Peregrine scripts.
| Name | Description |
|---|---|
check_beast2.sh |
Checks if BEAST2 and the BEAST2 NS package are installed correctly |
check_mcbette.sh |
Checks if mcbette and its dependencies are installed correctly |
install_babette.sh |
Installs babette, BEAST2 and the BEAST2 NS package |
install_beast2.sh |
Installs BEAST2 and the BEAST2 NS package |
install_mcbette.sh |
Installs mcbette, BEAST2 and the BEAST2 NS package |
install_pirouette.sh |
Installs pirouette, BEAST2 and the BEAST2 NS package |
install_razzo.sh |
Installs razzo, BEAST2 and the BEAST2 NS package |
run_r_cmd.sh |
Run an R command |
run_r_script.sh |
Run an R script |
run_r_script_with_x.sh |
Run an R script with the X Window system |
uninstall_beast2.sh |
Uninstalls BEAST2 and the BEAST2 NS package |
Usage, where [script_name] is the name of a script file:
sbatch [script_name]
For example:
sbatch install_beast2.sh
If a script fails, run it on the login node,
where [script_name] is the name of a script file:
./[script_name]
For example:
./install_beast2.sh
The login node and the running nodes are different environments.