6c506e506954b0f722c2ea8e83 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 12:40:51 -0400 Subject: [PATCH 05/18] add CoordGetters --- src/coord_getter.rs | 25 +++++++++++++++++++++++++ src/model.rs | 24 ++++-------------------- 2 files changed, 29 insertions(+), 20 deletions(-) diff --git a/src/coord_getter.rs b/src/coord_getter.rs index 6b70afc..4314b2d 100644 --- a/src/coord_getter.rs +++ b/src/coord_getter.rs @@ -1,5 +1,7 @@ use std::ops::Deref; +use crate::{shape::InputSpec, step::Step}; + pub struct CoordGetter { pub name: String, pub get: Box f64>, @@ -30,3 +32,26 @@ impl<'a: 'static, In: 'a> CoordGetter { pub fn coord_getter f64 + 'static>(name: &str, get: T) -> CoordGetter { CoordGetter::new(name, Box::new(get)) } + +#[derive(derive_more::Deref)] +pub struct CoordGetters(pub Vec>); + +impl From> for CoordGetters { + fn from(inputs: Vec) -> Self { + Self( + inputs + .iter() + .enumerate() + .flat_map( + |(shape_idx, (shape, mask))| { + let getters = shape.getters(shape_idx); + getters.into_iter().zip(mask).filter(|(_, mask)| **mask).map(|(getter, _)| { + CoordGetter { + name: format!("{}.{}", shape_idx, getter.name), + get: Box::new(move |step: Step| getter(step.shapes[shape_idx].v())), + } + }).collect::>() + }).collect() + ) + } +} \ No newline at end of file diff --git a/src/model.rs b/src/model.rs index c558e4c..4df5772 100644 --- a/src/model.rs +++ b/src/model.rs @@ -76,7 +76,7 @@ mod tests { use std::{env, path::Path, f64::consts::PI}; use polars::{prelude::*, series::SeriesIter}; - use crate::{duals::{is_one_hot, D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::CoordGetter}; + use crate::{duals::{D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::{CoordGetter, CoordGetters}}; use super::*; use test_log::test; @@ -227,26 +227,10 @@ mod tests { let mut model = Model::new(inputs.clone(), targets); let max_steps = env::var("STEPS").map(|s| s.parse::().unwrap()).unwrap_or(max_steps); model.train(max_step_error_ratio, max_steps); - let last_step = model.steps[model.steps.len() - 1].clone(); - let shapes = last_step.shapes; - - let mut coord_getters: Vec<(usize, CoordGetter)> = shapes.iter().enumerate().flat_map( - |(shape_idx, shape)| { - let getters = shape.getters(shape_idx); - getters.into_iter().zip(shape.duals()).filter_map(|(getter, dual_vec)| { - is_one_hot(&dual_vec).map(|grad_idx| ( - grad_idx, - CoordGetter { - name: format!("{}.{}", shape_idx, getter.name), - get: Box::new(move |step: Step| getter(step.shapes[shape_idx].v())), - } - )) - }).collect::>() - }).collect(); - coord_getters.sort_by(|(a, _), (b, _)| a.cmp(b)); + + let coord_getters: CoordGetters = inputs.into(); assert_eq!(model.grad_size(), coord_getters.len()); - let coord_getters: Vec<_> = coord_getters.into_iter().map(|(_, getter)| getter).collect(); - // println!("coord_getters: {:?}", coord_getters.iter().map(|(idx, _)| idx).collect::>()); + // debug!("coord_getters: {:?}", coord_getters.iter().map(|(idx, _)| idx).collect::>()); let steps = model.steps; let generate_vals = env::var("GEN_VALS").map(|s| s.parse::().unwrap()).ok(); From 28e5fe4855371cc0a1f9c3dfb9b1fb608171b965 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 15:53:57 -0400 Subject: [PATCH 06/18] wip: History save/load --- Cargo.toml | 4 +- src/circle.rs | 2 + src/ellipses/xyrr.rs | 2 + src/ellipses/xyrrt.rs | 2 + src/history.rs | 129 ++++++++++++++++++++++++++++++++++++++++-- src/model.rs | 107 ++++++++++++++++++----------------- src/shape.rs | 22 +++++++ 7 files changed, 210 insertions(+), 58 deletions(-) diff --git a/Cargo.toml b/Cargo.toml index 56e2dc6..5b468bb 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -7,6 +7,7 @@ edition = "2021" crate-type = ["cdylib"] [dependencies] +anyhow = "1.0.75" approx = "0.5.1" console_error_panic_hook = "0.1.7" derive_more = "0.99.17" @@ -16,9 +17,11 @@ nalgebra = { version = "0.32.3" } num-dual = { version = "0.7.1" } num-traits = "0.2.16" ordered-float = "4.1.0" +polars = { version = "0.33.2", features = [ "csv" ] } roots = "0.0.8" serde = { version = "1.0.183", features = ["derive"] } serde-wasm-bindgen = "0.6.0" +thiserror = "1.0.49" tsify = "0.4.5" wasm-bindgen = { version = "0.2.87", features = ["serde-serialize"] } wasm-bindgen-console-logger = "0.1.1" @@ -26,5 +29,4 @@ web-sys = { version = "0.3.50", features = ["console"] } [dev-dependencies] env_logger = "0.10.0" -polars = { version = "0.32.1", features = [ "csv" ] } test-log = "0.2.12" diff --git a/src/circle.rs b/src/circle.rs index c57bc4d..2639054 100644 --- a/src/circle.rs +++ b/src/circle.rs @@ -47,6 +47,8 @@ impl Circle { vec![ x0 ] } } + pub fn names(&self) -> [String; 3] { Self::getters().map(|g| g.name).into() } + pub fn vals(&self) -> [f64; 3] { [ self.c.x, self.c.y, self.r ] } } impl Circle { diff --git a/src/ellipses/xyrr.rs b/src/ellipses/xyrr.rs index 8542f2b..47d56a1 100644 --- a/src/ellipses/xyrr.rs +++ b/src/ellipses/xyrr.rs @@ -48,6 +48,8 @@ impl XYRR { vec![ x0 ] } } + pub fn names(&self) -> [String; 4] { Self::getters().map(|g| g.name).into() } + pub fn vals(&self) -> [f64; 4] { [ self.c.x, self.c.y, self.r.x, self.r.y ] } } impl XYRR { diff --git a/src/ellipses/xyrrt.rs b/src/ellipses/xyrrt.rs index a88585a..0052ce3 100644 --- a/src/ellipses/xyrrt.rs +++ b/src/ellipses/xyrrt.rs @@ -38,6 +38,8 @@ impl XYRRT { pub fn at_y(&self, y: f64) -> Vec { self.bcdef().at_y(y) } + pub fn names(&self) -> [String; 5] { Self::getters().map(|g| g.name).into() } + pub fn vals(&self) -> [f64; 5] { [ self.c.x, self.c.y, self.r.x, self.r.y, self.t ] } } impl XYRRT { diff --git a/src/history.rs b/src/history.rs index f467793..6594672 100644 --- a/src/history.rs +++ b/src/history.rs @@ -1,3 +1,6 @@ +use std::{path::Path, collections::BTreeMap}; + +use polars::{prelude::*, series::SeriesIter}; use serde::{Serialize, Deserialize}; use tsify::Tsify; @@ -18,15 +21,129 @@ impl From for Step { } } -#[derive(Debug, Clone, Tsify, Serialize, Deserialize)] -pub struct History { - pub steps: Vec, +impl Step { + pub fn names(&self) -> Vec { + self + .shapes + .iter() + .enumerate() + .flat_map(|(shape_idx, shape)| + shape + .names() + .iter() + .map(|name| format!("{}.{}", shape_idx, name)) + .collect::>() + ) + .collect() + } + pub fn vals(&self) -> Vec { + self.shapes.iter().flat_map(|s| s.vals()).collect() + } } +#[derive(Debug, Clone, derive_more::Deref, Tsify, Serialize, Deserialize)] +pub struct History(pub Vec); + impl From for History { fn from(m: Model) -> Self { - History { - steps: m.steps.into_iter().map(|s| s.into()).collect(), + Self(m.steps.into_iter().map(|s| s.into()).collect()) + } +} + +use AnyValue::Float64; + +#[derive(Debug, thiserror::Error)] +pub enum LoadErr { + #[error("Expected first col \"error\", found {0}")] + UnexpectedFirstCol(String), + #[error("Expected col of form \".\", found {0}")] + InvalidCol(String), + #[error("Expected Float64 in col {0}, got {1}")] + InvalidVal(usize, String), +} +use LoadErr::{UnexpectedFirstCol, InvalidCol, InvalidVal}; + +use anyhow::Result; + +impl History { + pub fn load(path: &str) -> Result { + let mut df = CsvReader::from_path(path)?.has_header(true).finish()?; + df.as_single_chunk_par(); + let mut iters = df.iter().map(|s| (s.name(), s.iter())); + let (err_name, mut err_iter) = iters.next().unwrap(); + if err_name != "error" { + // let e: anyhow::Error = UnexpectedFirstCol(err_name.to_string()).into(); + return Err(UnexpectedFirstCol(err_name.to_string()).into()); } + let (names, mut val_iters): (Vec<_>, Vec<_>) = iters.unzip(); + let num_coords = names.len(); + let mut shape_coord_specs: BTreeMap> = BTreeMap::new(); + for (coord_idx, name) in names.iter().enumerate() { + let parts: Vec<_> = name.split('.').collect(); + if parts.len() != 2 { + return Err(InvalidCol(name.to_string()).into()); + } + let shape_idx = parts[0].parse::()?; + let coord = parts[1]; + shape_coord_specs.entry(shape_idx).or_insert_with(|| vec![]).push((coord_idx, coord)); + } + + let num_rows = df.height(); + let mut steps: Vec = Vec::new(); + let next = |row_idx: usize, col_idx: usize, iter: &mut SeriesIter| -> Result { + match iter.next().expect(&format!("col {} should have at least {} rows, found {}", col_idx, num_rows, row_idx)) { + Float64(f) => Ok(f), + v => Err(InvalidVal(col_idx, format!("{:?}", v))), + } + }; + for row_idx in 0..num_rows { + let error = next(row_idx, 0, &mut err_iter)?; + let mut vals: Vec = Vec::new(); + for (j, mut iter) in val_iters.iter_mut().enumerate() { + let val = next(row_idx, j + 1, &mut iter)?; + vals.push(val); + } + if vals.len() != num_coords { + panic!("Expected {} columns, got {}: {:?}", num_coords, vals.len(), vals); + } + let shapes: Vec> = shape_coord_specs.values().map(|coord_specs| { + let coords: Vec<(&str, f64)> = coord_specs.into_iter().map(|(coord_idx, coord)| { + (*coord, vals[*coord_idx]) + }).collect(); + Shape::from_coords(coords) + }).collect(); + steps.push(Step { error, shapes }); + } + Ok(Self(steps)) + } + + + pub fn save(self, path: &str) -> Result { + let mut cols: Vec> = vec![]; + let first = &self[0]; + let col_names = first.names(); + let n = col_names.len(); + let num_columns = 1 + n; + for _ in 0..num_columns { + cols.push(vec![]); + } + let path = Path::new(&path); + let dir = path.parent().unwrap(); + std::fs::create_dir_all(dir)?; + for step in self.0 { + cols[0].push(step.error); + let vals = step.vals(); + for (j, val) in vals.into_iter().enumerate() { + cols[j + 1].push(val); + } + } + + let series = cols.into_iter().enumerate().map(|(j, col)| { + Series::new(&col_names[j], col) + }).collect(); + let mut df = DataFrame::new(series)?; + let mut file = std::fs::File::create(path)?; + CsvWriter::new(&mut file).has_header(true).finish(&mut df)?; + Ok(df) } -} \ No newline at end of file +} diff --git a/src/model.rs b/src/model.rs index 4df5772..c2908e0 100644 --- a/src/model.rs +++ b/src/model.rs @@ -141,60 +141,65 @@ mod tests { ExpectedStep { err, vals } } + #[derive(Clone, Debug, derive_more::Deref, PartialEq)] + pub struct ExpectedSteps(pub Vec); + use AnyValue::Float64; - fn load_expecteds(path: &str) -> (DataFrame, Vec) { - let mut df = CsvReader::from_path(path).unwrap().has_header(true).finish().unwrap(); - df.as_single_chunk_par(); - let mut iters = df.iter().map(|s| s.iter()); - let mut err_iter = iters.next().unwrap(); - // let mut err_iter = iters.pop().unwrap(); - let mut val_iters = iters.collect::>(); - let mut expecteds: Vec = Vec::new(); - - let next = |j: usize, iter: &mut SeriesIter| -> f64 { - match iter.next().expect("should have as many iterations as rows") { - Float64(f) => f, - v => panic!("Expected Float64 in col {}, got {:?}", j, v), - } - }; - - for _ in 0..df.height() { - let err = next(0, &mut err_iter); - let mut vals: Vec = Vec::new(); - for (j, mut iter) in val_iters.iter_mut().enumerate() { - let val = next(j + 1, &mut iter); - vals.push(val); + impl ExpectedSteps { + pub fn load(path: &str) -> (DataFrame, ExpectedSteps) { + let mut df = CsvReader::from_path(path).unwrap().has_header(true).finish().unwrap(); + df.as_single_chunk_par(); + let mut iters = df.iter().map(|s| s.iter()); + let mut err_iter = iters.next().unwrap(); + let mut val_iters = iters.collect::>(); + let mut expecteds: Vec = Vec::new(); + + let next = |j: usize, iter: &mut SeriesIter| -> f64 { + match iter.next().expect("should have as many iterations as rows") { + Float64(f) => f, + v => panic!("Expected Float64 in col {}, got {:?}", j, v), + } + }; + + for _ in 0..df.height() { + let err = next(0, &mut err_iter); + let mut vals: Vec = Vec::new(); + for (j, mut iter) in val_iters.iter_mut().enumerate() { + let val = next(j + 1, &mut iter); + vals.push(val); + } + expecteds.push(ExpectedStep { err, vals }); } - expecteds.push(ExpectedStep { err, vals }); + (df, Self(expecteds)) } - (df, expecteds) - } - fn write_expecteds(path: &str, col_names: Vec, expecteds: Vec) -> Result { - let mut cols: Vec> = vec![]; - let n = expecteds[0].vals.len(); - let num_columns = 1 + n; - for _ in 0..num_columns { - cols.push(vec![]); - } - let path = Path::new(&path); - let dir = path.parent().unwrap(); - std::fs::create_dir_all(dir)?; - for ExpectedStep { err, vals } in expecteds { - cols[0].push(err); - for (j, val) in vals.into_iter().enumerate() { - cols[j + 1].push(val); + + pub fn write(self, path: &str, col_names: Vec) -> Result { + let mut cols: Vec> = vec![]; + let n = self[0].vals.len(); + let num_columns = 1 + n; + for _ in 0..num_columns { + cols.push(vec![]); + } + let path = Path::new(&path); + let dir = path.parent().unwrap(); + std::fs::create_dir_all(dir)?; + for ExpectedStep { err, vals } in self.0 { + cols[0].push(err); + for (j, val) in vals.into_iter().enumerate() { + cols[j + 1].push(val); + } } - } - let series = cols.into_iter().enumerate().map(|(j, col)| { - Series::new(&col_names[j], col) - }).collect(); - let mut df = DataFrame::new(series)?; - let mut file = std::fs::File::create(path)?; - CsvWriter::new(&mut file).has_header(true).finish(&mut df)?; - Ok(df) + let series = cols.into_iter().enumerate().map(|(j, col)| { + Series::new(&col_names[j], col) + }).collect(); + let mut df = DataFrame::new(series)?; + let mut file = std::fs::File::create(path)?; + CsvWriter::new(&mut file).has_header(true).finish(&mut df)?; + Ok(df) + } } // Values from https://jitc.bmj.com/content/jitc/10/2/e003027.full.pdf?with-ds=yes (pg. 13) @@ -239,19 +244,19 @@ mod tests { let expected_path = format!("testdata/{}/{}.csv", name, os); match generate_vals { Some(_) => { - let expecteds: Vec = steps.iter().map(|step| get_actual(step, &coord_getters)).collect(); + let expecteds = ExpectedSteps(steps.iter().map(|step| get_actual(step, &coord_getters)).collect()); let mut col_names: Vec<_> = coord_getters.iter().map(|getter| getter.name.clone()).collect(); col_names.insert(0, "error".to_string()); - let df = write_expecteds(&expected_path, col_names, expecteds).unwrap(); + let df = expecteds.write(&expected_path, col_names).unwrap(); info!("Wrote expecteds to {}", expected_path); info!("{}", df); } None => { - let (df, expecteds) = load_expecteds(&expected_path); + let (df, expecteds) = ExpectedSteps::load(&expected_path); info!("Read expecteds from {}", expected_path); info!("{}", df); assert_eq!(steps.len(), expecteds.len()); - for (idx, (step, expected)) in steps.iter().zip(expecteds.into_iter()).enumerate() { + for (idx, (step, expected)) in steps.iter().zip(expecteds.0.into_iter()).enumerate() { let actual = get_actual(step, &coord_getters); assert_eq!(actual, expected, "Step {}", idx); } diff --git a/src/shape.rs b/src/shape.rs index 93cffc5..57454c4 100644 --- a/src/shape.rs +++ b/src/shape.rs @@ -80,6 +80,14 @@ impl Shape { } impl Shape { + pub fn from_coords(coords: Vec<(&str, f64)>) -> Shape { + match coords.as_slice() { + [ ("cx", cx), ("cy", cy), ("r", r) ] => circle(*cx, *cy, *r), + [ ("cx", cx), ("cy", cy), ("rx", rx), ("ry", ry) ] => xyrr(*cx, *cy, *rx, *ry), + [ ("cx", cx), ("cy", cy), ("rx", rx), ("ry", ry), ("t", t) ] => xyrrt(*cx, *cy, *rx, *ry, *t), + _ => panic!("Unrecognized coord keys: {:?}", coords), + } + } pub fn dual(&self, duals: &Duals) -> Shape { match self { Shape::Circle(c) => Shape::Circle(c.dual(duals)), @@ -100,6 +108,20 @@ impl Shape { xs } } + pub fn names(&self) -> Vec { + match self { + Shape::Circle(c) => c.names().to_vec(), + Shape::XYRR(e) => e.names().to_vec(), + Shape::XYRRT(e) => e.names().to_vec(), + } + } + pub fn vals(&self) -> Vec { + match self { + Shape::Circle(c) => c.vals().to_vec(), + Shape::XYRR(e) => e.vals().to_vec(), + Shape::XYRRT(e) => e.vals().to_vec(), + } + } } impl Shape { From eb1761e482203491a66e84844b55b702f14f5548 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 16:17:08 -0400 Subject: [PATCH 07/18] use History in tests --- src/history.rs | 15 +- src/model.rs | 109 +--------- .../fizz_buzz_bazz_circle_ellipses/linux.csv | 204 +++++++++--------- .../fizz_buzz_bazz_circle_ellipses/macos.csv | 204 +++++++++--------- testdata/fizz_buzz_bazz_circles/linux.csv | 204 +++++++++--------- testdata/fizz_buzz_bazz_circles/macos.csv | 204 +++++++++--------- testdata/fizz_buzz_circle_ellipse/linux.csv | 114 +++++----- testdata/fizz_buzz_circle_ellipse/macos.csv | 114 +++++----- testdata/fizz_buzz_circles/linux.csv | 146 ++++++------- testdata/fizz_buzz_circles/macos.csv | 148 ++++++------- testdata/fizz_buzz_ellipses_diag/linux.csv | 204 +++++++++--------- testdata/fizz_buzz_ellipses_diag/macos.csv | 204 +++++++++--------- testdata/two_circle_containment/linux.csv | 204 +++++++++--------- testdata/two_circle_containment/macos.csv | 204 +++++++++--------- testdata/two_circles_disjoint/linux.csv | 204 +++++++++--------- testdata/two_circles_disjoint/macos.csv | 204 +++++++++--------- testdata/two_circles_tangent/linux.csv | 204 +++++++++--------- testdata/two_circles_tangent/macos.csv | 204 +++++++++--------- testdata/variant_callers/linux.csv | 204 +++++++++--------- testdata/variant_callers/macos.csv | 204 +++++++++--------- 20 files changed, 1706 insertions(+), 1796 deletions(-) diff --git a/src/history.rs b/src/history.rs index 6594672..5a6bf0b 100644 --- a/src/history.rs +++ b/src/history.rs @@ -50,7 +50,7 @@ impl From for History { } } -use AnyValue::Float64; +static ERROR_COL: &str = "error"; #[derive(Debug, thiserror::Error)] pub enum LoadErr { @@ -64,6 +64,7 @@ pub enum LoadErr { use LoadErr::{UnexpectedFirstCol, InvalidCol, InvalidVal}; use anyhow::Result; +use AnyValue::Float64; impl History { pub fn load(path: &str) -> Result { @@ -71,8 +72,7 @@ impl History { df.as_single_chunk_par(); let mut iters = df.iter().map(|s| (s.name(), s.iter())); let (err_name, mut err_iter) = iters.next().unwrap(); - if err_name != "error" { - // let e: anyhow::Error = UnexpectedFirstCol(err_name.to_string()).into(); + if err_name != ERROR_COL { return Err(UnexpectedFirstCol(err_name.to_string()).into()); } let (names, mut val_iters): (Vec<_>, Vec<_>) = iters.unzip(); @@ -121,9 +121,9 @@ impl History { pub fn save(self, path: &str) -> Result { let mut cols: Vec> = vec![]; let first = &self[0]; - let col_names = first.names(); - let n = col_names.len(); - let num_columns = 1 + n; + let mut col_names = first.names(); + col_names.insert(0, ERROR_COL.to_string()); + let num_columns = col_names.len(); for _ in 0..num_columns { cols.push(vec![]); } @@ -139,7 +139,8 @@ impl History { } let series = cols.into_iter().enumerate().map(|(j, col)| { - Series::new(&col_names[j], col) + let col_name = col_names.get(j).expect(&format!("Expected {} columns, indexing {}; {:?}", num_columns, j, col_names)); + Series::new(col_name, col) }).collect(); let mut df = DataFrame::new(series)?; let mut file = std::fs::File::create(path)?; diff --git a/src/model.rs b/src/model.rs index c2908e0..ada1a8b 100644 --- a/src/model.rs +++ b/src/model.rs @@ -73,10 +73,9 @@ impl Model { #[cfg(test)] mod tests { - use std::{env, path::Path, f64::consts::PI}; - use polars::{prelude::*, series::SeriesIter}; + use std::{env, f64::consts::PI}; - use crate::{duals::{D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::{CoordGetter, CoordGetters}}; + use crate::{duals::{D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::CoordGetters, history::{History, self}}; use super::*; use test_log::test; @@ -115,93 +114,6 @@ mod tests { ( "0123", 36. ), ]; - /// Convenience struct for test cases, containing: - /// - shape-coordinate values - /// - overall error - /// - error gradient (with respect to each shape-coordinate) - #[derive(Clone, Debug, PartialEq)] - pub struct ExpectedStep { - err: f64, - vals: Vec, - } - impl From<([f64; N], f64)> for ExpectedStep { - fn from((vals, err): ([f64; N], f64)) -> Self { - ExpectedStep { err, vals: vals.to_vec() } - } - } - - fn get_actual(step: &Step, getters: &Vec>) -> ExpectedStep { - let error = step.error.clone(); - let err = error.v(); - let mut vals: Vec = Vec::new(); - getters.iter().for_each(|getter| { - let val: f64 = getter(step.clone()); - vals.push(val); - }); - ExpectedStep { err, vals } - } - - #[derive(Clone, Debug, derive_more::Deref, PartialEq)] - pub struct ExpectedSteps(pub Vec); - - use AnyValue::Float64; - - impl ExpectedSteps { - pub fn load(path: &str) -> (DataFrame, ExpectedSteps) { - let mut df = CsvReader::from_path(path).unwrap().has_header(true).finish().unwrap(); - df.as_single_chunk_par(); - let mut iters = df.iter().map(|s| s.iter()); - let mut err_iter = iters.next().unwrap(); - let mut val_iters = iters.collect::>(); - let mut expecteds: Vec = Vec::new(); - - let next = |j: usize, iter: &mut SeriesIter| -> f64 { - match iter.next().expect("should have as many iterations as rows") { - Float64(f) => f, - v => panic!("Expected Float64 in col {}, got {:?}", j, v), - } - }; - - for _ in 0..df.height() { - let err = next(0, &mut err_iter); - let mut vals: Vec = Vec::new(); - for (j, mut iter) in val_iters.iter_mut().enumerate() { - let val = next(j + 1, &mut iter); - vals.push(val); - } - expecteds.push(ExpectedStep { err, vals }); - } - (df, Self(expecteds)) - } - - - pub fn write(self, path: &str, col_names: Vec) -> Result { - let mut cols: Vec> = vec![]; - let n = self[0].vals.len(); - let num_columns = 1 + n; - for _ in 0..num_columns { - cols.push(vec![]); - } - let path = Path::new(&path); - let dir = path.parent().unwrap(); - std::fs::create_dir_all(dir)?; - for ExpectedStep { err, vals } in self.0 { - cols[0].push(err); - for (j, val) in vals.into_iter().enumerate() { - cols[j + 1].push(val); - } - } - - let series = cols.into_iter().enumerate().map(|(j, col)| { - Series::new(&col_names[j], col) - }).collect(); - let mut df = DataFrame::new(series)?; - let mut file = std::fs::File::create(path)?; - CsvWriter::new(&mut file).has_header(true).finish(&mut df)?; - Ok(df) - } - } - // Values from https://jitc.bmj.com/content/jitc/10/2/e003027.full.pdf?with-ds=yes (pg. 13) static MPOWER: [ (&str, f64); 15 ] = [ ( "0---", 42. ), @@ -237,27 +149,24 @@ mod tests { assert_eq!(model.grad_size(), coord_getters.len()); // debug!("coord_getters: {:?}", coord_getters.iter().map(|(idx, _)| idx).collect::>()); - let steps = model.steps; let generate_vals = env::var("GEN_VALS").map(|s| s.parse::().unwrap()).ok(); let os = env::consts::OS; let os = if os == "macos" { "macos" } else { "linux" }; let expected_path = format!("testdata/{}/{}.csv", name, os); match generate_vals { Some(_) => { - let expecteds = ExpectedSteps(steps.iter().map(|step| get_actual(step, &coord_getters)).collect()); - let mut col_names: Vec<_> = coord_getters.iter().map(|getter| getter.name.clone()).collect(); - col_names.insert(0, "error".to_string()); - let df = expecteds.write(&expected_path, col_names).unwrap(); + let history: History = model.into(); + let df = history.save(&expected_path).unwrap(); info!("Wrote expecteds to {}", expected_path); info!("{}", df); } None => { - let (df, expecteds) = ExpectedSteps::load(&expected_path); - info!("Read expecteds from {}", expected_path); - info!("{}", df); + let history = History::load(&expected_path).unwrap(); + let expecteds = history.0; + let steps = model.steps; assert_eq!(steps.len(), expecteds.len()); - for (idx, (step, expected)) in steps.iter().zip(expecteds.0.into_iter()).enumerate() { - let actual = get_actual(step, &coord_getters); + for (idx, (step, expected)) in steps.into_iter().zip(expecteds.into_iter()).enumerate() { + let actual: history::Step = step.into(); assert_eq!(actual, expected, "Step {}", idx); } } diff --git a/testdata/fizz_buzz_bazz_circle_ellipses/linux.csv b/testdata/fizz_buzz_bazz_circle_ellipses/linux.csv index 61d50e8..d319ecf 100644 --- a/testdata/fizz_buzz_bazz_circle_ellipses/linux.csv +++ b/testdata/fizz_buzz_bazz_circle_ellipses/linux.csv @@ -1,102 +1,102 @@ -error,1.cx,1.rx,1.ry,2.cx,2.cy,2.rx,2.ry -0.5451431750551694,1.0,1.0,1.0,0.0,1.0,1.0,1.0 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+0.07737439817339517,0.4472135954999579,1.7888543819998317,1.0,2.0,1.7266461488237848,2.9337713536725714,0.8753088082793292,2.6152018674068,3.041397335737804,1.236490090583338,1.993934669299733,0.37606204563214246,2.3902427963162105,0.36327077694599014,1.4296093913676948,0.7335978178695002 +0.07791668475632238,0.4472135954999579,1.7888543819998317,1.0,2.0,1.7353824458271905,2.9295521128587274,0.8289068754883204,2.606064732812387,3.045430972207432,1.2552265297337484,1.9947156606774417,0.37353596934913247,2.38921129719861,0.3492845111572219,1.4346279421083836,0.7361665609278145 +0.07168394877609487,0.4472135954999579,1.7888543819998317,1.0,2.0,1.7210640259804508,2.932380126512241,0.8658083327234938,2.612679707218397,3.045727054833966,1.2444699720860686,1.989141101925679,0.34819659385826696,2.3927068807169767,0.3545996849483219,1.4409780084082164,0.7582246699129739 +0.07782824991254426,0.4472135954999579,1.7888543819998317,1.0,2.0,1.730435248260122,2.9306702254647936,0.8269593177161579,2.605886301350766,3.0490384646321687,1.240128971958434,1.9914038130856224,0.37313408636904544,2.394875347010506,0.36174626638452106,1.4315784378616092,0.7498084616344995 From 8ff88691ec6b74a320b539b1e22ba68dca872070 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Sun, 8 Oct 2023 20:11:17 -0400 Subject: [PATCH 08/18] fix polars wasm build: `default_features = false` see https://github.com/pola-rs/polars/issues/83#issuecomment-1752198116 --- Cargo.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Cargo.toml b/Cargo.toml index 5b468bb..1978d81 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -17,7 +17,7 @@ nalgebra = { version = "0.32.3" } num-dual = { version = "0.7.1" } num-traits = "0.2.16" ordered-float = "4.1.0" -polars = { version = "0.33.2", features = [ "csv" ] } +polars = { version = "*", default_features = false, features = ["csv"] } roots = "0.0.8" serde = { version = "1.0.183", features = ["derive"] } serde-wasm-bindgen = "0.6.0" From 10df315eedd49ea960a7fe42dd7909acac09d75b Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 09:59:14 -0400 Subject: [PATCH 09/18] Shape::area --- src/circle.rs | 10 ++++++++-- src/ellipses/xyrr.rs | 10 ++++++++-- src/ellipses/xyrrt.rs | 10 ++++++++-- src/shape.rs | 13 +++++++++++++ 4 files changed, 37 insertions(+), 6 deletions(-) diff --git a/src/circle.rs b/src/circle.rs index 2639054..84f7f63 100644 --- a/src/circle.rs +++ b/src/circle.rs @@ -1,4 +1,4 @@ -use std::{fmt::{Display, self}, ops::{Mul, Add, Neg, Div, Sub}}; +use std::{fmt::{Display, self}, ops::{Mul, Add, Neg, Div, Sub}, f64::consts::PI}; use derive_more::From; use log::debug; @@ -6,7 +6,7 @@ use serde::{Deserialize, Serialize}; use tsify::Tsify; use crate::{ dual::{D, Dual}, - r2::R2, rotate::{Rotate as _Rotate, RotateArg}, shape::{Duals, Shape, Shapes}, transform::{Projection, CanTransform}, transform::Transform::{Rotate, Scale, ScaleXY, Translate, self}, ellipses::xyrr::{XYRR, UnitCircleGap}, sqrt::Sqrt, math::{is_normal::IsNormal, recip::Recip}, to::To, intersect::Intersect, coord_getter::{CoordGetter, coord_getter} + r2::R2, rotate::{Rotate as _Rotate, RotateArg}, shape::{Duals, Shape, Shapes, AreaArg}, transform::{Projection, CanTransform}, transform::Transform::{Rotate, Scale, ScaleXY, Translate, self}, ellipses::xyrr::{XYRR, UnitCircleGap}, sqrt::Sqrt, math::{is_normal::IsNormal, recip::Recip}, to::To, intersect::Intersect, coord_getter::{CoordGetter, coord_getter} }; #[derive(Debug, Clone, Copy, From, PartialEq, Tsify, Serialize, Deserialize)] @@ -208,6 +208,12 @@ where R2: TransformR2, } } +impl Circle { + pub fn area(&self) -> D { + self.r.clone() * self.r.clone() * PI + } +} + impl Circle where R2: Neg>, diff --git a/src/ellipses/xyrr.rs b/src/ellipses/xyrr.rs index 47d56a1..c936686 100644 --- a/src/ellipses/xyrr.rs +++ b/src/ellipses/xyrr.rs @@ -1,4 +1,4 @@ -use std::{ops::{Mul, Div, Add, Sub, Neg}, fmt::{Display, Debug}}; +use std::{ops::{Mul, Div, Add, Sub, Neg}, fmt::{Display, Debug}, f64::consts::PI}; use approx::{AbsDiffEq, RelativeEq}; use derive_more::From; @@ -6,7 +6,7 @@ use log::{debug, warn}; use serde::{Deserialize, Serialize}; use tsify::Tsify; -use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, CanProject, CanTransform, Projection}, math::{recip::Recip, deg::Deg, is_zero::IsZero}, sqrt::Sqrt, ellipses::xyrr, zero::Zero, coord_getter::{CoordGetter, coord_getter}}; +use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape, AreaArg}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, CanProject, CanTransform, Projection}, math::{recip::Recip, deg::Deg, is_zero::IsZero}, sqrt::Sqrt, ellipses::xyrr, zero::Zero, coord_getter::{CoordGetter, coord_getter}}; use super::{xyrrt::XYRRT, cdef::{CDEF, self}, bcdef}; @@ -62,6 +62,12 @@ impl XYRR { } } +impl XYRR { + pub fn area(&self) -> D { + self.r.x.clone() * self.r.y.clone() * PI + } +} + pub trait CdefArg : Clone + Add diff --git a/src/ellipses/xyrrt.rs b/src/ellipses/xyrrt.rs index 0052ce3..1466dbe 100644 --- a/src/ellipses/xyrrt.rs +++ b/src/ellipses/xyrrt.rs @@ -1,4 +1,4 @@ -use std::{ops::{Neg, Sub, Mul, Div}, fmt::Display}; +use std::{ops::{Neg, Sub, Mul, Div}, fmt::Display, f64::consts::PI}; use approx::{RelativeEq, AbsDiffEq}; use derive_more::From; @@ -6,7 +6,7 @@ use log::debug; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, Projection, CanTransform, CanProject}, math::{recip::Recip, deg::Deg}, coord_getter::{CoordGetter, coord_getter}}; +use crate::{r2::R2, rotate::{Rotate as _Rotate, RotateArg}, dual::{D, Dual}, shape::{Duals, Shape, AreaArg}, transform::{Transform::{Rotate, Scale, ScaleXY, Translate, self}, Projection, CanTransform, CanProject}, math::{recip::Recip, deg::Deg}, coord_getter::{CoordGetter, coord_getter}}; use super::{xyrr::{XYRR, TransformD, TransformR2, UnitCircleGap, CdefArg}, cdef, bcdef::{BCDEF, self}}; @@ -65,6 +65,12 @@ impl XYRRT { } } +impl XYRRT { + pub fn area(&self) -> D { + self.r.x.clone() * self.r.y.clone() * PI + } +} + pub trait UnitIntersectionsArg: cdef::UnitIntersectionsArg + LevelArg + Deg {} impl UnitIntersectionsArg for D {} diff --git a/src/shape.rs b/src/shape.rs index 57454c4..4023d73 100644 --- a/src/shape.rs +++ b/src/shape.rs @@ -144,6 +144,19 @@ impl Shape { } } +pub trait AreaArg: Clone + Mul + Mul {} +impl + Mul> AreaArg for D {} + +impl Shape { + pub fn area(&self) -> D { + match self { + Shape::Circle(c) => c.area(), + Shape::XYRR(e) => e.area(), + Shape::XYRRT(e) => e.area(), + } + } +} + impl From> for Shape { fn from(s: Shape) -> Self { match s { From ddcc2a202362cc3493f72de045dd67d1d635f8b9 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 10:03:38 -0400 Subject: [PATCH 10/18] denormalize areas onto Region, fix area computation, verify areas --- src/component.rs | 73 ++++++++++++++++++++++++++++++------------------ src/lib.rs | 1 + src/model.rs | 2 +- src/r2.rs | 35 ----------------------- src/region.rs | 71 ++++++++++++++++++++++++++++++++-------------- src/regions.rs | 20 ++++++++----- src/scene.rs | 22 +++++++++------ src/segment.rs | 8 +++--- 8 files changed, 128 insertions(+), 104 deletions(-) diff --git a/src/component.rs b/src/component.rs index 9ca054a..901c44a 100644 --- a/src/component.rs +++ b/src/component.rs @@ -1,10 +1,11 @@ -use std::{collections::{BTreeSet, BTreeMap}, cell::RefCell, rc::Rc, f64::consts::TAU, fmt}; +use std::{collections::{BTreeSet, BTreeMap}, cell::RefCell, rc::Rc, f64::consts::TAU, fmt, ops::Sub}; +use anyhow::{Result, anyhow}; use log::{debug, error}; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{node::{N, Node}, math::deg::Deg, edge::{E, self, EdgeArg, Edge}, contains::{Contains, ShapeContainsPoint}, region::{Region, RegionArg, R}, segment::Segment, set::S, theta_points::{ThetaPoints, ThetaPointsArg}, r2::R2, to::To, zero::Zero, fmt::Fmt}; +use crate::{node::{N, Node}, math::deg::Deg, edge::{E, self, EdgeArg, Edge}, contains::{Contains, ShapeContainsPoint}, region::{Region, RegionArg, R}, segment::Segment, set::S, theta_points::{ThetaPoints, ThetaPointsArg}, r2::R2, to::To, zero::Zero, fmt::Fmt, hull::Hull, shape::AreaArg}; pub type C = Rc>>; @@ -22,10 +23,10 @@ pub struct Component { pub container_set_idxs: BTreeSet, pub regions: Vec>, pub child_component_keys: BTreeSet, - pub hull: Region, + pub hull: Hull, } -impl Component +impl Component where R2: To>, { pub fn new( @@ -84,12 +85,11 @@ where R2: To>, } let mut region_container_set_idxs = container_set_idxs.clone(); // TODO: shadow? region_container_set_idxs.insert(set_idx); - Region { + Region::new( key, - segments: vec![ Segment { edge: e.clone(), fwd: true } ], - container_set_idxs: region_container_set_idxs.clone(), - child_components: vec![], // populated by `Scene`, once all `Component`s have been created - } + vec![ Segment { edge: e.clone(), fwd: true } ], + region_container_set_idxs.clone() + ) }; node.add_edge(e.clone()); let component = Component { @@ -101,12 +101,7 @@ where R2: To>, container_set_idxs: container_set_idxs.clone(), child_component_keys: BTreeSet::new(), // populated by `Scene`, once all `Component`s have been created regions: vec![ region.clone() ], - hull: Region { - key: String::new(), - segments: vec![ Segment { edge: e.clone(), fwd: true } ], - container_set_idxs, - child_components: vec![], // not populated/relevant, a `hull` is a special Region (TODO: give it its own type?) - }, + hull: Hull(vec![ Segment { edge: e.clone(), fwd: true } ]), }; debug!("singleton component: {}", set_idx); debug!(" node: {}", node); @@ -159,12 +154,7 @@ where R2: To>, let successor = successors[0].clone(); hull_segments.push(successor); } - let hull = Region { - key: String::new(), - segments: hull_segments, - container_set_idxs: container_set_idxs.iter().cloned().collect(), - child_components: vec![], // not populated/relevant, a `hull` is a special Region (TODO: give it its own type?)// populated by `Scene`, once all `Component`s have been created - }; + let hull = Hull(hull_segments); let total_expected_visits = edges.iter().map(|e| e.borrow().expected_visits()).sum::(); let regions = Component::regions(&edges, num_sets, total_expected_visits, &container_set_idxs); @@ -363,12 +353,11 @@ where R2: To>, key += "-"; } } - let region = Region { + let region = Region::new( key, - segments: segments.clone(), - container_set_idxs: container_idxs.iter().cloned().collect(), - child_components: vec![], - }; + segments.clone(), + container_idxs.iter().cloned().collect(), + ); regions.push(region); } } else { @@ -426,7 +415,7 @@ impl Component where R2: To>, { pub fn area(&self) -> D { - self.regions.iter().map(|r| r.total_area()).sum::() + self.regions.iter().map(|r| r.total_area.clone()).sum::() } } @@ -434,4 +423,34 @@ impl Component { pub fn contains(&self, key: &Key) -> bool { self.sets.iter().any(|set| set.borrow().child_component_keys.contains(key)) } +} + +impl> Component +// where f64: From<&'a D> `From<&f64> for f64` doesn't exist…? +{ + pub fn verify_areas(&self, ε: f64) -> Result<()> { + let mut shape_region_areas: BTreeMap = BTreeMap::new(); + for region in &self.regions { + let region_area: f64 = region.total_area.clone().into(); + for set_idx in ®ion.container_set_idxs { + let shape_region_area = shape_region_areas.entry(*set_idx).or_insert(0.); + *shape_region_area += region_area; + } + } + for set_idx in &self.set_idxs { + let shape_region_area = *shape_region_areas.get(set_idx).unwrap(); + let shape = &self.sets[*set_idx].borrow().shape; + let shape_area: f64 = shape.area().into(); + let diff = (shape_region_area / shape_area - 1.).abs(); + if diff > ε { + error!( + // return Err(anyhow!( + "shape {} area {} != sum of regions area {}, half-diff {}", + set_idx, shape_area, shape_region_area, (shape_region_area - shape_area) / 2. + // )); + ) + } + } + Ok(()) + } } \ No newline at end of file diff --git a/src/lib.rs b/src/lib.rs index e4cd22c..b638c56 100644 --- a/src/lib.rs +++ b/src/lib.rs @@ -20,6 +20,7 @@ pub mod float_wrap; pub mod fmt; pub mod gap; pub mod history; +pub mod hull; pub mod intersect; pub mod intersection; pub mod node; diff --git a/src/model.rs b/src/model.rs index ada1a8b..2c8ea48 100644 --- a/src/model.rs +++ b/src/model.rs @@ -348,6 +348,6 @@ mod tests { ( xyrrt( 0.15416800838315917, 2.5522066048894576, 2.052620045044561 , 0.7844775004499663, 0.47084646751887366), vec![ D; 5 ] ), ( xyrrt( 0.9594177207338993 , 1.5988440867036033, 2.417618150694609 , 1.4130685330891937, 0.8644165147959761 ), vec![ D; 5 ] ), ]; - check(inputs, MPOWER, "mpower_spike", 0.1, 2); + check(inputs, MPOWER, "mpower_spike", 0.1, 1); } } diff --git a/src/r2.rs b/src/r2.rs index c4bcf11..1866f47 100644 --- a/src/r2.rs +++ b/src/r2.rs @@ -142,17 +142,6 @@ impl> Add for R2 { } } -// Want to be able to add R2 + R2, but this gives an infinite recursion "overflow evaluating the requirement" error at compile time. -// impl, R> Add> for R2 { -// type Output = R2; -// fn add(self, rhs: R2) -> Self::Output { -// R2 { -// x: self.x + rhs.x, -// y: self.y + rhs.y, -// } -// } -// } - impl<'a, D: 'a + Clone + Add> Add<&'a R2> for R2 { type Output = Self; fn add(self, rhs: &'a R2) -> Self::Output { @@ -263,36 +252,12 @@ impl + Clone> Div for R2 { } } -// impl + Clone> Div for R2 { -// type Output = Self; -// fn div(self, rhs: f64) -> Self::Output { -// R2 { -// x: self.x / rhs.clone(), -// y: self.y / rhs.clone(), -// } -// } -// } - -impl Div> for f64 -where - f64: Div, -{ - type Output = R2; - fn div(self, rhs: R2) -> Self::Output { - R2 { - x: self / rhs.x, - y: self / rhs.y, - } - } -} - impl Sum for R2 where R2: Add> { fn sum>(mut iter: I) -> Self { let first = iter.next().unwrap(); iter.fold(first, |a, b| a + b) - // iter.fold(R2 { x: D::zero(), y: D::zero() }, |a, b| a + b) } } diff --git a/src/region.rs b/src/region.rs index b90034a..fa7febe 100644 --- a/src/region.rs +++ b/src/region.rs @@ -4,7 +4,7 @@ use itertools::Itertools; use log::debug; use ordered_float::OrderedFloat; -use crate::{segment::Segment, edge::{Edge, EdgeArg, E}, math::abs::{Abs, AbsArg}, r2::R2, to::To, dual::Dual, component::C, shape::Shape, theta_points::ThetaPoints}; +use crate::{segment::Segment, edge::{Edge, EdgeArg, E}, math::{abs::{Abs, AbsArg}, deg::Deg}, r2::R2, to::To, dual::Dual, component::C, shape::Shape, theta_points::ThetaPoints}; #[derive(Debug, Clone)] pub struct Region { @@ -12,6 +12,10 @@ pub struct Region { pub segments: Vec>, pub container_set_idxs: BTreeSet, pub child_components: Vec>, + pub polygon_area: D, + pub secant_area: D, + /// Area of this region (including any child components) + pub total_area: D, } pub type R = Rc>>; @@ -29,36 +33,62 @@ impl RegionArg for Dual {} impl Region where R2: To>, { + pub fn new(key: String, segments: Vec>, container_set_idxs: BTreeSet) -> Self { + let polygon_area = Self::polygon_area(&segments); + let secant_area = Self::secant_area(&key, &segments, &container_set_idxs); + let total_area = (polygon_area.clone() + secant_area.clone()).abs(); + // debug!( + // "Region {} polygon_area: {}, secant_area: {}, total: {}", + // key, + // Into::::into(polygon_area.clone()), + // Into::::into(secant_area.clone()), + // Into::::into(total_area.clone()) + // ); + Region { + key, + segments, + container_set_idxs, + child_components: vec![], // populated by `Scene`, once all `Component`s have been created + polygon_area, + secant_area, + total_area, + } + } pub fn len(&self) -> usize { self.segments.len() } - pub fn polygon_area(&self) -> D { - (self.segments.iter().map(|s| { + pub fn polygon_area(segments: &Vec>) -> D { + segments.iter().map(|s| { let cur = s.start().borrow().p.clone(); let nxt = s.end().borrow().p.clone(); cur.x * nxt.y - cur.y * nxt.x - }).sum::() / 2.).abs() + }).sum::() / 2. } - pub fn secant_area(&self) -> D { - let is_singleton = self.segments.len() == 1; - self.segments.iter().map(|s| { - let area = s.secant_area(); - let set_idx = s.edge.borrow().set_idx(); - // debug!(" secant_area: {}, set_idx: {}, container_set_idxs {:?}", area, set_idx, self.container_set_idxs); - if is_singleton || self.container_set_idxs.contains(&set_idx) { area } else { -area } + pub fn secant_area(key: &str, segments: &Vec>, container_set_idxs: &BTreeSet) -> D { + let is_singleton = segments.len() == 1; + segments.iter().map(|s| { + s.secant_area() + // let area = s.secant_area(); + // let edge = s.edge.borrow(); + // let set_idx = edge.set_idx(); + // if key == "---3" { + // debug!( + // " Region {} secant_area, set {} ({} → {} {}): {} (container_set_idxs {:?})", + // key, + // set_idx, + // Into::::into(edge.theta0.clone()).deg_str(), + // Into::::into(edge.theta1.clone()).deg_str(), + // if s.fwd { "fwd" } else { "rev" }, + // Into::::into(area.clone()), + // container_set_idxs, + // ); + // } + // if is_singleton || container_set_idxs.contains(&set_idx) { area } else { -area } }).sum::() } - /// Area of this region (including any child components) - pub fn total_area(&self) -> D { - let polygon_area = self.polygon_area(); - let secant_area = self.secant_area(); - let area = polygon_area.clone() + secant_area.clone(); - // debug!("Region {}: polygon_area: {}, secant_area: {}, total: {}", self.key, polygon_area, secant_area, area); - area - } /// Area of this region (excluding any child components) pub fn area(&self) -> D { - let mut area = self.total_area(); + let mut area = self.total_area.clone(); for child_component in &self.child_components { // TODO: implement SubAssign area = area - child_component.borrow().area(); @@ -79,7 +109,6 @@ where R2: To>, } } - impl Region { pub fn segments_for_set(&self, set_idx: usize) -> Vec<&Segment> { self.segments.iter().filter(|s| { diff --git a/src/regions.rs b/src/regions.rs index 5d3aa48..82117ae 100644 --- a/src/regions.rs +++ b/src/regions.rs @@ -3,7 +3,7 @@ use std::collections::BTreeSet; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{dual::Dual, r2::R2, component, set::Set, region}; +use crate::{dual::Dual, r2::R2, component, set::Set, region, segment}; #[derive(Clone, Debug, Tsify, Serialize, Deserialize)] pub struct Point { @@ -28,6 +28,15 @@ pub struct Segment { pub fwd: bool, } +impl From<&segment::Segment> for Segment { + fn from(s: &segment::Segment) -> Self { + Segment { + edge_idx: s.edge.borrow().idx, + fwd: s.fwd, + } + } +} + #[derive(Clone, Debug, Tsify, Serialize, Deserialize)] pub struct Region { pub key: String, @@ -41,10 +50,7 @@ impl From<®ion::Region> for Region { fn from(region: ®ion::Region) -> Self { Region { key: region.key.clone(), - segments: region.segments.iter().map(|s| Segment { - edge_idx: s.edge.borrow().idx, - fwd: s.fwd, - }).collect(), + segments: region.segments.iter().map(|s| s.into()).collect(), area: region.area().v(), container_set_idxs: region.container_set_idxs.clone().into_iter().collect(), child_component_keys: region.child_components.iter().map(|c| c.borrow().key.0.clone()).collect(), @@ -60,7 +66,7 @@ pub struct Component { pub edges: Vec, pub regions: Vec, pub container_idxs: Vec, - pub hull: Region, + pub hull: Vec, } impl Component { @@ -83,7 +89,7 @@ impl Component { let region: Region = r.into(); region }).collect(); - let hull: Region = (&component.hull).into(); + let hull: Vec = component.hull.0.iter().map(|s| s.into()).collect(); Component { key: component.key.0.clone(), sets, diff --git a/src/scene.rs b/src/scene.rs index 29ba2e8..b0dcb16 100644 --- a/src/scene.rs +++ b/src/scene.rs @@ -4,7 +4,7 @@ use std::{cell::RefCell, rc::Rc, collections::{BTreeSet, BTreeMap}, ops::{Neg, A use log::{debug, info, error}; use ordered_float::OrderedFloat; -use crate::{node::{N, Node}, contains::{Contains, ShapeContainsPoint}, distance::Distance, region::RegionArg, set::S, shape::Shape, theta_points::ThetaPoints, intersect::{Intersect, IntersectShapesArg}, r2::R2, transform::{CanTransform, HasProjection, CanProject}, dual::Dual, to::To, math::deg::Deg, fmt::Fmt, component::{Component, self}, set::Set}; +use crate::{node::{N, Node}, contains::{Contains, ShapeContainsPoint}, distance::Distance, region::RegionArg, set::S, shape::{Shape, AreaArg}, theta_points::ThetaPoints, intersect::{Intersect, IntersectShapesArg}, r2::R2, transform::{CanTransform, HasProjection, CanProject}, dual::Dual, to::To, math::deg::Deg, fmt::Fmt, component::{Component, self}, set::Set}; /// Collection of [`Shape`]s (wrapped in [`Set`]s), and segmented into connected [`Component`]s. #[derive(Clone, Debug)] @@ -15,6 +15,7 @@ pub struct Scene { pub trait SceneD : IntersectShapesArg ++ AreaArg + Add + Mul + Div @@ -219,10 +220,17 @@ where // debug!("Set {}, child components: {}", set.borrow().idx, set.borrow().child_component_keys.iter().map(|k| k.to_string()).collect::>().join(", ")); } - // let mut component_depths: BTreeMap = BTreeMap::new(); for component_ptr in component_ptrs.iter() { - let key = &component_ptr.borrow().key; - let p: R2 = component_ptr.borrow().sets[0].borrow().shape.c().into(); + let component = component_ptr.borrow(); + match component.verify_areas(0.001) { + Ok(_) => {} + Err(err) => { + error!("Component {} failed area verification: {}", component.key, err); + // panic!("Component {} failed area verification: {}", component.key, err); + } + } + let key = &component.key; + let p: R2 = component.sets[0].borrow().shape.c().into(); // debug!("{}: {} at {}", component_idx, key, p); for container_component in &mut components { // dbg!(children.clone()); @@ -333,10 +341,6 @@ where self.sets.len() } - // pub fn num_vars(&self) -> usize { - // self.shapes[0].borrow().n() - // } - pub fn zero(&self) -> D { self.sets[0].borrow().zero() } @@ -423,7 +427,7 @@ pub mod tests { let cidx = edge.borrow().set.borrow().idx; format!("{}({})", cidx, start.borrow().theta(cidx).v().deg_str()) }).collect::>().join(" "); - format!("{} {}: {:.3} + {:.3} = {}", region.key, path_str, region.polygon_area().v(), region.secant_area().v(), region.area().s(3)) + format!("{} {}: {:.3} + {:.3} = {}", region.key, path_str, region.polygon_area.v(), region.secant_area.v(), region.area().s(3)) }).collect::>(); actual.iter().zip(expected.iter()).enumerate().for_each(|(idx, (a, b))| assert_eq!(&a, b, "idx: {}, {} != {}", idx, a, b)); } diff --git a/src/segment.rs b/src/segment.rs index 652ff60..d76bea9 100644 --- a/src/segment.rs +++ b/src/segment.rs @@ -1,4 +1,4 @@ -use std::fmt::{Display, Formatter, self}; +use std::{fmt::{Display, Formatter, self}, ops::Neg}; use crate::{edge::{E, EdgeArg, Edge}, node::N, r2::R2, to::To}; @@ -8,13 +8,13 @@ pub struct Segment { pub fwd: bool, } -impl Segment +impl> Segment where - // Intersection: Display, R2: To>, { pub fn secant_area(&self) -> D { - self.edge.borrow().secant_area() + let secant_area = self.edge.borrow().secant_area(); + if self.fwd { secant_area } else { -secant_area } } pub fn start(&self) -> N { let e = self.edge.borrow(); From c75f2a0d89695c77ebdfd48e53c23e604d7830fe Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 10:04:43 -0400 Subject: [PATCH 11/18] update mpower test --- src/model.rs | 2 +- testdata/mpower_spike/macos.csv | 104 +++++++++++++++++++++++++++++++- 2 files changed, 102 insertions(+), 4 deletions(-) diff --git a/src/model.rs b/src/model.rs index 2c8ea48..1ca706f 100644 --- a/src/model.rs +++ b/src/model.rs @@ -348,6 +348,6 @@ mod tests { ( xyrrt( 0.15416800838315917, 2.5522066048894576, 2.052620045044561 , 0.7844775004499663, 0.47084646751887366), vec![ D; 5 ] ), ( xyrrt( 0.9594177207338993 , 1.5988440867036033, 2.417618150694609 , 1.4130685330891937, 0.8644165147959761 ), vec![ D; 5 ] ), ]; - check(inputs, MPOWER, "mpower_spike", 0.1, 1); + check(inputs, MPOWER, "mpower_spike", 0.1, 100); } } diff --git a/testdata/mpower_spike/macos.csv b/testdata/mpower_spike/macos.csv index 9ae9b56..b4a38d3 100644 --- a/testdata/mpower_spike/macos.csv +++ b/testdata/mpower_spike/macos.csv @@ -1,4 +1,102 @@ error,0.cx,0.cy,0.rx,0.ry,0.t,1.cx,1.cy,1.rx,1.ry,1.t,2.cx,2.cy,2.rx,2.ry,2.t,3.cx,3.cy,3.rx,3.ry,3.t -0.05231979896587202,-0.7795647537412774,1.3864596428989213,0.9779421231703596,2.116221516077534,0.5929345063728056,-0.334020975375785,2.2012585482178664,0.8217004750509326,1.8949774045049235,0.8930950419653292,0.15416800838315917,2.5522066048894576,2.052620045044561,0.7844775004499663,0.47084646751887366,0.9594177207338993,1.5988440867036033,2.417618150694609,1.4130685330891937,0.8644165147959761 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+0.05218749309613126,-0.7881161634062381,1.4345161536964603,0.9430805177460159,2.0614803437024243,0.6008150331217796,-0.35106051578165093,2.2107799558320322,0.7873255874836331,1.8342169509457127,0.883390663308245,0.1022941420212123,2.545010982084482,1.9999542267052772,0.7553345540294762,0.49409678488527653,1.0368825371666741,1.5484617910968772,2.499627135623259,1.5117280328017946,0.8747275387197417 From fe85ec29ac126f7845124142b0914d6bc9c683d1 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 10:09:00 -0400 Subject: [PATCH 12/18] fix Component::verify_areas --- src/component.rs | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/component.rs b/src/component.rs index 901c44a..97eec32 100644 --- a/src/component.rs +++ b/src/component.rs @@ -437,16 +437,16 @@ impl> Component *shape_region_area += region_area; } } - for set_idx in &self.set_idxs { - let shape_region_area = *shape_region_areas.get(set_idx).unwrap(); - let shape = &self.sets[*set_idx].borrow().shape; - let shape_area: f64 = shape.area().into(); + for set in &self.sets { + let set = set.borrow(); + let shape_region_area = *shape_region_areas.get(&set.idx).unwrap(); + let shape_area: f64 = set.shape.area().into(); let diff = (shape_region_area / shape_area - 1.).abs(); if diff > ε { error!( // return Err(anyhow!( "shape {} area {} != sum of regions area {}, half-diff {}", - set_idx, shape_area, shape_region_area, (shape_region_area - shape_area) / 2. + set.idx, shape_area, shape_region_area, (shape_region_area - shape_area) / 2. // )); ) } From af5ff5a010216c3910e841a048273ce8340338ba Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 10:21:17 -0400 Subject: [PATCH 13/18] update testdata / expecteds --- src/scene.rs | 6 +- testdata/centroid_repel/macos.csv | 58 +++---- testdata/variant_callers/macos.csv | 202 ++++++++++++------------ testdata/variant_callers_diag/macos.csv | 202 ++++++++++++------------ testdata/webapp_bug1/macos.csv | 202 ++++++++++++------------ 5 files changed, 335 insertions(+), 335 deletions(-) diff --git a/src/scene.rs b/src/scene.rs index b0dcb16..846fde6 100644 --- a/src/scene.rs +++ b/src/scene.rs @@ -412,11 +412,11 @@ pub mod tests { assert_eq!(component.regions.len(), 7); let expected = [ "01- 0( -60) 2( -30) 1( 180): 0.500 + 0.285 = 0.785, vec![ 1.366, -0.366, 1.571, -0.866, -0.500, 1.047, -0.500, 0.866, -1.047]", - "-1- 0( -60) 2( -30) 1( 90): 0.000 + 1.785 = 1.785, vec![-1.366, 0.366, -1.571, 1.866, -0.500, 3.665, -0.500, 0.134, -0.524]", - "-12 0( 30) 1( 120) 2( 0): 0.116 + 0.012 = 0.128, vec![-0.366, -0.366, -0.524, -0.134, 0.500, 0.524, 0.500, -0.134, 0.524]", + "-1- 0( -60) 2( -30) 1( 90): -0.000 + -1.785 = 1.785, vec![-1.366, 0.366, -1.571, 1.866, -0.500, 3.665, -0.500, 0.134, -0.524]", + "-12 0( 30) 1( 120) 2( 0): -0.116 + -0.012 = 0.128, vec![-0.366, -0.366, -0.524, -0.134, 0.500, 0.524, 0.500, -0.134, 0.524]", "012 0( 30) 1( 120) 2( -90): 0.250 + 0.193 = 0.443, vec![ 0.366, 0.366, 0.524, -0.866, 0.500, 1.047, 0.500, -0.866, 1.047]", "0-2 0( 60) 2(-150) 1( 180): 0.500 + 0.285 = 0.785, vec![-0.366, 1.366, 1.571, 0.866, -0.500, -1.047, -0.500, -0.866, 1.047]", - "--2 0( 60) 2(-150) 1( 90): 0.000 + 1.785 = 1.785, vec![ 0.366, -1.366, -1.571, 0.134, -0.500, -0.524, -0.500, 1.866, 3.665]", + "--2 0( 60) 2(-150) 1( 90): -0.000 + -1.785 = 1.785, vec![ 0.366, -1.366, -1.571, 0.134, -0.500, -0.524, -0.500, 1.866, 3.665]", "0-- 0( 150) 1(-120) 2( -90): 0.250 + 0.878 = 1.128, vec![-1.366, -1.366, 2.618, 0.866, 0.500, -1.047, 0.500, 0.866, -1.047]", ]; let actual = component.regions.iter().map(|region| { diff --git a/testdata/centroid_repel/macos.csv b/testdata/centroid_repel/macos.csv index d94abf7..a771335 100644 --- a/testdata/centroid_repel/macos.csv +++ b/testdata/centroid_repel/macos.csv @@ -71,32 +71,32 @@ error,0.cx,0.cy,0.rx,0.ry,1.cx,1.cy,1.rx,1.ry,2.cx,2.cy,2.rx,2.ry 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+0.2338056695041543,0.21449106663784429,0.8559890905824427,2.027660019997886,2.5849602228151016,0.24950048318234325,-1.6465062272755173,-0.3575133341568866,1.6099090484024092,2.379929191337194,0.3786745815382296,2.932015160637675,-0.4984757564255549,4.867354943690023,0.7992039956058092,0.3030847628712221 +0.22408820391884035,0.21795723375151016,0.8638671475781489,2.035184649009615,2.591084074065021,0.2492239408058688,-1.6459544957165189,-0.36222455204372295,1.599966317359473,2.375424612817956,0.38463890569841136,2.9279972619650105,-0.5016425955344247,4.869005354163088,0.78612360118604,0.3020079538555647 From ad77c51b783fcd77c81ed32e0cf07f88ec0fdae5 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 10:21:24 -0400 Subject: [PATCH 14/18] add hull.rs --- src/hull.rs | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 src/hull.rs diff --git a/src/hull.rs b/src/hull.rs new file mode 100644 index 0000000..024448b --- /dev/null +++ b/src/hull.rs @@ -0,0 +1,14 @@ +use crate::{segment::Segment, region::{Region, RegionArg}, r2::R2, to::To}; + +#[derive(Clone, Debug, derive_more::Deref)] +pub struct Hull(pub Vec>); + +impl Hull +where R2: To>, +{ + pub fn area(&self) -> D { + let polygon_area = Region::polygon_area(&self); + let secant_area = Region::secant_area("", &self, &self.0.iter().map(|s| s.edge.borrow().set_idx()).collect()); + polygon_area + secant_area + } +} \ No newline at end of file From 4dca40d69b927b7081952b85b59d97362a1e29e2 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 14:27:10 -0400 Subject: [PATCH 15/18] fix apvd.d.ts `Step` collision --- src/history.rs | 20 +++++++++++--------- src/model.rs | 4 ++-- 2 files changed, 13 insertions(+), 11 deletions(-) diff --git a/src/history.rs b/src/history.rs index 5a6bf0b..1205659 100644 --- a/src/history.rs +++ b/src/history.rs @@ -3,25 +3,27 @@ use std::{path::Path, collections::BTreeMap}; use polars::{prelude::*, series::SeriesIter}; use serde::{Serialize, Deserialize}; use tsify::Tsify; +use wasm_bindgen::prelude::wasm_bindgen; -use crate::{shape::Shape, step, model::Model}; +use crate::{shape::Shape, step::Step, model::Model}; +/// Namespacing apparently necessary to avoid colliding with step::Step in apvd.d.ts: https://github.com/madonoharu/tsify/issues/36 #[derive(Debug, Clone, PartialEq, Tsify, Serialize, Deserialize)] -pub struct Step { +pub struct HistoryStep { pub error: f64, pub shapes: Vec>, } -impl From for Step { - fn from(s: step::Step) -> Self { - Step { +impl From for HistoryStep { + fn from(s: Step) -> Self { + HistoryStep { error: s.error.v(), shapes: s.shapes.into_iter().map(|s| s.into()).collect(), } } } -impl Step { +impl HistoryStep { pub fn names(&self) -> Vec { self .shapes @@ -42,7 +44,7 @@ impl Step { } #[derive(Debug, Clone, derive_more::Deref, Tsify, Serialize, Deserialize)] -pub struct History(pub Vec); +pub struct History(pub Vec); impl From for History { fn from(m: Model) -> Self { @@ -89,7 +91,7 @@ impl History { } let num_rows = df.height(); - let mut steps: Vec = Vec::new(); + let mut steps: Vec = Vec::new(); let next = |row_idx: usize, col_idx: usize, iter: &mut SeriesIter| -> Result { match iter.next().expect(&format!("col {} should have at least {} rows, found {}", col_idx, num_rows, row_idx)) { Float64(f) => Ok(f), @@ -112,7 +114,7 @@ impl History { }).collect(); Shape::from_coords(coords) }).collect(); - steps.push(Step { error, shapes }); + steps.push(HistoryStep { error, shapes }); } Ok(Self(steps)) } diff --git a/src/model.rs b/src/model.rs index 1ca706f..eafe505 100644 --- a/src/model.rs +++ b/src/model.rs @@ -75,7 +75,7 @@ impl Model { mod tests { use std::{env, f64::consts::PI}; - use crate::{duals::{D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::CoordGetters, history::{History, self}}; + use crate::{duals::{D, Z}, scene::tests::ellipses4, shape::{circle, InputSpec, xyrr, xyrrt}, to::To, transform::{CanTransform, Transform::Rotate}, coord_getter::CoordGetters, history::{History, HistoryStep}}; use super::*; use test_log::test; @@ -166,7 +166,7 @@ mod tests { let steps = model.steps; assert_eq!(steps.len(), expecteds.len()); for (idx, (step, expected)) in steps.into_iter().zip(expecteds.into_iter()).enumerate() { - let actual: history::Step = step.into(); + let actual: HistoryStep = step.into(); assert_eq!(actual, expected, "Step {}", idx); } } From 7f331f83196a539162c2f3c85e6b26066b0b85e3 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 14:48:33 -0400 Subject: [PATCH 16/18] testdata fix, rm unused imports --- src/component.rs | 6 +++--- src/dual.rs | 2 +- src/scene.rs | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/src/component.rs b/src/component.rs index 97eec32..83efa9b 100644 --- a/src/component.rs +++ b/src/component.rs @@ -1,11 +1,11 @@ -use std::{collections::{BTreeSet, BTreeMap}, cell::RefCell, rc::Rc, f64::consts::TAU, fmt, ops::Sub}; -use anyhow::{Result, anyhow}; +use std::{collections::{BTreeSet, BTreeMap}, cell::RefCell, rc::Rc, f64::consts::TAU, fmt}; +use anyhow::Result; use log::{debug, error}; use serde::{Serialize, Deserialize}; use tsify::Tsify; -use crate::{node::{N, Node}, math::deg::Deg, edge::{E, self, EdgeArg, Edge}, contains::{Contains, ShapeContainsPoint}, region::{Region, RegionArg, R}, segment::Segment, set::S, theta_points::{ThetaPoints, ThetaPointsArg}, r2::R2, to::To, zero::Zero, fmt::Fmt, hull::Hull, shape::AreaArg}; +use crate::{node::{N, Node}, math::deg::Deg, edge::{E, self, EdgeArg, Edge}, contains::{Contains, ShapeContainsPoint}, region::{Region, RegionArg}, segment::Segment, set::S, theta_points::{ThetaPoints, ThetaPointsArg}, r2::R2, to::To, zero::Zero, fmt::Fmt, hull::Hull, shape::AreaArg}; pub type C = Rc>>; diff --git a/src/dual.rs b/src/dual.rs index d2801d6..5b05e7a 100644 --- a/src/dual.rs +++ b/src/dual.rs @@ -1,7 +1,7 @@ use std::{fmt::{Debug, Display}, iter::{Sum, repeat}, ops::{Add, AddAssign, Deref, Div, Mul, Neg, Sub, SubAssign}}; use approx::{AbsDiffEq, RelativeEq}; -use crate::{fmt::Fmt, to::To, shape::{InputSpec, Shape, Duals}}; +use crate::{fmt::Fmt, to::To}; use nalgebra::{ComplexField, Dyn, Matrix, RealField, U1}; use num_dual::{Derivative, DualDVec64}; use num_traits::Zero; diff --git a/src/scene.rs b/src/scene.rs index 846fde6..4fc1363 100644 --- a/src/scene.rs +++ b/src/scene.rs @@ -508,8 +508,8 @@ pub mod tests { ("-12-", 1.0010372353827426), ("--2-", 1.26689560279433), ("-1--", 1.2668956027943392), - ("---3", 2.9962311616537862), - ("0---", 2.9962647199737296), + ("---3", 2.2443754306663317), + ("0---", 2.2443754306663326), ].into(); assert_eq!(regions.len(), expected.len()); match env::var("GEN_VALS").map(|s| s.parse::().unwrap()).ok() { From d7f7461253b1383bc2e1ba3a93116bcfd5fc335b Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 14:57:23 -0400 Subject: [PATCH 17/18] circle, region cleanup --- src/circle.rs | 124 +++++++++++++++++++++++++++---------- src/hull.rs | 2 +- src/region.rs | 165 +++++++++++++++++++++++++++++--------------------- 3 files changed, 189 insertions(+), 102 deletions(-) diff --git a/src/circle.rs b/src/circle.rs index 84f7f63..11d2d3b 100644 --- a/src/circle.rs +++ b/src/circle.rs @@ -1,13 +1,27 @@ -use std::{fmt::{Display, self}, ops::{Mul, Add, Neg, Div, Sub}, f64::consts::PI}; +use std::{ + f64::consts::PI, + fmt::{self, Display}, + ops::{Add, Div, Mul, Neg, Sub}, +}; +use crate::{ + coord_getter::{coord_getter, CoordGetter}, + dual::{Dual, D}, + ellipses::xyrr::{UnitCircleGap, XYRR}, + intersect::Intersect, + math::{is_normal::IsNormal, recip::Recip}, + r2::R2, + rotate::{Rotate as _Rotate, RotateArg}, + shape::{AreaArg, Duals, Shape, Shapes}, + sqrt::Sqrt, + to::To, + transform::Transform::{self, Rotate, Scale, ScaleXY, Translate}, + transform::{CanTransform, Projection}, +}; use derive_more::From; use log::debug; use serde::{Deserialize, Serialize}; use tsify::Tsify; -use crate::{ - dual::{D, Dual}, - r2::R2, rotate::{Rotate as _Rotate, RotateArg}, shape::{Duals, Shape, Shapes, AreaArg}, transform::{Projection, CanTransform}, transform::Transform::{Rotate, Scale, ScaleXY, Translate, self}, ellipses::xyrr::{XYRR, UnitCircleGap}, sqrt::Sqrt, math::{is_normal::IsNormal, recip::Recip}, to::To, intersect::Intersect, coord_getter::{CoordGetter, coord_getter} -}; #[derive(Debug, Clone, Copy, From, PartialEq, Tsify, Serialize, Deserialize)] pub struct Circle { @@ -35,7 +49,7 @@ impl Circle { let uy = (y - self.c.y) / self.r; let uy2 = uy * uy; if uy2 > 1. { - return vec![] + return vec![]; } let ux1 = (1. - uy2).sqrt(); let ux0 = -ux1; @@ -53,7 +67,10 @@ impl Circle { impl Circle { pub fn v(&self) -> Circle { - Circle { c: self.c.v(), r: self.r.v() } + Circle { + c: self.c.v(), + r: self.r.v(), + } } pub fn n(&self) -> usize { self.c.x.d().len() @@ -79,14 +96,15 @@ pub trait UnitIntersectionsArg + Mul + Div + Div -{} +{ +} impl UnitIntersectionsArg for f64 {} impl UnitIntersectionsArg for Dual {} impl Circle where - f64: Add + f64: Add, { pub fn unit_intersections(&self) -> Vec> { let cx = self.c.x.clone(); @@ -122,19 +140,33 @@ where }; let mut intersections: Vec> = Vec::new(); if x0.is_normal() && y0.is_normal() { - intersections.push(R2 { x: x0.clone(), y: y0.clone() }); + intersections.push(R2 { + x: x0.clone(), + y: y0.clone(), + }); } if x1.is_normal() && y1.is_normal() { - intersections.push(R2 { x: x1.clone(), y: y1.clone() }); + intersections.push(R2 { + x: x1.clone(), + y: y1.clone(), + }); } - debug!("Circle::unit_intserctions: {}, {} intersections: {:?}", self, intersections.len(), intersections); + debug!( + "Circle::unit_intserctions: {}, {} intersections: {:?}", + self, + intersections.len(), + intersections + ); intersections } } impl> To> for Circle { fn to(self) -> Circle { - Circle { c: self.c.to(), r: self.r.to() } + Circle { + c: self.c.to(), + r: self.r.to(), + } } } @@ -145,7 +177,7 @@ impl To> for Circle { r: R2 { x: self.r.clone(), y: self.r.clone(), - } + }, } } } @@ -153,7 +185,10 @@ impl To> for Circle { impl Mul> for R2 { type Output = R2; fn mul(self, rhs: R2) -> Self::Output { - R2 { x: self.x * rhs.x, y: self.y * rhs.y } + R2 { + x: self.x * rhs.x, + y: self.y * rhs.y, + } } } pub trait TransformD @@ -174,36 +209,39 @@ impl TransformR2 for R2 {} impl TransformR2 for R2 {} impl CanTransform for Circle -where R2: TransformR2, +where + R2: TransformR2, { type Output = Shape; fn transform(&self, transform: &Transform) -> Shape { match transform { - Translate(v) => - Circle { - c: self.c.clone() + v.clone(), - r: self.r.clone() - }.into(), + Translate(v) => Circle { + c: self.c.clone() + v.clone(), + r: self.r.clone(), + } + .into(), Scale(s) => { let r = &self.r; Circle { c: self.c.clone() * s.clone(), r: r.clone() * s.clone(), - }.into() + } + .into() } ScaleXY(s) => { let r = &self.r; XYRR { c: self.c.clone() * s.clone(), r: s * r.clone(), - }.into() - }, + } + .into() + } Rotate(a) => { // let c = rotate::Rotate::rotate(&self.c.clone(), a); let c = self.c.clone().rotate(a); let r = self.r.clone(); - Circle { c, r, }.into() - }, + Circle { c, r }.into() + } } } } @@ -232,7 +270,10 @@ impl Circle { pub fn xyrr(&self) -> XYRR { XYRR { c: self.c.clone(), - r: R2 { x: self.r.clone(), y: self.r.clone() }, + r: R2 { + x: self.r.clone(), + y: self.r.clone(), + }, } } } @@ -298,17 +339,26 @@ mod tests { use super::*; - use crate::{intersect::Intersect, duals::{D, Z}}; + use crate::{ + duals::{D, Z}, + intersect::Intersect, + }; pub fn r2(x: f64, dx: Vec, y: f64, dy: Vec) -> R2 { - R2 { x: Dual::new(x, dx), y: Dual::new(y, dy) } + R2 { + x: Dual::new(x, dx), + y: Dual::new(y, dy), + } } fn swap_v(v: Vec) -> Vec { [&v[3..], &v[..3]].concat() } fn swap(p: R2) -> R2 { - R2 { x: Dual::new(p.x.v(), swap_v(p.x.d())), y: Dual::new(p.y.v(), swap_v(p.y.d())) } + R2 { + x: Dual::new(p.x.v(), swap_v(p.x.d())), + y: Dual::new(p.y.v(), swap_v(p.y.d())), + } } fn check(c0: Circle, c1: Circle, expected0: R2, expected1: R2) { @@ -337,9 +387,17 @@ mod tests { let c1 = c1 * scale + R2 { x: dx, y: dy }; let R2 { x: e0x, y: e0y } = expected0.clone(); let R2 { x: e1x, y: e1y } = expected1.clone(); - let transform = |d: Dual, o: i64| Dual::new(d.v() * (scale as f64) + (o as f64), d.d().clone()); - let e0 = R2 { x: transform(e0x, dx), y: transform(e0y, dy) }; - let e1 = R2 { x: transform(e1x, dx), y: transform(e1y, dy) }; + let transform = |d: Dual, o: i64| { + Dual::new(d.v() * (scale as f64) + (o as f64), d.d().clone()) + }; + let e0 = R2 { + x: transform(e0x, dx), + y: transform(e0y, dy), + }; + let e1 = R2 { + x: transform(e1x, dx), + y: transform(e1y, dy), + }; check(c0, c1, e0.clone(), e1.clone()); // The "dual" circles were created in the opposite order, swap the first and last 3 derivative components. check(c1, c0, swap(e0), swap(e1)); diff --git a/src/hull.rs b/src/hull.rs index 024448b..ee71b18 100644 --- a/src/hull.rs +++ b/src/hull.rs @@ -8,7 +8,7 @@ where R2: To>, { pub fn area(&self) -> D { let polygon_area = Region::polygon_area(&self); - let secant_area = Region::secant_area("", &self, &self.0.iter().map(|s| s.edge.borrow().set_idx()).collect()); + let secant_area = Region::secant_area(&self); polygon_area + secant_area } } \ No newline at end of file diff --git a/src/region.rs b/src/region.rs index fa7febe..1ca0be8 100644 --- a/src/region.rs +++ b/src/region.rs @@ -1,10 +1,26 @@ -use std::{fmt::{Formatter, Display, self}, ops::{Add, Sub}, iter::Sum, collections::{BTreeSet, BTreeMap}, rc::Rc, cell::RefCell}; +use std::{ + cell::RefCell, + collections::{BTreeMap, BTreeSet}, + fmt::{self, Display, Formatter}, + iter::Sum, + ops::{Add, Sub}, + rc::Rc, +}; use itertools::Itertools; -use log::debug; use ordered_float::OrderedFloat; -use crate::{segment::Segment, edge::{Edge, EdgeArg, E}, math::{abs::{Abs, AbsArg}, deg::Deg}, r2::R2, to::To, dual::Dual, component::C, shape::Shape, theta_points::ThetaPoints}; +use crate::{ + component::C, + dual::Dual, + edge::{Edge, EdgeArg, E}, + math::abs::{Abs, AbsArg}, + r2::R2, + segment::Segment, + shape::Shape, + theta_points::ThetaPoints, + to::To, +}; #[derive(Debug, Clone)] pub struct Region { @@ -20,22 +36,21 @@ pub struct Region { pub type R = Rc>>; -pub trait RegionArg -: EdgeArg -+ AbsArg -+ Sum -+ Add -+ Sub -{} +pub trait RegionArg: EdgeArg + AbsArg + Sum + Add + Sub {} impl RegionArg for f64 {} impl RegionArg for Dual {} impl Region -where R2: To>, +where + R2: To>, { - pub fn new(key: String, segments: Vec>, container_set_idxs: BTreeSet) -> Self { + pub fn new( + key: String, + segments: Vec>, + container_set_idxs: BTreeSet, + ) -> Self { let polygon_area = Self::polygon_area(&segments); - let secant_area = Self::secant_area(&key, &segments, &container_set_idxs); + let secant_area = Self::secant_area(&segments); let total_area = (polygon_area.clone() + secant_area.clone()).abs(); // debug!( // "Region {} polygon_area: {}, secant_area: {}, total: {}", @@ -48,7 +63,7 @@ where R2: To>, key, segments, container_set_idxs, - child_components: vec![], // populated by `Scene`, once all `Component`s have been created + child_components: vec![], // populated by `Scene`, once all `Component`s have been created polygon_area, secant_area, total_area, @@ -58,33 +73,21 @@ where R2: To>, self.segments.len() } pub fn polygon_area(segments: &Vec>) -> D { - segments.iter().map(|s| { - let cur = s.start().borrow().p.clone(); - let nxt = s.end().borrow().p.clone(); - cur.x * nxt.y - cur.y * nxt.x - }).sum::() / 2. + segments + .iter() + .map(|s| { + let cur = s.start().borrow().p.clone(); + let nxt = s.end().borrow().p.clone(); + cur.x * nxt.y - cur.y * nxt.x + }) + .sum::() + / 2. } - pub fn secant_area(key: &str, segments: &Vec>, container_set_idxs: &BTreeSet) -> D { - let is_singleton = segments.len() == 1; - segments.iter().map(|s| { - s.secant_area() - // let area = s.secant_area(); - // let edge = s.edge.borrow(); - // let set_idx = edge.set_idx(); - // if key == "---3" { - // debug!( - // " Region {} secant_area, set {} ({} → {} {}): {} (container_set_idxs {:?})", - // key, - // set_idx, - // Into::::into(edge.theta0.clone()).deg_str(), - // Into::::into(edge.theta1.clone()).deg_str(), - // if s.fwd { "fwd" } else { "rev" }, - // Into::::into(area.clone()), - // container_set_idxs, - // ); - // } - // if is_singleton || container_set_idxs.contains(&set_idx) { area } else { -area } - }).sum::() + pub fn secant_area(segments: &Vec>) -> D { + segments + .iter() + .map(|s| { s.secant_area() }) + .sum::() } /// Area of this region (excluding any child components) pub fn area(&self) -> D { @@ -102,7 +105,7 @@ where R2: To>, return false; } if ch != '*' && !is_container { - return false + return false; } } true @@ -111,29 +114,42 @@ where R2: To>, impl Region { pub fn segments_for_set(&self, set_idx: usize) -> Vec<&Segment> { - self.segments.iter().filter(|s| { - s.edge.borrow().set_idx() == set_idx - }).collect() + self.segments + .iter() + .filter(|s| s.edge.borrow().set_idx() == set_idx) + .collect() } pub fn edges_for_set(&self, set_idx: usize) -> Vec> { - self.segments_for_set(set_idx).iter().map(|s| s.edge.clone()).collect() + self.segments_for_set(set_idx) + .iter() + .map(|s| s.edge.clone()) + .collect() } } impl + PartialOrd> Region -where Shape: From> +where + Shape: From>, { pub fn contains(&self, p: &R2, all_shapes: &BTreeMap>) -> bool { let y = p.y; - let mut points_at_y: Vec<(usize, f64, f64)> = all_shapes.into_iter().flat_map(|(idx, s)| { - s.at_y(y).into_iter().map(|x| { - let p = R2 { x, y }; - let theta = s.theta(&p); - (*idx, x, theta) + let mut points_at_y: Vec<(usize, f64, f64)> = all_shapes + .into_iter() + .flat_map(|(idx, s)| { + s.at_y(y).into_iter().map(|x| { + let p = R2 { x, y }; + let theta = s.theta(&p); + (*idx, x, theta) + }) }) - }).collect(); + .collect(); points_at_y.sort_by_cached_key(|(_, x, _)| OrderedFloat(*x)); - let component_container_set_idxs: BTreeSet = self.container_set_idxs.iter().filter(|set_idx| all_shapes.contains_key(set_idx)).cloned().collect(); + let component_container_set_idxs: BTreeSet = self + .container_set_idxs + .iter() + .filter(|set_idx| all_shapes.contains_key(set_idx)) + .cloned() + .collect(); let mut cur_set_idxs: BTreeSet = BTreeSet::new(); // debug!("Checking containment: region {}, p: {}, shapes {}, points_at_y: {:?}", self.key, p, all_shapes.keys().join(","), points_at_y); for (idx, (prv, cur)) in points_at_y.into_iter().tuple_windows().enumerate() { @@ -151,16 +167,24 @@ where Shape: From> return false; } let prv_edges = self.edges_for_set(prv.0); - if prv_edges.iter().find(|edge| edge.borrow().contains_theta(prv.2)).is_none() { + if prv_edges + .iter() + .find(|edge| edge.borrow().contains_theta(prv.2)) + .is_none() + { // debug!(" breaking between {} and {}: {} does not contain theta {}", prv.1, x, prv_edges.iter().map(|e| format!("{}", e.borrow())).join(","), prv.2); - return false + return false; } let cur_edges = self.edges_for_set(cur.0); - if cur_edges.iter().find(|edge| edge.borrow().contains_theta(cur.2)).is_none() { + if cur_edges + .iter() + .find(|edge| edge.borrow().contains_theta(cur.2)) + .is_none() + { // debug!(" breaking between {} and {}: {} does not contain theta {}", prv.1, x, cur_edges.iter().map(|e| format!("{}", e.borrow())).join(","), cur.2); - return false + return false; } - return true + return true; } if cur_set_idxs.contains(&set_idx) { // debug!(" removing set_idx {}", set_idx); @@ -170,23 +194,28 @@ where Shape: From> cur_set_idxs.insert(set_idx); } } - return false + return false; } } impl Display for Region where - Edge: Display + Edge: Display, { fn fmt(&self, f: &mut Formatter<'_>) -> fmt::Result { write!( - f, "R({}\n\t{}\n)", - self.container_set_idxs.iter().map(|i| { - format!("{}", i) - }).collect::>().join(", "), - self.segments.iter().map(|s| { - format!("{}", s) - }).collect::>().join(",\n\t") + f, + "R({}\n\t{}\n)", + self.container_set_idxs + .iter() + .map(|i| { format!("{}", i) }) + .collect::>() + .join(", "), + self.segments + .iter() + .map(|s| { format!("{}", s) }) + .collect::>() + .join(",\n\t") ) } -} \ No newline at end of file +} From 36f814eea74cc6a3c552a79b832661abae7553b2 Mon Sep 17 00:00:00 2001 From: Ryan Williams Date: Mon, 9 Oct 2023 19:30:07 +0000 Subject: [PATCH 18/18] update linux testdata --- testdata/centroid_repel/linux.csv | 58 +++---- testdata/mpower_spike/linux.csv | 104 +++++++++++- testdata/variant_callers/linux.csv | 202 ++++++++++++------------ testdata/variant_callers_diag/linux.csv | 202 ++++++++++++------------ testdata/webapp_bug1/linux.csv | 202 ++++++++++++------------ 5 files changed, 433 insertions(+), 335 deletions(-) diff --git a/testdata/centroid_repel/linux.csv b/testdata/centroid_repel/linux.csv index 542d48b..6350d25 100644 --- a/testdata/centroid_repel/linux.csv +++ 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