diff --git a/vignettes/MsIO.Rmd b/vignettes/MsIO.Rmd index 7d4867d..1ae6c76 100644 --- a/vignettes/MsIO.Rmd +++ b/vignettes/MsIO.Rmd @@ -272,10 +272,10 @@ It is recommended to adjust these settings according to your specific study. ```{r} library(MsExperiment()) # Prepare parameter -param <- MetaboLightsParam(mtblsIs = "MTBLS575", +param <- MetaboLightsParam(mtblsId = "MTBLS575", assayName = paste0("a_MTBLS575_POS_INFEST_CTRL_", "mass_spectrometry.txt"), - filePattern = "1.cdf$|2.cdf$|7.cdf$|8.cdf$|9.cdf$") + filePattern = "cdf$") # Load MsExperiment object mse <- readMsObject(MsExperiment(), param)