diff --git a/assets/RNAseq_report.Rmd b/assets/RNAseq_report.Rmd index 906fcd41..3f1d849c 100644 --- a/assets/RNAseq_report.Rmd +++ b/assets/RNAseq_report.Rmd @@ -2058,7 +2058,7 @@ if (!isProvided(params$datasources)) { # Set default params # ------------------ pathway_pval_threshold <- ifelse(params$pathway_pval_threshold == -1, params$adj_pval_threshold, params$pathway_pval_threshold) -pathway_pval_text <- as.character(pathway_pval_threshold) +pathway_pval_text <- format(pathway_pval_threshold, scientific=F) # Set theme for graphs theme_set(theme_classic()) diff --git a/conf/test.config b/conf/test.config index 5280f668..72b43194 100644 --- a/conf/test.config +++ b/conf/test.config @@ -28,6 +28,7 @@ params { software_versions = 'https://raw.githubusercontent.com/qbic-pipelines/rnadeseq/dev/testdata/software_versions.csv' multiqc = 'https://raw.githubusercontent.com/qbic-pipelines/rnadeseq/dev/testdata/MultiQC.zip' run_pathway_analysis = true + pathway_pval_threshold = 0.0003 datasources = 'KEGG,REAC' genome = 'GRCm38' quote = 'https://raw.githubusercontent.com/qbic-pipelines/rnadeseq/dev/testdata/offer_example.pdf'