CRAN release of rpact version 3.3.0

.gitignore

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+/MD5

DESCRIPTION

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+Package: rpact
+Title: Confirmatory Adaptive Clinical Trial Design and Analysis
+Version: 3.3.0
+Date: 2022-06-15
+Authors@R: c(
+	person(
+		given = "Gernot", 
+		family = "Wassmer", 
+		email = "gernot.wassmer@rpact.com", 
+		role = c("aut")),
+    person(
+    	given = "Friedrich", 
+    	family = "Pahlke", 
+    	email = "friedrich.pahlke@rpact.com", 
+    	role = c("aut", "cre"))
+    )
+Description: Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2016) <doi:10.1007/978-3-319-32562-0>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.
+License: LGPL-3
+Encoding: UTF-8
+LazyData: true
+URL: https://www.rpact.org
+BugReports: https://www.rpact.com/bugreport
+Language: en-US
+Depends: R (>= 3.5.0)
+Imports: methods, stats, utils, graphics, tools, Rcpp (>= 1.0.0)
+LinkingTo: Rcpp
+Suggests: parallel, ggplot2 (>= 2.2.0), testthat (>= 2.0.0), mnormt (>=
+        1.5-7), knitr (>= 1.19), rmarkdown (>= 1.10)
+VignetteBuilder: knitr, rmarkdown
+RoxygenNote: 7.2.0
+Collate: 'RcppExports.R' 'f_core_constants.R' 'f_core_utilities.R'
+        'f_core_assertions.R' 'f_analysis_utilities.R'
+        'f_parameter_set_utilities.R' 'class_core_parameter_set.R'
+        'class_core_plot_settings.R' 'f_analysis_base.R'
+        'class_analysis_dataset.R' 'f_core_plot.R' 'class_design.R'
+        'class_analysis_stage_results.R' 'class_analysis_results.R'
+        'class_time.R' 'class_design_set.R' 'f_design_utilities.R'
+        'class_design_plan.R' 'class_design_power_and_asn.R'
+        'class_event_probabilities.R' 'f_simulation_utilities.R'
+        'f_simulation_base_survival.R' 'class_simulation_results.R'
+        'class_summary.R' 'data.R' 'f_analysis_base_means.R'
+        'f_analysis_base_rates.R' 'f_analysis_base_survival.R'
+        'f_analysis_enrichment.R' 'f_analysis_enrichment_means.R'
+        'f_analysis_enrichment_rates.R'
+        'f_analysis_enrichment_survival.R' 'f_analysis_multiarm.R'
+        'f_analysis_multiarm_means.R' 'f_analysis_multiarm_rates.R'
+        'f_analysis_multiarm_survival.R' 'f_core_output_formats.R'
+        'f_design_fisher_combination_test.R'
+        'f_design_group_sequential.R'
+        'f_design_sample_size_calculator.R' 'f_simulation_base_means.R'
+        'f_simulation_base_rates.R' 'f_simulation_enrichment.R'
+        'f_simulation_enrichment_means.R'
+        'f_simulation_enrichment_rates.R'
+        'f_simulation_enrichment_survival.R' 'f_simulation_multiarm.R'
+        'f_simulation_multiarm_means.R' 'f_simulation_multiarm_rates.R'
+        'f_simulation_multiarm_survival.R' 'parameter_descriptions.R'
+        'pkgname.R'
+NeedsCompilation: yes
+Packaged: 2022-06-15 10:20:56 UTC; fried
+Author: Gernot Wassmer [aut],
+  Friedrich Pahlke [aut, cre]
+Maintainer: Friedrich Pahlke <friedrich.pahlke@rpact.com>
+Repository: CRAN
+Date/Publication: 2022-06-15 11:20:02 UTC

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+S3method(as.data.frame,AnalysisResults)
+S3method(as.data.frame,ParameterSet)
+S3method(as.data.frame,PowerAndAverageSampleNumberResult)
+S3method(as.data.frame,StageResults)
+S3method(as.data.frame,TrialDesign)
+S3method(as.data.frame,TrialDesignCharacteristics)
+S3method(as.data.frame,TrialDesignPlan)
+S3method(as.data.frame,TrialDesignSet)
+S3method(as.matrix,FieldSet)
+S3method(length,TrialDesignSet)
+S3method(names,AnalysisResults)
+S3method(names,FieldSet)
+S3method(names,SimulationResults)
+S3method(names,StageResults)
+S3method(names,TrialDesignSet)
+S3method(plot,AnalysisResults)
+S3method(plot,Dataset)
+S3method(plot,EventProbabilities)
+S3method(plot,NumberOfSubjects)
+S3method(plot,ParameterSet)
+S3method(plot,SimulationResults)
+S3method(plot,StageResults)
+S3method(plot,SummaryFactory)
+S3method(plot,TrialDesign)
+S3method(plot,TrialDesignPlan)
+S3method(plot,TrialDesignSet)
+S3method(print,Dataset)
+S3method(print,FieldSet)
+S3method(print,ParameterSet)
+S3method(print,SimulationResults)
+S3method(summary,AnalysisResults)
+S3method(summary,Dataset)
+S3method(summary,ParameterSet)
+S3method(summary,TrialDesignSet)
+export(.getAnalysisResultsMeansParallelComputing)
+export(getAccrualTime)
+export(getAnalysisResults)
+export(getAvailablePlotTypes)
+export(getClosedCombinationTestResults)
+export(getClosedConditionalDunnettTestResults)
+export(getConditionalPower)
+export(getConditionalRejectionProbabilities)
+export(getData)
+export(getData.SimulationResults)
+export(getDataSet)
+export(getDataset)
+export(getDesignCharacteristics)
+export(getDesignConditionalDunnett)
+export(getDesignFisher)
+export(getDesignGroupSequential)
+export(getDesignInverseNormal)
+export(getDesignSet)
+export(getEventProbabilities)
+export(getFinalConfidenceInterval)
+export(getFinalPValue)
+export(getGroupSequentialProbabilities)
+export(getHazardRatioByPi)
+export(getLambdaByMedian)
+export(getLambdaByPi)
+export(getLambdaStepFunction)
+export(getLogLevel)
+export(getLongFormat)
+export(getMedianByLambda)
+export(getMedianByPi)
+export(getNumberOfSubjects)
+export(getObjectRCode)
+export(getObservedInformationRates)
+export(getOutputFormat)
+export(getParameterCaption)
+export(getParameterName)
+export(getPiByLambda)
+export(getPiByMedian)
+export(getPiecewiseExponentialDistribution)
+export(getPiecewiseExponentialQuantile)
+export(getPiecewiseExponentialRandomNumbers)
+export(getPiecewiseSurvivalTime)
+export(getPlotSettings)
+export(getPowerAndAverageSampleNumber)
+export(getPowerMeans)
+export(getPowerRates)
+export(getPowerSurvival)
+export(getRawData)
+export(getRepeatedConfidenceIntervals)
+export(getRepeatedPValues)
+export(getSampleSizeMeans)
+export(getSampleSizeRates)
+export(getSampleSizeSurvival)
+export(getSimulatedRejectionsDelayedResponse)
+export(getSimulationEnrichmentMeans)
+export(getSimulationEnrichmentRates)
+export(getSimulationEnrichmentSurvival)
+export(getSimulationMeans)
+export(getSimulationMultiArmMeans)
+export(getSimulationMultiArmRates)
+export(getSimulationMultiArmSurvival)
+export(getSimulationRates)
+export(getSimulationSurvival)
+export(getStageResults)
+export(getTestActions)
+export(getWideFormat)
+export(kable)
+export(kable.ParameterSet)
+export(plotTypes)
+export(ppwexp)
+export(printCitation)
+export(qpwexp)
+export(rcmd)
+export(readDataset)
+export(readDatasets)
+export(resetLogLevel)
+export(rpwexp)
+export(setLogLevel)
+export(setOutputFormat)
+export(testPackage)
+export(writeDataset)
+export(writeDatasets)
+exportMethods("[")
+exportMethods(t)
+import(graphics)
+import(methods)
+import(stats)
+import(tools)
+import(utils)
+importFrom(Rcpp,evalCpp)
+importFrom(methods,new)
+useDynLib(rpact, .registration = TRUE)