pyproject.toml

[build-system]
requires = ["setuptools", "setuptools-scm"]
build-backend = "setuptools.build_meta"

[project]
name = "herbarium_phenology"
version = "0.1.1"
description = ""
license = { file = "LICENSE" }
authors = [{ name = "Raphael LaFrance", email = "rafelafrance@proton.me" }]
requires-python = ">=3.11"
dependencies = [
    "Pillow",
    "git-lfs",
    "ipython",
    "jupyter",
    "jupyterlab",
    "matplotlib",
    "numpy",
    "pandas",
    "pyarrow",
    "requests",
    "scikit-learn",
    "scikit-image",
    "scipy",
    "seaborn",
    "spacy",
    "torch",
    "torchmetrics",
    "torchvision",
    "transformers",
    "tqdm",
]
optional-dependencies.dev = [
    "autopep8",
    "bandit",
    "black",
    "ipyparallel",
    "isort",
    "jupyter_nbextensions_configurator",
    "jupyterlab-code-formatter",
    "jupyterlab-drawio",
    "jupyterlab-git",
    "jupyterlab-lsp",
    "jupyterlab-spellchecker",
    "nbdime",
    "neovim",
    "pre-commit",
    "pre-commit-hooks",
    "pydocstyle",
    "pylint",
    "python-lsp-server[all]",
    "ruff",
    "tensorboard",
    "yapf",
]

[tool.setuptools]
py-modules = []

[tool.pycodestyle]
ignore = "E402"

[tool.black]
line-length = 88
target_version = ["py310"]
include = '\.pyi?$'
exclude = '''(
      \.git
    | \.mypy_cache
    | \.venv
    | build
    | dist
    | data
    | junk
)'''

[tool.pylint]
max-line-length = 88
ignore = ["CVS"]
good-names = [
    "i",
    "j",
    "k",
    "x",
    "y",
    "_",
    "x0",
    "x1",
    "x2",
    "y0",
    "y1",
    "y2",
    "lb",
    "ln",
    "df",
    "lr",
]
design.max-args = 5                     # Maximum number of arguments for function / method.
design.max-attributes = 7               # Maximum number of attributes for a class (see R0902).
design.max-bool-expr = 5                # Maximum number of boolean expressions in an if statement (see R0916).
design.max-branches = 12                # Maximum number of branch for function / method body.
design.max-locals = 15                  # Maximum number of locals for function / method body.
design.max-parents = 7                  # Maximum number of parents for a class (see R0901).
design.max-public-methods = 20          # Maximum number of public methods for a class (see R0904).
design.max-returns = 6                  # Maximum number of return / yield for function / method body.
design.max-statements = 50              # Maximum number of statements in function / method body.
design.min-public-methods = 2           # Minimum number of public methods for a class (see R0903).
format.max-line-length = 79             # Maximum number of characters on a single line.
format.max-module-lines = 1000          # Maximum number of lines in a module.
logging.logging-format-style = "new"    # The type of string formatting that logging methods do. `old` means using % formatting, `new` is for `{}` formatting.
logging.logging-modules = ["logging"]   # Logging modules to check that the string format arguments are in logging function parameter format.
refactoring.max-nested-blocks = 5       # Maximum number of nested blocks for function / method body
reports.output-format = "parseable"     # Set the output format. Available formats are text, parseable, colorized, json, and msvs (visual studio)
reports.reports = true                  # Tells whether to display a full report or only the messages.
reports.score = true                    # Activate the evaluation score.
similarities.min-similarity-lines = 4   # Minimum lines number of a similarity.
disable = [
    "missing-module-docstring", # "C0114"
    "missing-class-docstring", # "C0115"
    "missing-function-docstring", # "C0116"
    "too-few-public-methods", # "R0903"
    "too-many-arguments", # "R0913"
]

[tool.pyright]
reportGeneralTypeIssues = "none"
reportMissingImports = false

[tool.ruff]
line-length = 88
extend-select = [
    "BLE",
    "C4",
    "D",
    "E",
    "ERA",
    "I",
    "ISC",
    "N",
    "NPY",
    "PD",
    "PGH",
    "Q",
    "RET",
    "RSE",
    "RUF",
    "S",
    "SIM",
    "T20",
    "TCH",
    "TID",
    "UP",
    "YTT",
]
show-fixes = true
ignore = ["D10", "D203", "D213", "ERA001", "PD901", "RET504", "RUF001", "S608", "SIM117", "T201", "TID252"]