diff --git a/CHANGELOG.rst b/CHANGELOG.rst index ac68fbe..2b1f358 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,6 +1,20 @@ Changelog ============ +0.5.5 - Sulfur Io (2024-09-09) +--------------------------------------------- + +**Added** + +**Fixed** + +* [#52](https://github.com/qbic-pipelines/querynator/issues/52): issue that lead to an inconsitent number of fields for the CIViC evidences +* [#51](https://github.com/qbic-pipelines/querynator/issues/51): CGI evidences are now filtered by the specified cancer type + +**Dependencies** + +**Deprecated** + 0.5.4 - Sulfur Io (2024-07-24) --------------------------------------------- diff --git a/docs/usage.rst b/docs/usage.rst index 06ee7f1..1ef5f29 100644 --- a/docs/usage.rst +++ b/docs/usage.rst @@ -277,7 +277,7 @@ The command above generates the following result directory: outdir ├── combined_files | ├── alterations_vep.tsv - | ├── biomarkers_linked.tsv + | ├── biomarkers_linked_filtered.tsv | ├── civic_cgi_vep.tsv | └── civic_vep.tsv ├── report diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results.zip b/example_files/cgi_test_out/cgi_test_out.cgi_results.zip index cae1f5e..77bc877 100644 Binary files a/example_files/cgi_test_out/cgi_test_out.cgi_results.zip and b/example_files/cgi_test_out/cgi_test_out.cgi_results.zip differ diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/alterations.tsv b/example_files/cgi_test_out/cgi_test_out.cgi_results/alterations.tsv index ec3ecd0..0051858 100644 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/alterations.tsv +++ b/example_files/cgi_test_out/cgi_test_out.cgi_results/alterations.tsv @@ -1,89 +1,89 @@ -Input ID CHROMOSOME POSITION REF ALT #CHROM POS ID QUAL FILTER INFO ALT_TYPE STRAND CGI-INFO CGI-Gene CGI-Protein Change CGI-Oncogenic Summary CGI-Oncogenic Prediction CGI-External oncogenic annotation CGI-Mutation CGI-Consequence CGI-Transcript CGI-STRAND CGI-Type -input01_1 1 11169361 C G 1 11169361 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3744699 snp + input01 MTOR R2505P oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:11169361 C>G missense_variant ENST00000361445 + SNV -input01_2 1 11169375 A C 1 11169375 . . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7734825 snp + input01 MTOR I2500M oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:11169375 A>C missense_variant ENST00000361445 + SNV -input01_3 1 11169377 T A 1 11169377 . . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4990350 snp + input01 MTOR I2500F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar chr1:11169377 T>A missense_variant ENST00000361445 + SNV -input01_4 1 11174420 C T 1 11174420 . . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4246169 snp + input01 MTOR E2419K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:11174420 C>T missense_variant ENST00000361445 + SNV -input01_5 1 11182179 G T 1 11182179 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2388004 snp + input01 MTOR Q2223K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:11182179 G>T missense_variant ENST00000361445 + SNV -input01_6 1 11184573 G A 1 11184573 . . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1527345 snp + input01 MTOR S2215F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb chr1:11184573 G>A missense_variant ENST00000361445 + SNV -input01_7 1 11184573 G T 1 11184573 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6270252 snp + input01 MTOR S2215Y oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:11184573 G>T missense_variant ENST00000361445 + SNV -input01_8 1 11184574 A T 1 11184574 . . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3102092 snp + input01 MTOR S2215T oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr1:11184574 A>T missense_variant ENST00000361445 + SNV -input01_9 1 11184580 G A 1 11184580 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1746155 snp + input01 MTOR P2213S oncogenic (predicted) driver (oncodriveMUT) chr1:11184580 G>A missense_variant ENST00000361445 + SNV -input01_10 1 11187094 G T 1 11187094 . . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=1313945 snp + input01 MTOR F2108L oncogenic (predicted) driver (oncodriveMUT) chr1:11187094 G>T missense_variant ENST00000361445 + SNV -input01_11 1 11187857 C T 1 11187857 . . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3236047 snp + input01 MTOR E2014K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:11187857 C>T missense_variant ENST00000361445 + SNV -input01_12 1 11188519 G A 1 11188519 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8700937 snp + input01 MTOR H1968Y oncogenic (predicted) driver (oncodriveMUT) chr1:11188519 G>A missense_variant ENST00000361445 + SNV -input01_13 1 11217229 G C 1 11217229 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5108921 snp + input01 MTOR C1483W oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar chr1:11217229 G>C missense_variant ENST00000361445 + SNV -input01_14 1 11217230 C A 1 11217230 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3380766 snp + input01 MTOR C1483F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb chr1:11217230 C>A missense_variant ENST00000361445 + SNV -input01_15 1 11217230 C T 1 11217230 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2978136 snp + input01 MTOR C1483Y oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb chr1:11217230 C>T missense_variant ENST00000361445 + SNV -input01_16 1 11217231 A G 1 11217231 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1606415 snp + input01 MTOR C1483R oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb chr1:11217231 A>G missense_variant ENST00000361445 + SNV -input01_17 1 11217299 A G 1 11217299 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9704791 snp + input01 MTOR L1460P oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:11217299 A>G missense_variant ENST00000361445 + SNV -input01_18 1 11856378 G A 1 11856378 . . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=9915688 snp + input01 MTHFR A263V non-oncogenic passenger (oncodriveMUT) chr1:11856378 G>A missense_variant ENST00000376585 + SNV -input01_19 1 16458722 C T 1 16458722 . . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2437215 snp + input01 EPHA2 R721Q oncogenic (predicted) driver (oncodriveMUT) chr1:16458722 C>T missense_variant ENST00000358432 + SNV -input01_20 1 16464489 C G 1 16464489 . . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5087472 snp + input01 EPHA2 G391R oncogenic (annotated) passenger (oncodriveMUT) clinvar chr1:16464489 C>G missense_variant ENST00000358432 + SNV -input01_21 1 16464489 C T 1 16464489 . . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=7008926 snp + input01 EPHA2 G391R non-oncogenic passenger (oncodriveMUT) chr1:16464489 C>T missense_variant ENST00000358432 + SNV -input01_22 1 23235518 G A 1 23235518 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8708707 snp + input01 EPHB2 G786R oncogenic (predicted and annotated) driver (oncodriveMUT) clinvar chr1:23235518 G>A missense_variant ENST00000400191 + SNV -input01_23 1 36933434 G A 1 36933434 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=6671862 snp + input01 CSF3R T618I oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:36933434 G>A missense_variant ENST00000373103 + SNV -input01_24 1 36933444 T C 1 36933444 . . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=4711307 snp + input01 CSF3R T615A oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar chr1:36933444 T>C missense_variant ENST00000373103 + SNV -input01_25 1 43814978 A T 1 43814978 . . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=9112045 snp + input01 MPL S505C oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar chr1:43814978 A>T missense_variant ENST00000372470 + SNV -input01_26 1 43814979 G A 1 43814979 . . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=5288713 snp + input01 MPL S505N oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:43814979 G>A missense_variant ENST00000372470 + SNV -input01_27 1 43815009 G T 1 43815009 . . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=4722228 snp + input01 MPL W515L oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr1:43815009 G>T missense_variant ENST00000372470 + SNV -input01_28 1 65312347 C A 1 65312347 . . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=2491223 snp + input01 JAK1 V658F oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:65312347 C>A missense_variant ENST00000672434 + SNV -input01_29 1 65312382 G A 1 65312382 . . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=8899969 snp + input01 JAK1 S646F oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr1:65312382 G>A missense_variant ENST00000672434 + SNV -input01_30 1 65312418 G T 1 65312418 . . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=1538728 snp + input01 JAK1 A634D oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb chr1:65312418 G>T missense_variant ENST00000672434 + SNV -input01_31 1 115256528 T A 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4658766 snp + input01 NRAS Q61H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb chr1:115256528 T>A missense_variant ENST00000369535 + SNV -input01_32 1 115256528 T G 1 115256528 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4115311 snp + input01 NRAS Q61H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar chr1:115256528 T>G missense_variant ENST00000369535 + SNV -input01_33 1 115256528 TT CA 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8393236 mnp + input01 NRAS Q61L oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr1:115256528-115256529 TT>CA missense_variant ENST00000369535 + MNV -input01_34 1 115256528 TT CC 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2428627 mnp + input01 NRAS Q61R oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr1:115256528-115256529 TT>CC missense_variant ENST00000369535 + MNV -input01_35 1 115256529 T A 1 115256529 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4927461 snp + input01 NRAS Q61L oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb chr1:115256529 T>A missense_variant ENST00000369535 + SNV -input01_36 1 115256529 T C 1 115256529 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3564378 snp + input01 NRAS Q61R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb chr1:115256529 T>C missense_variant ENST00000369535 + SNV -input01_37 1 115256529 TG CT 1 115256529 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8880916 mnp + input01 NRAS Q61R oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr1:115256529-115256530 TG>CT missense_variant ENST00000369535 + MNV -input01_38 1 115256529 T G 1 115256529 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7049806 snp + input01 NRAS Q61P oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr1:115256529 T>G missense_variant ENST00000369535 + SNV -input01_39 1 115256530 G A 1 115256530 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1923576 snp + input01 NRAS Q61* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr1:115256530 G>A stop_gained ENST00000369535 + SNV -input01_40 1 115256530 G C 1 115256530 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3726287 snp + input01 NRAS Q61E oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr1:115256530 G>C missense_variant ENST00000369535 + SNV -input01_41 1 115256530 G T 1 115256530 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9040406 snp + input01 NRAS Q61K oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr1:115256530 G>T missense_variant ENST00000369535 + SNV -input01_42 1 115258730 C T 1 115258730 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9146704 snp + input01 NRAS A18T oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar chr1:115258730 C>T missense_variant ENST00000369535 + SNV -input01_43 1 115258744 C A 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4683735 snp + input01 NRAS G13V oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr1:115258744 C>A missense_variant ENST00000369535 + SNV -input01_44 1 115258744 C G 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5046267 snp + input01 NRAS G13A oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr1:115258744 C>G missense_variant ENST00000369535 + SNV -input01_45 1 115258744 C T 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1004259 snp + input01 NRAS G13D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr1:115258744 C>T missense_variant ENST00000369535 + SNV -input01_46 1 115258745 C A 1 115258745 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2321116 snp + input01 NRAS G13C oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr1:115258745 C>A missense_variant ENST00000369535 + SNV -input01_47 1 115258745 C G 1 115258745 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5441901 snp + input01 NRAS G13R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr1:115258745 C>G missense_variant ENST00000369535 + SNV -input01_48 1 115258745 C T 1 115258745 . . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2666427 snp + input01 NRAS G13S oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr1:115258745 C>T missense_variant ENST00000369535 + SNV -input01_49 1 115258747 C A 1 115258747 . . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9188595 snp + input01 NRAS G12V oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr1:115258747 C>A missense_variant ENST00000369535 + SNV -input01_50 1 115258747 C G 1 115258747 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7339764 snp + input01 NRAS G12A oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr1:115258747 C>G missense_variant ENST00000369535 + SNV -input01_51 1 115258747 C T 1 115258747 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6610279 snp + input01 NRAS G12D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr1:115258747 C>T missense_variant ENST00000369535 + SNV -input01_52 7 55221821 GC AA 7 55221821 . . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1768798 mnp + input01 EGFR A289N oncogenic (predicted and annotated) driver (oncodriveMUT) clinvar chr7:55221821-55221822 GC>AA missense_variant ENST00000275493 + MNV -input01_53 7 55221822 C A 7 55221822 . . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3892747 snp + input01 EGFR A289D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar chr7:55221822 C>A missense_variant ENST00000275493 + SNV -input01_54 9 80409488 T C 9 80409488 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3098257 snp + input01 GNAQ Q209R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr9:80409488 T>C missense_variant ENST00000286548 + SNV -input01_55 9 80409488 TG AA 9 80409488 . . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6921082 mnp + input01 GNAQ Q209L oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr9:80409488-80409489 TG>AA missense_variant ENST00000286548 + MNV -input01_56 10 43609078 TTCCCTGAGGAGGAGAAGTGCTTCTGC - 10 43609077 . . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8038054 indel + input01 RET FPEEEKCFC612-620- non-oncogenic passenger (oncodriveMUT) chr10:43609078-43609078 TTCCCTGAGGAGGAGAAGTGCTTCTGC>- inframe_deletion ENST00000355710 + DEL -input01_57 11 534289 C T 11 534289 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings:1crp.A&PDB-ENSP_mappings:1crq.A&PDB-ENSP_mappings:1crr.A&PDB-ENSP_mappings:1ctq.A&PDB-ENSP_mappings:1gnp.A&PDB-ENSP_mappings:1gnq.A&PDB-ENSP_mappings:1gnr.A&PDB-ENSP_mappings:1he8.B&PDB-ENSP_mappings:1iaq.A&PDB-ENSP_mappings:1iaq.B&PDB-ENSP_mappings:1iaq.C&PDB-ENSP_mappings:1ioz.A&PDB-ENSP_mappings:1jah.A&PDB-ENSP_mappings:1jai.A&PDB-ENSP_mappings:1k8r.A&PDB-ENSP_mappings:1lf0.A&PDB-ENSP_mappings:1lf5.A&PDB-ENSP_mappings:1lfd.B&PDB-ENSP_mappings:1lfd.D&PDB-ENSP_mappings:1nvu.Q&PDB-ENSP_mappings:1nvu.R&PDB-ENSP_mappings:1nvv.Q&PDB-ENSP_mappings:1nvv.R&PDB-ENSP_mappings:1nvw.Q&PDB-ENSP_mappings:1nvw.R&PDB-ENSP_mappings:1nvx.Q&PDB-ENSP_mappings:1nvx.R&PDB-ENSP_mappings:1p2s.A&PDB-ENSP_mappings:1p2t.A&PDB-ENSP_mappings:1p2u.A&PDB-ENSP_mappings:1p2v.A&PDB-ENSP_mappings:1plj.A&PDB-ENSP_mappings:1plk.A&PDB-ENSP_mappings:1pll.A&PDB-ENSP_mappings:1q21.A&PDB-ENSP_mappings:1qra.A&PDB-ENSP_mappings:1rvd.A&PDB-ENSP_mappings:1wq1.R&PDB-ENSP_mappings:1xcm.A&PDB-ENSP_mappings:1xd2.A&PDB-ENSP_mappings:1xd2.B&PDB-ENSP_mappings:1xj0.A&PDB-ENSP_mappings:1zvq.A&PDB-ENSP_mappings:1zw6.A&PDB-ENSP_mappings:221p.A&PDB-ENSP_mappings:2c5l.A&PDB-ENSP_mappings:2c5l.B&PDB-ENSP_mappings:2ce2.X&PDB-ENSP_mappings:2cl0.X&PDB-ENSP_mappings:2cl6.X&PDB-ENSP_mappings:2cl7.X&PDB-ENSP_mappings:2clc.X&PDB-ENSP_mappings:2cld.X&PDB-ENSP_mappings:2evw.X&PDB-ENSP_mappings:2lcf.A&PDB-ENSP_mappings:2lwi.A&PDB-ENSP_mappings:2n42.A&PDB-ENSP_mappings:2n46.A&PDB-ENSP_mappings:2q21.A&PDB-ENSP_mappings:2quz.A&PDB-ENSP_mappings:2rga.A&PDB-ENSP_mappings:2rgb.A&PDB-ENSP_mappings:2rgc.A&PDB-ENSP_mappings:2rgd.A&PDB-ENSP_mappings:2rge.A&PDB-ENSP_mappings:2rgg.A&PDB-ENSP_mappings:2uzi.R&PDB-ENSP_mappings:2vh5.R&PDB-ENSP_mappings:2x1v.A&Gene3D:3.40.50.300&PDB-ENSP_mappings:3ddc.A&PDB-ENSP_mappings:3i3s.R&PDB-ENSP_mappings:3k8y.A&PDB-ENSP_mappings:3k9l.A&PDB-ENSP_mappings:3k9l.B&PDB-ENSP_mappings:3k9l.C&PDB-ENSP_mappings:3k9n.A&PDB-ENSP_mappings:3kkm.A&PDB-ENSP_mappings:3kkn.A&PDB-ENSP_mappings:3kud.A&PDB-ENSP_mappings:3l8y.A&PDB-ENSP_mappings:3l8z.A&PDB-ENSP_mappings:3lbh.A&PDB-ENSP_mappings:3lbi.A&PDB-ENSP_mappings:3lbn.A&PDB-ENSP_mappings:3lo5.A&PDB-ENSP_mappings:3lo5.C&PDB-ENSP_mappings:3lo5.E&PDB-ENSP_mappings:3oiu.A&PDB-ENSP_mappings:3oiv.A&PDB-ENSP_mappings:3oiw.A&PDB-ENSP_mappings:3rry.A&PDB-ENSP_mappings:3rrz.A&PDB-ENSP_mappings:3rs0.A&PDB-ENSP_mappings:3rs2.A&PDB-ENSP_mappings:3rs3.A&PDB-ENSP_mappings:3rs4.A&PDB-ENSP_mappings:3rs5.A&PDB-ENSP_mappings:3rs7.A&PDB-ENSP_mappings:3rsl.A&PDB-ENSP_mappings:3rso.A&PDB-ENSP_mappings:3tgp.A&PDB-ENSP_mappings:421p.A&PDB-ENSP_mappings:4dlr.A&PDB-ENSP_mappings:4dls.A&PDB-ENSP_mappings:4dlt.A&PDB-ENSP_mappings:4dlu.A&PDB-ENSP_mappings:4dlv.A&PDB-ENSP_mappings:4dlw.A&PDB-ENSP_mappings:4dlx.A&PDB-ENSP_mappings:4dly.A&PDB-ENSP_mappings:4dlz.A&PDB-ENSP_mappings:4efl.A&PDB-ENSP_mappings:4efm.A&PDB-ENSP_mappings:4efn.A&PDB-ENSP_mappings:4g0n.A&PDB-ENSP_mappings:4g3x.A&PDB-ENSP_mappings:4k81.B&PDB-ENSP_mappings:4k81.D&PDB-ENSP_mappings:4k81.F&PDB-ENSP_mappings:4k81.H&PDB-ENSP_mappings:4l9s.A&PDB-ENSP_mappings:4l9w.A&PDB-ENSP_mappings:4nyi.Q&PDB-ENSP_mappings:4nyi.R&PDB-ENSP_mappings:4nyj.Q&PDB-ENSP_mappings:4nyj.R&PDB-ENSP_mappings:4nym.Q&PDB-ENSP_mappings:4nym.R&PDB-ENSP_mappings:4q21.A&PDB-ENSP_mappings:4rsg.A&PDB-ENSP_mappings:4uru.R&PDB-ENSP_mappings:4urv.R&PDB-ENSP_mappings:4urw.R&PDB-ENSP_mappings:4urx.R&PDB-ENSP_mappings:4ury.R&PDB-ENSP_mappings:4urz.R&PDB-ENSP_mappings:4us0.R&PDB-ENSP_mappings:4us1.R&PDB-ENSP_mappings:4us2.R&PDB-ENSP_mappings:4xvq.A&PDB-ENSP_mappings:4xvr.A&PDB-ENSP_mappings:521p.A&PDB-ENSP_mappings:5b2z.A&PDB-ENSP_mappings:5b30.A&PDB-ENSP_mappings:5e95.A&PDB-ENSP_mappings:5p21.A&PDB-ENSP_mappings:5vbe.A&PDB-ENSP_mappings:5vbz.A&PDB-ENSP_mappings:5vbz.B&PDB-ENSP_mappings:5vbz.C&PDB-ENSP_mappings:5wdo.A&PDB-ENSP_mappings:5wdp.A&PDB-ENSP_mappings:5wdq.A&PDB-ENSP_mappings:5wfo.Q&PDB-ENSP_mappings:5wfo.R&PDB-ENSP_mappings:5wfp.Q&PDB-ENSP_mappings:5wfp.R&PDB-ENSP_mappings:5wfq.Q&PDB-ENSP_mappings:5wfq.R&PDB-ENSP_mappings:5wfr.Q&PDB-ENSP_mappings:5wfr.R&PDB-ENSP_mappings:5wpl.A&PDB-ENSP_mappings:5wpl.D&PDB-ENSP_mappings:5wpl.G&PDB-ENSP_mappings:5wpl.J&PDB-ENSP_mappings:5x9s.A&PDB-ENSP_mappings:5zc6.A&PDB-ENSP_mappings:621p.A&PDB-ENSP_mappings:6amb.A&PDB-ENSP_mappings:6axg.B&PDB-ENSP_mappings:6axg.D&PDB-ENSP_mappings:6axg.F&PDB-ENSP_mappings:6axg.H&PDB-ENSP_mappings:6axg.J&PDB-ENSP_mappings:6axg.L&PDB-ENSP_mappings:6bvi.A&PDB-ENSP_mappings:6bvi.C&PDB-ENSP_mappings:6bvj.A&PDB-ENSP_mappings:6bvj.C&PDB-ENSP_mappings:6bvk.A&PDB-ENSP_mappings:6bvk.C&PDB-ENSP_mappings:6bvl.A&PDB-ENSP_mappings:6bvl.C&PDB-ENSP_mappings:6bvm.A&PDB-ENSP_mappings:6bvm.C&PDB-ENSP_mappings:6cuo.A&PDB-ENSP_mappings:6cuo.C&PDB-ENSP_mappings:6cup.A&PDB-ENSP_mappings:6cup.C&PDB-ENSP_mappings:6cur.A&PDB-ENSP_mappings:6cur.C&PDB-ENSP_mappings:6d55.A&PDB-ENSP_mappings:6d55.C&PDB-ENSP_mappings:6d56.A&PDB-ENSP_mappings:6d56.C&PDB-ENSP_mappings:6d59.A&PDB-ENSP_mappings:6d59.C&PDB-ENSP_mappings:6d5e.A&PDB-ENSP_mappings:6d5e.C&PDB-ENSP_mappings:6d5g.A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4587089 snp + input01 HRAS G12S oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr11:534289 C>T missense_variant ENST00000451590 + SNV -input01_58 11 8457665 A C 11 8457665 . . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5416609 snp + input01 STK33 F323L oncogenic (annotated) passenger (oncodriveMUT) clinvar chr11:8457665 A>C missense_variant ENST00000447869 + SNV -input01_59 11 32417908 - ACCGTACA 11 32417908 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=5798338 indel + input01 WT1 -386-387CTX non-oncogenic passenger (oncodriveMUT) chr11:32417908-32417909 ->ACCGTACA frameshift_variant ENST00000452863 + INS -input01_60 11 65830499 A C 11 65830499 . . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1782742 snp + input01 SF3B2 H666P oncogenic (annotated) passenger (oncodriveMUT) clinvar chr11:65830499 A>C missense_variant ENST00000322535 + SNV -input01_61 11 65830884 A G 11 65830884 . . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=8563176 snp + input01 SF3B2 E700G oncogenic (annotated) passenger (oncodriveMUT) clinvar chr11:65830884 A>G missense_variant ENST00000322535 + SNV -input01_62 11 67352689 A G 11 67352689 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=1154749 snp + input01 GSTP1 I105V non-oncogenic passenger (oncodriveMUT) chr11:67352689 A>G missense_variant ENST00000398606 + SNV -input01_63 11 108218044 A C 11 108218044 . . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=3561112 snp + input01 ATM N2875H oncogenic (predicted) driver (boostDM: non-tissue-specific model) chr11:108218044 A>C missense_variant ENST00000278616 + SNV -input01_64 13 48955550 C T 13 48955550 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2889115 snp + input01 RB1 R556* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr13:48955550 C>T stop_gained ENST00000267163 + SNV -input01_65 13 49027168 C T 13 49027168 . . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=4495364 snp + input01 RB1 R579* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr13:49027168 C>T stop_gained ENST00000267163 + SNV -input01_66 13 49037877 G T 13 49037877 . . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=5303302 snp + input01 RB1 C706F oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar chr13:49037877 G>T missense_variant ENST00000267163 + SNV -input01_67 13 49039164 G T 13 49039164 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9336397 snp + input01 RB1 E748* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr13:49039164 G>T stop_gained ENST00000267163 + SNV -input01_69 14 105243048 G T 14 105243048 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=6394018 snp + input01 AKT1 Q79K oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr14:105243048 G>T missense_variant ENST00000554581 + SNV -input01_71 14 105246551 C T 14 105246551 . . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1506234 snp + input01 AKT1 E17K oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr14:105246551 C>T missense_variant ENST00000554581 + SNV -input01_72 16 3788617 C T 16 3788617 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=7653957 snp + input01 CREBBP R1446H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr16:3788617 C>T missense_variant ENST00000262367 + SNV -input01_73 16 3788618 G A 16 3788618 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2970354 snp + input01 CREBBP R1446C oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr16:3788618 G>A missense_variant ENST00000262367 + SNV -input01_74 16 3788618 G C 16 3788618 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2785555 snp + input01 CREBBP R1446G oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr16:3788618 G>C missense_variant ENST00000262367 + SNV -input01_75 16 69745145 G A 16 69745145 . . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=7152809 snp + input01 NQO1 P187S non-oncogenic passenger (oncodriveMUT) chr16:69745145 G>A missense_variant ENST00000320623 + SNV -input01_76 16 81946260 C T 16 81946260 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=4985405 snp + input01 PLCG2 R665W oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb chr16:81946260 C>T missense_variant ENST00000564138 + SNV -input01_77 16 81962183 A C 16 81962183 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=9568332 snp + input01 PLCG2 L845F oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr16:81962183 A>C missense_variant ENST00000564138 + SNV -input01_78 16 81962183 A T 16 81962183 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2012808 snp + input01 PLCG2 L845F oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar chr16:81962183 A>T missense_variant ENST00000564138 + SNV -input01_79 17 7577022 G A 17 7577022 . . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=6850825 snp + input01 TP53 R306* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr17:7577022 G>A stop_gained ENST00000269305 + SNV -input01_80 17 7577081 T A 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=4829251 snp + input01 TP53 E286V oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) clinvar chr17:7577081 T>A missense_variant ENST00000269305 + SNV -input01_81 17 7577081 T C 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=5327814 snp + input01 TP53 E286G oncogenic (predicted) driver (boostDM: non-tissue-specific model) chr17:7577081 T>C missense_variant ENST00000269305 + SNV -input01_82 17 7577081 T G 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=6431520 snp + input01 TP53 E286A oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar chr17:7577081 T>G missense_variant ENST00000269305 + SNV -input01_83 17 7577082 C G 17 7577082 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9949104 snp + input01 TP53 E286Q oncogenic (predicted) driver (boostDM: non-tissue-specific model) chr17:7577082 C>G missense_variant ENST00000269305 + SNV -input01_84 18 48604787 G T 18 48604787 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=8014594 snp + input01 SMAD4 D537Y oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr18:48604787 G>T missense_variant ENST00000342988 + SNV -input01_85 19 1207021 C T 19 1207021 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=1501289 snp + input01 STK11 Q37* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi chr19:1207021 C>T stop_gained ENST00000326873 + SNV -input01_86 20 57484421 G T 20 57484421 . . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1074175 snp + input01 GNAS R844L oncogenic (annotated) passenger (oncodriveMUT) cgi chr20:57484421 G>T missense_variant ENST00000371100 + SNV -input01_87 20 57484596 A T 20 57484596 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=8157695 snp + input01 GNAS Q870L oncogenic (annotated) passenger (oncodriveMUT) cgi chr20:57484596 A>T missense_variant ENST00000371100 + SNV -input01_88 21 36231783 G A 21 36231783 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4326712 snp + input01 RUNX1 R201* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb chr21:36231783 G>A stop_gained ENST00000300305 + SNV -input01_89 22 41565529 G T 22 41565529 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=6578479 snp + input01 EP300 D1399Y oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar chr22:41565529 G>T missense_variant ENST00000263253 + SNV -input01_90 X 100611164 C G X 100611164 . . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3400584 snp + input01 BTK C515S non-oncogenic passenger (oncodriveMUT) chrX:100611164 C>G missense_variant ENST00000621635 + SNV +Input ID CHROMOSOME POSITION REF ALT #CHROM POS ID QUAL FILTER INFO ALT_TYPE STRAND CGI-INFO CGI-Gene CGI-Protein Change CGI-Oncogenic Summary CGI-Oncogenic Prediction CGI-External oncogenic annotation CGI-Mutation CGI-Consequence CGI-Transcript CGI-STRAND CGI-Type CGI-HGVS CGI-HGVSc CGI-HGVSp +input01_1 1 11169361 C G 1 11169361 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4580782 snp + input01 MTOR R2505P oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376127 chr1:11169361 C>G missense_variant ENST00000361445 + SNV ENST00000361445:c.7514G>C;p.(Arg2505Pro);p.(R2505P) ENST00000361445.9:c.7514G>C ENSP00000354558.4:p.Arg2505Pro +input01_2 1 11169375 A C 1 11169375 . . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3209279 snp + input01 MTOR I2500M oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376455 chr1:11169375 A>C missense_variant ENST00000361445 + SNV ENST00000361445:c.7500T>G;p.(Ile2500Met);p.(I2500M) ENST00000361445.9:c.7500T>G ENSP00000354558.4:p.Ile2500Met +input01_3 1 11169377 T A 1 11169377 . . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2558221 snp + input01 MTOR I2500F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:376456 chr1:11169377 T>A missense_variant ENST00000361445 + SNV ENST00000361445:c.7498A>T;p.(Ile2500Phe);p.(I2500F) ENST00000361445.9:c.7498A>T ENSP00000354558.4:p.Ile2500Phe +input01_4 1 11174420 C T 1 11174420 . . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8339125 snp + input01 MTOR E2419K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:156709 chr1:11174420 C>T missense_variant ENST00000361445 + SNV ENST00000361445:c.7255G>A;p.(Glu2419Lys);p.(E2419K) ENST00000361445.9:c.7255G>A ENSP00000354558.4:p.Glu2419Lys +input01_5 1 11182179 G T 1 11182179 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8043490 snp + input01 MTOR Q2223K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376128 chr1:11182179 G>T missense_variant ENST00000361445 + SNV ENST00000361445:c.6667C>A;p.(Gln2223Lys);p.(Q2223K) ENST00000361445.9:c.6667C>A ENSP00000354558.4:p.Gln2223Lys +input01_6 1 11184573 G A 1 11184573 . . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9978383 snp + input01 MTOR S2215F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:156703 chr1:11184573 G>A missense_variant ENST00000361445 + SNV ENST00000361445:c.6644C>T;p.(Ser2215Phe);p.(S2215F) ENST00000361445.9:c.6644C>T ENSP00000354558.4:p.Ser2215Phe +input01_7 1 11184573 G T 1 11184573 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7720974 snp + input01 MTOR S2215Y oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376129 chr1:11184573 G>T missense_variant ENST00000361445 + SNV ENST00000361445:c.6644C>A;p.(Ser2215Tyr);p.(S2215Y) ENST00000361445.9:c.6644C>A ENSP00000354558.4:p.Ser2215Tyr +input01_8 1 11184574 A T 1 11184574 . . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8254898 snp + input01 MTOR S2215T oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:376457 chr1:11184574 A>T missense_variant ENST00000361445 + SNV ENST00000361445:c.6643T>A;p.(Ser2215Thr);p.(S2215T) ENST00000361445.9:c.6643T>A ENSP00000354558.4:p.Ser2215Thr +input01_9 1 11184580 G A 1 11184580 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9718750 snp + input01 MTOR P2213S oncogenic (predicted) driver (oncodriveMUT) chr1:11184580 G>A missense_variant ENST00000361445 + SNV ENST00000361445:c.6637C>T;p.(Pro2213Ser);p.(P2213S) ENST00000361445.9:c.6637C>T ENSP00000354558.4:p.Pro2213Ser +input01_10 1 11187094 G T 1 11187094 . . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=5554766 snp + input01 MTOR F2108L oncogenic (predicted) driver (oncodriveMUT) chr1:11187094 G>T missense_variant ENST00000361445 + SNV ENST00000361445:c.6324C>A;p.(Phe2108Leu);p.(F2108L) ENST00000361445.9:c.6324C>A ENSP00000354558.4:p.Phe2108Leu +input01_11 1 11187857 C T 1 11187857 . . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5349064 snp + input01 MTOR E2014K oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376131 chr1:11187857 C>T missense_variant ENST00000361445 + SNV ENST00000361445:c.6040G>A;p.(Glu2014Lys);p.(E2014K) ENST00000361445.9:c.6040G>A ENSP00000354558.4:p.Glu2014Lys +input01_12 1 11188519 G A 1 11188519 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9546852 snp + input01 MTOR H1968Y oncogenic (predicted) driver (oncodriveMUT) chr1:11188519 G>A missense_variant ENST00000361445 + SNV ENST00000361445:c.5902C>T;p.(His1968Tyr);p.(H1968Y) ENST00000361445.9:c.5902C>T ENSP00000354558.4:p.His1968Tyr +input01_13 1 11217229 G C 1 11217229 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1777257 snp + input01 MTOR C1483W oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:376454 chr1:11217229 G>C missense_variant ENST00000361445 + SNV ENST00000361445:c.4449C>G;p.(Cys1483Trp);p.(C1483W) ENST00000361445.9:c.4449C>G ENSP00000354558.4:p.Cys1483Trp +input01_14 1 11217230 C A 1 11217230 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8667542 snp + input01 MTOR C1483F oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:190121 chr1:11217230 C>A missense_variant ENST00000361445 + SNV ENST00000361445:c.4448G>T;p.(Cys1483Phe);p.(C1483F) ENST00000361445.9:c.4448G>T ENSP00000354558.4:p.Cys1483Phe +input01_15 1 11217230 C T 1 11217230 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4564661 snp + input01 MTOR C1483Y oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:376453 chr1:11217230 C>T missense_variant ENST00000361445 + SNV ENST00000361445:c.4448G>A;p.(Cys1483Tyr);p.(C1483Y) ENST00000361445.9:c.4448G>A ENSP00000354558.4:p.Cys1483Tyr +input01_16 1 11217231 A G 1 11217231 . . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1009485 snp + input01 MTOR C1483R oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:374796 chr1:11217231 A>G missense_variant ENST00000361445 + SNV ENST00000361445:c.4447T>C;p.(Cys1483Arg);p.(C1483R) ENST00000361445.9:c.4447T>C ENSP00000354558.4:p.Cys1483Arg +input01_17 1 11217299 A G 1 11217299 . . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4987929 snp + input01 MTOR L1460P oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376130 chr1:11217299 A>G missense_variant ENST00000361445 + SNV ENST00000361445:c.4379T>C;p.(Leu1460Pro);p.(L1460P) ENST00000361445.9:c.4379T>C ENSP00000354558.4:p.Leu1460Pro +input01_18 1 11856378 G A 1 11856378 . . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=1650397 snp + input01 MTHFR A263V oncogenic (annotated) passenger (oncodriveMUT) clinvar:3520 chr1:11856378 G>A missense_variant ENST00000376585 + SNV ENST00000376585:c.788C>T;p.(Ala263Val);p.(A263V) ENST00000376585.6:c.788C>T ENSP00000365770.1:p.Ala263Val +input01_19 1 16458722 C T 1 16458722 . . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5762771 snp + input01 EPHA2 R721Q oncogenic (predicted and annotated) driver (oncodriveMUT) clinvar:13262 chr1:16458722 C>T missense_variant ENST00000358432 + SNV ENST00000358432:c.2162G>A;p.(Arg721Gln);p.(R721Q) ENST00000358432.8:c.2162G>A ENSP00000351209.5:p.Arg721Gln +input01_20 1 16464489 C G 1 16464489 . . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2255776 snp + input01 EPHA2 G391R oncogenic (annotated) passenger (oncodriveMUT) clinvar:376146 chr1:16464489 C>G missense_variant ENST00000358432 + SNV ENST00000358432:c.1171G>C;p.(Gly391Arg);p.(G391R) ENST00000358432.8:c.1171G>C ENSP00000351209.5:p.Gly391Arg +input01_21 1 16464489 C T 1 16464489 . . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=2306693 snp + input01 EPHA2 G391R non-oncogenic passenger (oncodriveMUT) chr1:16464489 C>T missense_variant ENST00000358432 + SNV ENST00000358432:c.1171G>A;p.(Gly391Arg);p.(G391R) ENST00000358432.8:c.1171G>A ENSP00000351209.5:p.Gly391Arg +input01_22 1 23235518 G A 1 23235518 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5480143 snp + input01 EPHB2 G786R oncogenic (predicted and annotated) driver (oncodriveMUT) clinvar:376739 chr1:23235518 G>A missense_variant ENST00000400191 + SNV ENST00000400191:c.2356G>A;p.(Gly786Arg);p.(G786R) ENST00000400191.7:c.2356G>A ENSP00000383053.3:p.Gly786Arg +input01_23 1 36933434 G A 1 36933434 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=2983255 snp + input01 CSF3R T618I oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:208339 chr1:36933434 G>A missense_variant ENST00000373103 + SNV ENST00000373103:c.1853C>T;p.(Thr618Ile);p.(T618I) ENST00000373103.5:c.1853C>T ENSP00000362195.1:p.Thr618Ile +input01_24 1 36933444 T C 1 36933444 . . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=8033200 snp + input01 CSF3R T615A oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar:376125 chr1:36933444 T>C missense_variant ENST00000373103 + SNV ENST00000373103:c.1843A>G;p.(Thr615Ala);p.(T615A) ENST00000373103.5:c.1843A>G ENSP00000362195.1:p.Thr615Ala +input01_25 1 43814978 A T 1 43814978 . . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=6094160 snp + input01 MPL S505C oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar:376029 chr1:43814978 A>T missense_variant ENST00000372470 + SNV ENST00000372470:c.1513A>T;p.(Ser505Cys);p.(S505C) ENST00000372470.9:c.1513A>T ENSP00000361548.3:p.Ser505Cys +input01_26 1 43814979 G A 1 43814979 . . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1785099 snp + input01 MPL S505N oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:14163 chr1:43814979 G>A missense_variant ENST00000372470 + SNV ENST00000372470:c.1514G>A;p.(Ser505Asn);p.(S505N) ENST00000372470.9:c.1514G>A ENSP00000361548.3:p.Ser505Asn +input01_27 1 43815009 G T 1 43815009 . . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=3731083 snp + input01 MPL W515L oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:14164 chr1:43815009 G>T missense_variant ENST00000372470 + SNV ENST00000372470:c.1544G>T;p.(Trp515Leu);p.(W515L) ENST00000372470.9:c.1544G>T ENSP00000361548.3:p.Trp515Leu +input01_28 1 65312347 C A 1 65312347 . . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=5887615 snp + input01 JAK1 V658F oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376030 chr1:65312347 C>A missense_variant ENST00000672434 + SNV ENST00000672434:c.1972G>T;p.(Val658Phe);p.(V658F) ENST00000672434.1:c.1972G>T ENSP00000499900.1:p.Val658Phe +input01_29 1 65312382 G A 1 65312382 . . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=9958612 snp + input01 JAK1 S646F oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376099 chr1:65312382 G>A missense_variant ENST00000672434 + SNV ENST00000672434:c.1937C>T;p.(Ser646Phe);p.(S646F) ENST00000672434.1:c.1937C>T ENSP00000499900.1:p.Ser646Phe +input01_30 1 65312418 G T 1 65312418 . . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=7084227 snp + input01 JAK1 A634D oncogenic (predicted and annotated) driver (oncodriveMUT) cgi,oncokb,clinvar:225075 chr1:65312418 G>T missense_variant ENST00000672434 + SNV ENST00000672434:c.1901C>A;p.(Ala634Asp);p.(A634D) ENST00000672434.1:c.1901C>A ENSP00000499900.1:p.Ala634Asp +input01_31 1 115256528 T A 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9141116 snp + input01 NRAS Q61H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar:373003 chr1:115256528 T>A missense_variant ENST00000369535 + SNV ENST00000369535:c.183A>T;p.(Gln61His);p.(Q61H) ENST00000369535.5:c.183A>T ENSP00000358548.4:p.Gln61His +input01_32 1 115256528 T G 1 115256528 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9191168 snp + input01 NRAS Q61H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar:375871 chr1:115256528 T>G missense_variant ENST00000369535 + SNV ENST00000369535:c.183A>C;p.(Gln61His);p.(Q61H) ENST00000369535.5:c.183A>C ENSP00000358548.4:p.Gln61His +input01_33 1 115256528 TT CA 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=5335782 mnp + input01 NRAS Q61L oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:375872 chr1:115256528-115256529 TT>CA missense_variant ENST00000369535 + MNV ENST00000369535:c.182_183delinsTG;p.(Gln61Leu);p.(Q61L) ENST00000369535.5:c.182_183delinsTG ENSP00000358548.4:p.Gln61Leu +input01_34 1 115256528 TT CC 1 115256528 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2316148 mnp + input01 NRAS Q61R oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:375873 chr1:115256528-115256529 TT>CC missense_variant ENST00000369535 + MNV ENST00000369535:c.182_183delinsGG;p.(Gln61Arg);p.(Q61R) ENST00000369535.5:c.182_183delinsGG ENSP00000358548.4:p.Gln61Arg +input01_35 1 115256529 T A 1 115256529 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9121210 snp + input01 NRAS Q61L oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar:375874 chr1:115256529 T>A missense_variant ENST00000369535 + SNV ENST00000369535:c.182A>T;p.(Gln61Leu);p.(Q61L) ENST00000369535.5:c.182A>T ENSP00000358548.4:p.Gln61Leu +input01_36 1 115256529 T C 1 115256529 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4545130 snp + input01 NRAS Q61R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar:13900 chr1:115256529 T>C missense_variant ENST00000369535 + SNV ENST00000369535:c.182A>G;p.(Gln61Arg);p.(Q61R) ENST00000369535.5:c.182A>G ENSP00000358548.4:p.Gln61Arg +input01_37 1 115256529 TG CT 1 115256529 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1042289 mnp + input01 NRAS Q61R oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:376220 chr1:115256529-115256530 TG>CT missense_variant ENST00000369535 + MNV ENST00000369535:c.181_182delinsAG;p.(Gln61Arg);p.(Q61R) ENST00000369535.5:c.181_182delinsAG ENSP00000358548.4:p.Gln61Arg +input01_38 1 115256529 T G 1 115256529 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7689375 snp + input01 NRAS Q61P oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:280409 chr1:115256529 T>G missense_variant ENST00000369535 + SNV ENST00000369535:c.182A>C;p.(Gln61Pro);p.(Q61P) ENST00000369535.5:c.182A>C ENSP00000358548.4:p.Gln61Pro +input01_39 1 115256530 G A 1 115256530 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4309104 snp + input01 NRAS Q61* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:376027 chr1:115256530 G>A stop_gained ENST00000369535 + SNV ENST00000369535:c.181C>T;p.(Gln61Ter);p.(Q61*) ENST00000369535.5:c.181C>T ENSP00000358548.4:p.Gln61Ter +input01_40 1 115256530 G C 1 115256530 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8335601 snp + input01 NRAS Q61E oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:375875 chr1:115256530 G>C missense_variant ENST00000369535 + SNV ENST00000369535:c.181C>G;p.(Gln61Glu);p.(Q61E) ENST00000369535.5:c.181C>G ENSP00000358548.4:p.Gln61Glu +input01_41 1 115256530 G T 1 115256530 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9881851 snp + input01 NRAS Q61K oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:73058 chr1:115256530 G>T missense_variant ENST00000369535 + SNV ENST00000369535:c.181C>A;p.(Gln61Lys);p.(Q61K) ENST00000369535.5:c.181C>A ENSP00000358548.4:p.Gln61Lys +input01_42 1 115258730 C T 1 115258730 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8212670 snp + input01 NRAS A18T oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar:376028 chr1:115258730 C>T missense_variant ENST00000369535 + SNV ENST00000369535:c.52G>A;p.(Ala18Thr);p.(A18T) ENST00000369535.5:c.52G>A ENSP00000358548.4:p.Ala18Thr +input01_43 1 115258744 C A 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6399676 snp + input01 NRAS G13V oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:375876 chr1:115258744 C>A missense_variant ENST00000369535 + SNV ENST00000369535:c.38G>T;p.(Gly13Val);p.(G13V) ENST00000369535.5:c.38G>T ENSP00000358548.4:p.Gly13Val +input01_44 1 115258744 C G 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2637206 snp + input01 NRAS G13A oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:375877 chr1:115258744 C>G missense_variant ENST00000369535 + SNV ENST00000369535:c.38G>C;p.(Gly13Ala);p.(G13A) ENST00000369535.5:c.38G>C ENSP00000358548.4:p.Gly13Ala +input01_45 1 115258744 C T 1 115258744 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4258223 snp + input01 NRAS G13D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:13901 chr1:115258744 C>T missense_variant ENST00000369535 + SNV ENST00000369535:c.38G>A;p.(Gly13Asp);p.(G13D) ENST00000369535.5:c.38G>A ENSP00000358548.4:p.Gly13Asp +input01_46 1 115258745 C A 1 115258745 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6055955 snp + input01 NRAS G13C oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:40471 chr1:115258745 C>A missense_variant ENST00000369535 + SNV ENST00000369535:c.37G>T;p.(Gly13Cys);p.(G13C) ENST00000369535.5:c.37G>T ENSP00000358548.4:p.Gly13Cys +input01_47 1 115258745 C G 1 115258745 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8033165 snp + input01 NRAS G13R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:13899 chr1:115258745 C>G missense_variant ENST00000369535 + SNV ENST00000369535:c.37G>C;p.(Gly13Arg);p.(G13R) ENST00000369535.5:c.37G>C ENSP00000358548.4:p.Gly13Arg +input01_48 1 115258745 C T 1 115258745 . . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9789023 snp + input01 NRAS G13S oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:376221 chr1:115258745 C>T missense_variant ENST00000369535 + SNV ENST00000369535:c.37G>A;p.(Gly13Ser);p.(G13S) ENST00000369535.5:c.37G>A ENSP00000358548.4:p.Gly13Ser +input01_49 1 115258747 C A 1 115258747 . . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5092183 snp + input01 NRAS G12V oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:40470 chr1:115258747 C>A missense_variant ENST00000369535 + SNV ENST00000369535:c.35G>T;p.(Gly12Val);p.(G12V) ENST00000369535.5:c.35G>T ENSP00000358548.4:p.Gly12Val +input01_50 1 115258747 C G 1 115258747 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9037188 snp + input01 NRAS G12A oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:219097 chr1:115258747 C>G missense_variant ENST00000369535 + SNV ENST00000369535:c.35G>C;p.(Gly12Ala);p.(G12A) ENST00000369535.5:c.35G>C ENSP00000358548.4:p.Gly12Ala +input01_51 1 115258747 C T 1 115258747 . . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9664066 snp + input01 NRAS G12D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:39648 chr1:115258747 C>T missense_variant ENST00000369535 + SNV ENST00000369535:c.35G>A;p.(Gly12Asp);p.(G12D) ENST00000369535.5:c.35G>A ENSP00000358548.4:p.Gly12Asp +input01_52 7 55221821 GC AA 7 55221821 . . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=3955283 mnp + input01 EGFR A289N oncogenic (predicted and annotated) driver (oncodriveMUT) clinvar:376397 chr7:55221821-55221822 GC>AA missense_variant ENST00000275493 + MNV ENST00000275493:c.865_866delinsAA;p.(Ala289Asn);p.(A289N) ENST00000275493.7:c.865_866delinsAA ENSP00000275493.2:p.Ala289Asn +input01_53 7 55221822 C A 7 55221822 . . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2574659 snp + input01 EGFR A289D oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) oncokb,clinvar:376396 chr7:55221822 C>A missense_variant ENST00000275493 + SNV ENST00000275493:c.866C>A;p.(Ala289Asp);p.(A289D) ENST00000275493.7:c.866C>A ENSP00000275493.2:p.Ala289Asp +input01_54 9 80409488 T C 9 80409488 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2553161 snp + input01 GNAQ Q209R oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:375956 chr9:80409488 T>C missense_variant ENST00000286548 + SNV ENST00000286548:c.626A>G;p.(Gln209Arg);p.(Q209R) ENST00000286548.9:c.626A>G ENSP00000286548.4:p.Gln209Arg +input01_55 9 80409488 TG AA 9 80409488 . . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6761480 mnp + input01 GNAQ Q209L oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:376311 chr9:80409488-80409489 TG>AA missense_variant ENST00000286548 + MNV ENST00000286548:c.625_626delinsTT;p.(Gln209Leu);p.(Q209L) ENST00000286548.9:c.625_626delinsTT ENSP00000286548.4:p.Gln209Leu +input01_56 10 43609078 TTCCCTGAGGAGGAGAAGTGCTTCTGC - 10 43609077 . . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8917004 indel + input01 RET FPEEEKCFC612-620- non-oncogenic passenger (oncodriveMUT) chr10:43609078-43609078 TTCCCTGAGGAGGAGAAGTGCTTCTGC>- inframe_deletion ENST00000355710 + DEL ENST00000355710:c.1834_1860del;p.(Phe612_Cys620del);p.(F612_C620del) ENST00000355710.8:c.1834_1860del ENSP00000347942.3:p.Phe612_Cys620del +input01_57 11 534289 C T 11 534289 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings:1crp.A&PDB-ENSP_mappings:1crq.A&PDB-ENSP_mappings:1crr.A&PDB-ENSP_mappings:1ctq.A&PDB-ENSP_mappings:1gnp.A&PDB-ENSP_mappings:1gnq.A&PDB-ENSP_mappings:1gnr.A&PDB-ENSP_mappings:1he8.B&PDB-ENSP_mappings:1iaq.A&PDB-ENSP_mappings:1iaq.B&PDB-ENSP_mappings:1iaq.C&PDB-ENSP_mappings:1ioz.A&PDB-ENSP_mappings:1jah.A&PDB-ENSP_mappings:1jai.A&PDB-ENSP_mappings:1k8r.A&PDB-ENSP_mappings:1lf0.A&PDB-ENSP_mappings:1lf5.A&PDB-ENSP_mappings:1lfd.B&PDB-ENSP_mappings:1lfd.D&PDB-ENSP_mappings:1nvu.Q&PDB-ENSP_mappings:1nvu.R&PDB-ENSP_mappings:1nvv.Q&PDB-ENSP_mappings:1nvv.R&PDB-ENSP_mappings:1nvw.Q&PDB-ENSP_mappings:1nvw.R&PDB-ENSP_mappings:1nvx.Q&PDB-ENSP_mappings:1nvx.R&PDB-ENSP_mappings:1p2s.A&PDB-ENSP_mappings:1p2t.A&PDB-ENSP_mappings:1p2u.A&PDB-ENSP_mappings:1p2v.A&PDB-ENSP_mappings:1plj.A&PDB-ENSP_mappings:1plk.A&PDB-ENSP_mappings:1pll.A&PDB-ENSP_mappings:1q21.A&PDB-ENSP_mappings:1qra.A&PDB-ENSP_mappings:1rvd.A&PDB-ENSP_mappings:1wq1.R&PDB-ENSP_mappings:1xcm.A&PDB-ENSP_mappings:1xd2.A&PDB-ENSP_mappings:1xd2.B&PDB-ENSP_mappings:1xj0.A&PDB-ENSP_mappings:1zvq.A&PDB-ENSP_mappings:1zw6.A&PDB-ENSP_mappings:221p.A&PDB-ENSP_mappings:2c5l.A&PDB-ENSP_mappings:2c5l.B&PDB-ENSP_mappings:2ce2.X&PDB-ENSP_mappings:2cl0.X&PDB-ENSP_mappings:2cl6.X&PDB-ENSP_mappings:2cl7.X&PDB-ENSP_mappings:2clc.X&PDB-ENSP_mappings:2cld.X&PDB-ENSP_mappings:2evw.X&PDB-ENSP_mappings:2lcf.A&PDB-ENSP_mappings:2lwi.A&PDB-ENSP_mappings:2n42.A&PDB-ENSP_mappings:2n46.A&PDB-ENSP_mappings:2q21.A&PDB-ENSP_mappings:2quz.A&PDB-ENSP_mappings:2rga.A&PDB-ENSP_mappings:2rgb.A&PDB-ENSP_mappings:2rgc.A&PDB-ENSP_mappings:2rgd.A&PDB-ENSP_mappings:2rge.A&PDB-ENSP_mappings:2rgg.A&PDB-ENSP_mappings:2uzi.R&PDB-ENSP_mappings:2vh5.R&PDB-ENSP_mappings:2x1v.A&Gene3D:3.40.50.300&PDB-ENSP_mappings:3ddc.A&PDB-ENSP_mappings:3i3s.R&PDB-ENSP_mappings:3k8y.A&PDB-ENSP_mappings:3k9l.A&PDB-ENSP_mappings:3k9l.B&PDB-ENSP_mappings:3k9l.C&PDB-ENSP_mappings:3k9n.A&PDB-ENSP_mappings:3kkm.A&PDB-ENSP_mappings:3kkn.A&PDB-ENSP_mappings:3kud.A&PDB-ENSP_mappings:3l8y.A&PDB-ENSP_mappings:3l8z.A&PDB-ENSP_mappings:3lbh.A&PDB-ENSP_mappings:3lbi.A&PDB-ENSP_mappings:3lbn.A&PDB-ENSP_mappings:3lo5.A&PDB-ENSP_mappings:3lo5.C&PDB-ENSP_mappings:3lo5.E&PDB-ENSP_mappings:3oiu.A&PDB-ENSP_mappings:3oiv.A&PDB-ENSP_mappings:3oiw.A&PDB-ENSP_mappings:3rry.A&PDB-ENSP_mappings:3rrz.A&PDB-ENSP_mappings:3rs0.A&PDB-ENSP_mappings:3rs2.A&PDB-ENSP_mappings:3rs3.A&PDB-ENSP_mappings:3rs4.A&PDB-ENSP_mappings:3rs5.A&PDB-ENSP_mappings:3rs7.A&PDB-ENSP_mappings:3rsl.A&PDB-ENSP_mappings:3rso.A&PDB-ENSP_mappings:3tgp.A&PDB-ENSP_mappings:421p.A&PDB-ENSP_mappings:4dlr.A&PDB-ENSP_mappings:4dls.A&PDB-ENSP_mappings:4dlt.A&PDB-ENSP_mappings:4dlu.A&PDB-ENSP_mappings:4dlv.A&PDB-ENSP_mappings:4dlw.A&PDB-ENSP_mappings:4dlx.A&PDB-ENSP_mappings:4dly.A&PDB-ENSP_mappings:4dlz.A&PDB-ENSP_mappings:4efl.A&PDB-ENSP_mappings:4efm.A&PDB-ENSP_mappings:4efn.A&PDB-ENSP_mappings:4g0n.A&PDB-ENSP_mappings:4g3x.A&PDB-ENSP_mappings:4k81.B&PDB-ENSP_mappings:4k81.D&PDB-ENSP_mappings:4k81.F&PDB-ENSP_mappings:4k81.H&PDB-ENSP_mappings:4l9s.A&PDB-ENSP_mappings:4l9w.A&PDB-ENSP_mappings:4nyi.Q&PDB-ENSP_mappings:4nyi.R&PDB-ENSP_mappings:4nyj.Q&PDB-ENSP_mappings:4nyj.R&PDB-ENSP_mappings:4nym.Q&PDB-ENSP_mappings:4nym.R&PDB-ENSP_mappings:4q21.A&PDB-ENSP_mappings:4rsg.A&PDB-ENSP_mappings:4uru.R&PDB-ENSP_mappings:4urv.R&PDB-ENSP_mappings:4urw.R&PDB-ENSP_mappings:4urx.R&PDB-ENSP_mappings:4ury.R&PDB-ENSP_mappings:4urz.R&PDB-ENSP_mappings:4us0.R&PDB-ENSP_mappings:4us1.R&PDB-ENSP_mappings:4us2.R&PDB-ENSP_mappings:4xvq.A&PDB-ENSP_mappings:4xvr.A&PDB-ENSP_mappings:521p.A&PDB-ENSP_mappings:5b2z.A&PDB-ENSP_mappings:5b30.A&PDB-ENSP_mappings:5e95.A&PDB-ENSP_mappings:5p21.A&PDB-ENSP_mappings:5vbe.A&PDB-ENSP_mappings:5vbz.A&PDB-ENSP_mappings:5vbz.B&PDB-ENSP_mappings:5vbz.C&PDB-ENSP_mappings:5wdo.A&PDB-ENSP_mappings:5wdp.A&PDB-ENSP_mappings:5wdq.A&PDB-ENSP_mappings:5wfo.Q&PDB-ENSP_mappings:5wfo.R&PDB-ENSP_mappings:5wfp.Q&PDB-ENSP_mappings:5wfp.R&PDB-ENSP_mappings:5wfq.Q&PDB-ENSP_mappings:5wfq.R&PDB-ENSP_mappings:5wfr.Q&PDB-ENSP_mappings:5wfr.R&PDB-ENSP_mappings:5wpl.A&PDB-ENSP_mappings:5wpl.D&PDB-ENSP_mappings:5wpl.G&PDB-ENSP_mappings:5wpl.J&PDB-ENSP_mappings:5x9s.A&PDB-ENSP_mappings:5zc6.A&PDB-ENSP_mappings:621p.A&PDB-ENSP_mappings:6amb.A&PDB-ENSP_mappings:6axg.B&PDB-ENSP_mappings:6axg.D&PDB-ENSP_mappings:6axg.F&PDB-ENSP_mappings:6axg.H&PDB-ENSP_mappings:6axg.J&PDB-ENSP_mappings:6axg.L&PDB-ENSP_mappings:6bvi.A&PDB-ENSP_mappings:6bvi.C&PDB-ENSP_mappings:6bvj.A&PDB-ENSP_mappings:6bvj.C&PDB-ENSP_mappings:6bvk.A&PDB-ENSP_mappings:6bvk.C&PDB-ENSP_mappings:6bvl.A&PDB-ENSP_mappings:6bvl.C&PDB-ENSP_mappings:6bvm.A&PDB-ENSP_mappings:6bvm.C&PDB-ENSP_mappings:6cuo.A&PDB-ENSP_mappings:6cuo.C&PDB-ENSP_mappings:6cup.A&PDB-ENSP_mappings:6cup.C&PDB-ENSP_mappings:6cur.A&PDB-ENSP_mappings:6cur.C&PDB-ENSP_mappings:6d55.A&PDB-ENSP_mappings:6d55.C&PDB-ENSP_mappings:6d56.A&PDB-ENSP_mappings:6d56.C&PDB-ENSP_mappings:6d59.A&PDB-ENSP_mappings:6d59.C&PDB-ENSP_mappings:6d5e.A&PDB-ENSP_mappings:6d5e.C&PDB-ENSP_mappings:6d5g.A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4929727 snp + input01 HRAS G12S oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:12602 chr11:534289 C>T missense_variant ENST00000451590 + SNV ENST00000451590:c.34G>A;p.(Gly12Ser);p.(G12S) ENST00000451590.5:c.34G>A ENSP00000407586.1:p.Gly12Ser +input01_58 11 8457665 A C 11 8457665 . . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5529836 snp + input01 STK33 F323L oncogenic (annotated) passenger (oncodriveMUT) clinvar:376702 chr11:8457665 A>C missense_variant ENST00000447869 + SNV ENST00000447869:c.969T>G;p.(Phe323Leu);p.(F323L) ENST00000447869.5:c.969T>G ENSP00000416750.1:p.Phe323Leu +input01_59 11 32417908 - ACCGTACA 11 32417908 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=2042601 indel + input01 WT1 -386-387CTX non-oncogenic passenger (oncodriveMUT) chr11:32417908-32417909 ->ACCGTACA frameshift_variant ENST00000452863 + INS ENST00000452863:c.1158_1159insTGTACGGT;p.(Ala387CysfsTer70);p.(A387Cfs*70) ENST00000452863.10:c.1158_1159insTGTACGGT ENSP00000415516.5:p.Ala387CysfsTer70 +input01_60 11 65830499 A C 11 65830499 . . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1606211 snp + input01 SF3B2 H666P oncogenic (annotated) passenger (oncodriveMUT) clinvar:376531 chr11:65830499 A>C missense_variant ENST00000322535 + SNV ENST00000322535:c.1997A>C;p.(His666Pro);p.(H666P) ENST00000322535.11:c.1997A>C ENSP00000318861.6:p.His666Pro +input01_61 11 65830884 A G 11 65830884 . . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=5806386 snp + input01 SF3B2 E700G oncogenic (annotated) passenger (oncodriveMUT) clinvar:376533 chr11:65830884 A>G missense_variant ENST00000322535 + SNV ENST00000322535:c.2099A>G;p.(Glu700Gly);p.(E700G) ENST00000322535.11:c.2099A>G ENSP00000318861.6:p.Glu700Gly +input01_62 11 67352689 A G 11 67352689 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=2296976 snp + input01 GSTP1 I105V non-oncogenic passenger (oncodriveMUT) chr11:67352689 A>G missense_variant ENST00000398606 + SNV ENST00000398606:c.313A>G;p.(Ile105Val);p.(I105V) ENST00000398606.10:c.313A>G ENSP00000381607.3:p.Ile105Val +input01_63 11 108218044 A C 11 108218044 . . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=1204346 snp + input01 ATM N2875H oncogenic (predicted) driver (boostDM: non-tissue-specific model) chr11:108218044 A>C missense_variant ENST00000278616 + SNV ENST00000278616:c.8623A>C;p.(Asn2875His);p.(N2875H) ENST00000278616.8:c.8623A>C ENSP00000278616.4:p.Asn2875His +input01_64 13 48955550 C T 13 48955550 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3144661 snp + input01 RB1 R556* oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,clinvar:13090 chr13:48955550 C>T stop_gained ENST00000267163 + SNV ENST00000267163:c.1666C>T;p.(Arg556Ter);p.(R556*) ENST00000267163.6:c.1666C>T ENSP00000267163.4:p.Arg556Ter +input01_65 13 49027168 C T 13 49027168 . . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=2600460 snp + input01 RB1 R579* oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,clinvar:126785 chr13:49027168 C>T stop_gained ENST00000267163 + SNV ENST00000267163:c.1735C>T;p.(Arg579Ter);p.(R579*) ENST00000267163.6:c.1735C>T ENSP00000267163.4:p.Arg579Ter +input01_66 13 49037877 G T 13 49037877 . . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=6055776 snp + input01 RB1 C706F oncogenic (annotated) passenger (boostDM) cgi,oncokb,clinvar:376330 chr13:49037877 G>T missense_variant ENST00000267163 + SNV ENST00000267163:c.2117G>T;p.(Cys706Phe);p.(C706F) ENST00000267163.6:c.2117G>T ENSP00000267163.4:p.Cys706Phe +input01_67 13 49039164 G T 13 49039164 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8931114 snp + input01 RB1 E748* oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,clinvar:13078 chr13:49039164 G>T stop_gained ENST00000267163 + SNV ENST00000267163:c.2242G>T;p.(Glu748Ter);p.(E748*) ENST00000267163.6:c.2242G>T ENSP00000267163.4:p.Glu748Ter +input01_69 14 105243048 G T 14 105243048 . . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=2111546 snp + input01 AKT1 Q79K oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,oncokb,clinvar:376168 chr14:105243048 G>T missense_variant ENST00000554581 + SNV ENST00000554581:c.235C>A;p.(Gln79Lys);p.(Q79K) ENST00000554581.5:c.235C>A ENSP00000451828.1:p.Gln79Lys +input01_71 14 105246551 C T 14 105246551 . . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=5808481 snp + input01 AKT1 E17K oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,oncokb,clinvar:13983 chr14:105246551 C>T missense_variant ENST00000554581 + SNV ENST00000554581:c.49G>A;p.(Glu17Lys);p.(E17K) ENST00000554581.5:c.49G>A ENSP00000451828.1:p.Glu17Lys +input01_72 16 3788617 C T 16 3788617 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=4837294 snp + input01 CREBBP R1446H oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:376387 chr16:3788617 C>T missense_variant ENST00000262367 + SNV ENST00000262367:c.4337G>A;p.(Arg1446His);p.(R1446H) ENST00000262367.10:c.4337G>A ENSP00000262367.5:p.Arg1446His +input01_73 16 3788618 G A 16 3788618 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=8568900 snp + input01 CREBBP R1446C oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:95047 chr16:3788618 G>A missense_variant ENST00000262367 + SNV ENST00000262367:c.4336C>T;p.(Arg1446Cys);p.(R1446C) ENST00000262367.10:c.4336C>T ENSP00000262367.5:p.Arg1446Cys +input01_74 16 3788618 G C 16 3788618 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=6432609 snp + input01 CREBBP R1446G oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:376388 chr16:3788618 G>C missense_variant ENST00000262367 + SNV ENST00000262367:c.4336C>G;p.(Arg1446Gly);p.(R1446G) ENST00000262367.10:c.4336C>G ENSP00000262367.5:p.Arg1446Gly +input01_75 16 69745145 G A 16 69745145 . . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=4545480 snp + input01 NQO1 P187S oncogenic (annotated) passenger (oncodriveMUT) clinvar:16809 chr16:69745145 G>A missense_variant ENST00000320623 + SNV ENST00000320623:c.559C>T;p.(Pro187Ser);p.(P187S) ENST00000320623.10:c.559C>T ENSP00000319788.5:p.Pro187Ser +input01_76 16 81946260 C T 16 81946260 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=9606588 snp + input01 PLCG2 R665W oncogenic (annotated) passenger (oncodriveMUT) cgi,oncokb,clinvar:376213 chr16:81946260 C>T missense_variant ENST00000564138 + SNV ENST00000564138:c.1993C>T;p.(Arg665Trp);p.(R665W) ENST00000564138.6:c.1993C>T ENSP00000482457.1:p.Arg665Trp +input01_77 16 81962183 A C 16 81962183 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=1348808 snp + input01 PLCG2 L845F oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:376214 chr16:81962183 A>C missense_variant ENST00000564138 + SNV ENST00000564138:c.2535A>C;p.(Leu845Phe);p.(L845F) ENST00000564138.6:c.2535A>C ENSP00000482457.1:p.Leu845Phe +input01_78 16 81962183 A T 16 81962183 . . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2029848 snp + input01 PLCG2 L845F oncogenic (annotated) passenger (oncodriveMUT) oncokb,clinvar:376215 chr16:81962183 A>T missense_variant ENST00000564138 + SNV ENST00000564138:c.2535A>T;p.(Leu845Phe);p.(L845F) ENST00000564138.6:c.2535A>T ENSP00000482457.1:p.Leu845Phe +input01_79 17 7577022 G A 17 7577022 . . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=3686245 snp + input01 TP53 R306* oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,clinvar:142144 chr17:7577022 G>A stop_gained ENST00000269305 + SNV ENST00000269305:c.916C>T;p.(Arg306Ter);p.(R306*) ENST00000269305.9:c.916C>T ENSP00000269305.4:p.Arg306Ter +input01_80 17 7577081 T A 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=7061584 snp + input01 TP53 E286V oncogenic (predicted and annotated) driver (boostDM: tissue specific model) clinvar:376592 chr17:7577081 T>A missense_variant ENST00000269305 + SNV ENST00000269305:c.857A>T;p.(Glu286Val);p.(E286V) ENST00000269305.9:c.857A>T ENSP00000269305.4:p.Glu286Val +input01_81 17 7577081 T C 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=2523161 snp + input01 TP53 E286G oncogenic (predicted and annotated) driver (boostDM: tissue specific model) clinvar:376590 chr17:7577081 T>C missense_variant ENST00000269305 + SNV ENST00000269305:c.857A>G;p.(Glu286Gly);p.(E286G) ENST00000269305.9:c.857A>G ENSP00000269305.4:p.Glu286Gly +input01_82 17 7577081 T G 17 7577081 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=1383811 snp + input01 TP53 E286A oncogenic (predicted and annotated) driver (boostDM: tissue specific model) cgi,clinvar:376593 chr17:7577081 T>G missense_variant ENST00000269305 + SNV ENST00000269305:c.857A>C;p.(Glu286Ala);p.(E286A) ENST00000269305.9:c.857A>C ENSP00000269305.4:p.Glu286Ala +input01_83 17 7577082 C G 17 7577082 . . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8675058 snp + input01 TP53 E286Q oncogenic (predicted and annotated) driver (boostDM: tissue specific model) clinvar:376591 chr17:7577082 C>G missense_variant ENST00000269305 + SNV ENST00000269305:c.856G>C;p.(Glu286Gln);p.(E286Q) ENST00000269305.9:c.856G>C ENSP00000269305.4:p.Glu286Gln +input01_84 18 48604787 G T 18 48604787 . . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=2054827 snp + input01 SMAD4 D537Y oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:376000 chr18:48604787 G>T missense_variant ENST00000342988 + SNV ENST00000342988:c.1609G>T;p.(Asp537Tyr);p.(D537Y) ENST00000342988.8:c.1609G>T ENSP00000341551.3:p.Asp537Tyr +input01_85 19 1207021 C T 19 1207021 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=5001857 snp + input01 STK11 Q37* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,clinvar:376334 chr19:1207021 C>T stop_gained ENST00000326873 + SNV ENST00000326873:c.109C>T;p.(Gln37Ter);p.(Q37*) ENST00000326873.12:c.109C>T ENSP00000324856.6:p.Gln37Ter +input01_86 20 57484421 G T 20 57484421 . . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1226805 snp + input01 GNAS R844L oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar:210045 chr20:57484421 G>T missense_variant ENST00000371100 + SNV ENST00000371100:c.2531G>T;p.(Arg844Leu);p.(R844L) ENST00000371100.8:c.2531G>T ENSP00000360141.3:p.Arg844Leu +input01_87 20 57484596 A T 20 57484596 . . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=7040058 snp + input01 GNAS Q870L oncogenic (annotated) passenger (oncodriveMUT) cgi,clinvar:210047 chr20:57484596 A>T missense_variant ENST00000371100 + SNV ENST00000371100:c.2609A>T;p.(Gln870Leu);p.(Q870L) ENST00000371100.8:c.2609A>T ENSP00000360141.3:p.Gln870Leu +input01_88 21 36231783 G A 21 36231783 . . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4689546 snp + input01 RUNX1 R201* oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:376018 chr21:36231783 G>A stop_gained ENST00000300305 + SNV ENST00000300305:c.601C>T;p.(Arg201Ter);p.(R201*) ENST00000300305.7:c.601C>T ENSP00000300305.3:p.Arg201Ter +input01_89 22 41565529 G T 22 41565529 . . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=5138149 snp + input01 EP300 D1399Y oncogenic (predicted and annotated) driver (boostDM: non-tissue-specific model) cgi,oncokb,clinvar:376402 chr22:41565529 G>T missense_variant ENST00000263253 + SNV ENST00000263253:c.4195G>T;p.(Asp1399Tyr);p.(D1399Y) ENST00000263253.9:c.4195G>T ENSP00000263253.7:p.Asp1399Tyr +input01_90 X 100611164 C G X 100611164 . . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5761324 snp + input01 BTK C515S oncogenic (annotated) passenger (oncodriveMUT) clinvar:376203 chrX:100611164 C>G missense_variant ENST00000621635 + SNV ENST00000621635:c.1544G>C;p.(Cys515Ser);p.(C515S) ENST00000621635.4:c.1544G>C ENSP00000483570.1:p.Cys515Ser diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/biomarkers.tsv b/example_files/cgi_test_out/cgi_test_out.cgi_results/biomarkers.tsv index 7ea6e28..51ed46c 100644 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/biomarkers.tsv +++ b/example_files/cgi_test_out/cgi_test_out.cgi_results/biomarkers.tsv @@ -1,26 +1,57 @@ Sample ID Alterations Biomarker Drugs Diseases Response Evidence Match Source BioM Resist. Tumor type -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Pralsetinib (Tyrosine kinase inhibitor) Thyroid medullary Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-pralsetinib-ret-altered-thyroid-cancers;ASCO 2020 (abstr 109) only gene THM -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Selpercatinib (RET kinase inhibitor) Thyroid medullary Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-lung-and-thyroid-cancers-ret-gene-mutations-or-fusions;ASCO 2020 (abstr 3594) only gene THM -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Cabozantinib (Kinase inhibitor ) Non-small cell lung Responsive C NO PMID:27825636 only gene NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (S786I,G719., L861Q) Osimertinib (EGFR inhibitor 3d gen) Non-small cell lung Responsive A NO NCCN Non-Small Cell Lung Cancer guidlines 2022 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,S768I,L861Q,G719.) Dacomitinib (EGFR inhibitor) Non-small cell lung Responsive A NO NCCN Non-Small Cell Lung Cancer guidlines 2022;FDA:https://www.fda.gov/drugs/drug-approvals-and-databases/fda-approves-dacomitinib-metastatic-non-small-cell-lung-cancer-0 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Gefitinib (EGFR inhibitor 1st gen) Non-small cell lung Resistant A NO PMID:26980062 only alteration type NSCLC -input01 ATM (N2875H) ATM oncogenic mutation Olaparib (PARP inhibitor) Prostate adenocarcinoma Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-olaparib-hrr-gene-mutated-metastatic-castration-resistant-prostate-cancer;PMID:32343890 complete PRAD -input01 KRAS wildtype KRAS wildtype Panitumumab (EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive A NO PMID: 31268481 complete 621.0 COREAD -input01 KRAS wildtype KRAS wildtype Cetuximab (EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive A NO PMID: 19339720 complete 246.0 COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 insertions Mobocertinib (EGFR inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-grants-accelerated-approval-mobocertinib-metastatic-non-small-cell-lung-cancer-egfr-exon-20 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 insertions Amivantamab (EGFR mAb inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-grants-accelerated-approval-amivantamab-vmjw-metastatic-non-small-cell-lung-cancer only alteration type NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Pralsetinib (Tyrosine kinase inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-pralsetinib-lung-cancer-ret-gene-fusions only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Selpercatinib (RET kinase inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-lung-and-thyroid-cancers-ret-gene-mutations-or-fusions only gene NSCLC +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (12,13,59,61,117,146) Cetuximab(EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant A NO PMID:24024839;PMID:20619739;PMID:23325582 complete COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2022/201292s017lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2022/201292s017lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L861Q,G719,S768I) Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2022/201292s017lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L861Q,G719,S768I) Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Gefitinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2021/206995s004lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Gefitinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2021/206995s004lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L861Q,G719,S768I) Gefitinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Osimertinib(EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2020/208065s021lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Osimertinib(EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2020/208065s021lbl.pdf only alteration type NSCLC +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (12,13,59,61,117,146) Panitumumab(EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant A NO FDA guidelines complete COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET (618,620,634,768,791,891,918,C634W,M918T) Vandetanib(Pan-TK inhibitor) Thyroid carcinoma Responsive A NO PMID:20065189;PMID:22025146 only alteration type THCA +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Pralsetinib(Tyrosine kinase inhibitor) Thyroid Responsive A NO FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-pralsetinib-ret-altered-thyroid-cancers;ASCO 2020 (abstr 109) only gene TH +input01 RET MUT* (FPEEEKCFC612-620-) RET oncogenic mutation Selpercatinib(RET kinase inhibitor) Thyroid medullary Responsive A NO FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-lung-and-thyroid-cancers-ret-gene-mutations-or-fusions;ASCO 2020 (abstr 3594) only alteration type THM +input01 EGFR (A289N), EGFR (A289D) EGFR (S786I,G719, L861Q) Osimertinib(EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Dacomitinib(EGFR inhibitor) Non-small cell lung Responsive A NO NCCN Non-Small Cell Lung Cancer guidlines 2022;FDA:https://www.fda.gov/drugs/drug-approvals-and-databases/fda-approves-dacomitinib-metastatic-non-small-cell-lung-cancer-0 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Gefitinib(EGFR inhibitor 1st gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 ATM (N2875H) ATM oncogenic mutation Olaparib(PARP inhibitor) Prostate adenocarcinoma Responsive A NO FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-olaparib-hrr-gene-mutated-metastatic-castration-resistant-prostate-cancer;PMID:32343890 complete PRAD +input01 KRAS wildtype KRAS wildtype Panitumumab(EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2021/125147s210lbl.pdf complete 65.0 COREAD +input01 KRAS wildtype KRAS wildtype Cetuximab(EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive A NO PMID: 19339720 complete 22.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 inframe insertions Mobocertinib(EGFR inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-grants-accelerated-approval-mobocertinib-metastatic-non-small-cell-lung-cancer-egfr-exon-20 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 inframe insertions Amivantamab(EGFR mAb inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-grants-accelerated-approval-amivantamab-vmjw-metastatic-non-small-cell-lung-cancer only alteration type NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Pralsetinib(Tyrosine kinase inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-pralsetinib-lung-cancer-ret-gene-fusions only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Selpercatinib(RET kinase inhibitor) Non-small cell lung Responsive A NO FDA:https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-locally-advanced-or-metastatic-ret-fusion-positive-non-small-cell-lung only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Selpercatinib(RET kinase inhibitor) Thyroid Responsive A NO FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-lung-and-thyroid-cancers-ret-gene-mutations-or-fusions;ASCO 2020 (abstr 3594) only gene TH +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Selpercatinib(RET kinase inhibitor) Solid tumors Responsive A YES FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-selpercatinib-locally-advanced-or-metastatic-ret-fusion-positive-solid-tumors only gene SOLID +input01 ATM (N2875H) ATM oncogenic mutation Talazoparib(PARP inhibitor);Enzalutamide(AR inhibitor) Prostate adenocarcinoma Responsive A NO FDA https://www.fda.gov/drugs/drug-approvals-and-databases/fda-approves-talazoparib-enzalutamide-hrr-gene-mutated-metastatic-castration-resistant-prostate complete PRAD +input01 BTK (C515S) BTK (C481S) Ibrutinib(BTK inhibitor) Chronic lymphocytic leukemia Resistant A NO PMID: 28418267 only alteration type CLL +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Trametinib(MEK inhibitor) Erdheim-Chester histiocytosis Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/histiocytic_neoplasms.pdf complete HISEC +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Cobimetinib(MEK inhibitor) Erdheim-Chester histiocytosis Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/histiocytic_neoplasms.pdf complete HISEC +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Trametinib(MEK inhibitor) Langerhans cell histiocytosis Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/histiocytic_neoplasms.pdf complete HISLC +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Cobimetinib(MEK inhibitor) Langerhans cell histiocytosis Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/histiocytic_neoplasms.pdf complete HISLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Erlotinib(EGFR inhibitor 1st gen);Ramucirumab(VEGFR2 antagonist) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2022/125477s042lbl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Erlotinib(EGFR inhibitor 1st gen);Ramucirumab(VEGFR2 antagonist) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2022/125477s042lbl.pdf only alteration type NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Cabozantinib(Kinase inhibitor ) Non-small cell lung Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 inframe insertions Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 inframe insertions Gefitinib(EGFR inhibitor 1st gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 inframe insertions Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Resistant A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR (S768I,L861Q,G719) Dacomitinib(EGFR inhibitor) Non-small cell lung Responsive A NO NCCN https://www.nccn.org/professionals/physician_gls/pdf/nscl.pdf only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Dacomitinib(EGFR inhibitor) Non-small cell lung Responsive A NO FDA: https://www.fda.gov/drugs/drug-approvals-and-databases/fda-approves-dacomitinib-metastatic-non-small-cell-lung-cancer-0 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 inframe deletions Osimertinib(EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO FDA https://www.accessdata.fda.gov/drugsatfda_docs/label/2020/208065s021lbl.pdf only alteration type NSCLC input01 AKT1 (Q79K), AKT1 (E17K) AKT1 (Q79K,E17K) BRAF inhibitors Cutaneous melanoma Resistant C NO PMID:24265152 complete CM input01 AKT1 (E17K) AKT1 (E17K) AKT inhibitors Any cancer type Responsive D YES PMID:21464312;PMID:17611497;PMID:23134728; ENA 2015 (abstr B109) complete CANCER input01 AKT1 (E17K) AKT1 (E17K) allosteric AKT inhibitors Any cancer type Responsive C YES ENA 2015 (abstract B109);PMID:28489509 complete CANCER input01 AKT1 (E17K) AKT1 (E17K) non-allosteric AKT inhibitors Any cancer type Responsive C YES ENA 2015 (abstract B109);PMID:28489509 complete CANCER input01 AKT1 (E17K) AKT1 (E17K) PI3K pathway inhibitors Head an neck squamous Responsive C NO PMID:26763254 complete HNSC -input01 AKT1 (Q79K), AKT1 (E17K) AKT1 (H238Y) Everolimus (MTOR inhibitor) Fibrous histiocytoma Responsive C NO ASCO 2015 (abstr 11010) only alteration type FH -input01 AKT1 (E17K) AKT1 (E17K) Tensirolimus (MTOR inhibitor) Endometrium Responsive C NO PMID:27016228 complete ED +input01 AKT1 (Q79K), AKT1 (E17K) AKT1 (H238Y) Everolimus(MTOR inhibitor) Fibrous histiocytoma Responsive C NO ASCO 2015 (abstr 11010) only alteration type FH +input01 AKT1 (E17K) AKT1 (E17K) Tensirolimus(MTOR inhibitor) Endometrium Responsive C NO PMID:27016228 complete ED input01 EGFR (A289N), EGFR (A289D) EGFR inframe deletion (30-336) EGFR inhibitor 1st gens Glioma No Responsive C NO PMID:19204207 only alteration type G -input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 insertions EGFR inhibitor 1st gens Lung Resistant B NO PMID:21764376;PMID:26773740;PMID:26051236 only alteration type L input01 EGFR (A289N), EGFR (A289D) EGFR amplification EGFR inhibitor 1st gens Glioma No Responsive C NO PMID:16282176;PMID:16278407 only gene G input01 EGFR (A289N), EGFR (A289D) EGFR (D761Y) EGFR inhibitor 1st gens Non-small cell lung Resistant C NO PMID:19680293 only alteration type NSCLC input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) EGFR inhibitor 1st gens Non-small cell lung Resistant B NO PMID:19680293 only alteration type NSCLC @@ -35,15 +66,14 @@ input01 ATM (N2875H) ATM oncogenic mutation DNA-PKc inhibitors Lymphoma Responsi input01 ATM (N2875H) ATM deletion DNA-PKc inhibitors Lymphoma Responsive D NO PMID:23761041 only gene LY input01 ATM (N2875H) ATM oncogenic mutation PARP inhibitors Stomach Responsive C NO ENA 2014 (abstr 8LBA) complete ST input01 ATM (N2875H) ATM deletion PARP inhibitors Stomach Responsive C NO ENA 2014 (abstr 8LBA) only gene ST -input01 ATM (N2875H) ATM biallelic inactivation AZD6738 (ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html only alteration type BCL -input01 ATM (N2875H) ATM oncogenic mutation Cisplatin (Chemotherapy) Bladder Responsive C NO PMID:26238431 complete BLCA -input01 ATM (N2875H) ATM deletion Cisplatin (Chemotherapy) Bladder Responsive C NO PMID:26238431 only gene BLCA -input01 ATM (N2875H) ATM oncogenic mutation Olaparib (PARP inhibitor) Stomach Responsive C NO ENA 2014 (abstr 8LBA) complete ST -input01 ATM (N2875H) ATM oncogenic mutation Temozolomide (Chemotherapy) Glioma Responsive D NO PMID:23960094 complete G +input01 ATM (N2875H) ATM biallelic inactivation AZD6738(ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html only alteration type BCL +input01 ATM (N2875H) ATM oncogenic mutation Cisplatin(Chemotherapy) Bladder Responsive C NO PMID:26238431 complete BLCA +input01 ATM (N2875H) ATM deletion Cisplatin(Chemotherapy) Bladder Responsive C NO PMID:26238431 only gene BLCA +input01 ATM (N2875H) ATM oncogenic mutation Olaparib(PARP inhibitor) Stomach Responsive C NO ENA 2014 (abstr 8LBA) complete ST +input01 ATM (N2875H) ATM oncogenic mutation Temozolomide(Chemotherapy) Glioma Responsive D NO PMID:23960094 complete G input01 JAK1 (V658F), JAK1 (S646F), JAK1 (A634D) JAK1 oncogenic mutation PD1 inhibitors Colorectal adenocarcinoma Resistant C NO PMID:27903500 complete COREAD input01 JAK1 (V658F), JAK1 (S646F), JAK1 (A634D) JAK1 oncogenic mutation PD1 inhibitors Cutaneous melanoma Resistant C NO PMID:27433843 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (12,13,59,61,117,146) Cetuximab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant A NO PMID:24024839;PMID:20619739;PMID:23325582 complete COREAD -input01 CSF3R (T618I), CSF3R (T615A) CSF3R frameshift variant (D771),frameshift variant (S783) Dasatinib (BCR-ABL inhibitor 2nd gen) Atypical chronic myeloid leukemia Responsive D NO PMID:23656643 only alteration type ACML +input01 CSF3R (T618I), CSF3R (T615A) CSF3R frameshift variant (D771),frameshift variant (S783) Dasatinib(BCR-ABL inhibitor 2nd gen) Atypical chronic myeloid leukemia Responsive D NO PMID:23656643 only alteration type ACML input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) EGFR inhibitor 3rd gens Lung Responsive C NO ASCO 2014 (abstr 8009);ENA 2014 (abstr 10LBA);ENA 2014 (abstr 9LBA);ASCO 2015 (abstr 8001) only alteration type L input01 EGFR (A289N), EGFR (A289D) EGFR amplification EGFR inhibitors Head an neck squamous Responsive C NO PMID:26763254 only gene HNSC input01 EGFR (A289N), EGFR (A289D) EGFR amplification EGFR mAb inhibitors Colorectal adenocarcinoma Responsive B NO PMID:18794099;PMID:17664472 only gene COREAD @@ -53,94 +83,77 @@ input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions HSP90 inhibitors Lung input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 insertions HSP90 inhibitors Lung Responsive C NO ASCO 2014 (abstr 8015) only alteration type L input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861R) HSP90 inhibitors Lung Responsive C NO ESMO 2012 (abstr 4380) only alteration type L input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) HSP90 inhibitors Lung Responsive C NO ESMO 2012 (abstr 4380) only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions MEK inhibitor (alone or in combination)s Lung Responsive D NO PMID:23102728 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861R,T790M) MEK inhibitor (alone or in combination)s Lung Responsive D NO PMID:23102728 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions MEK inhibitor(alone or in combination)s Lung Responsive D NO PMID:23102728 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861R,T790M) MEK inhibitor(alone or in combination)s Lung Responsive D NO PMID:23102728 only alteration type L input01 EGFR (A289N), EGFR (A289D) EGFR (S492R) novel EGFR mAb inhibitors Colorectal adenocarcinoma Responsive C NO PMID:25962717 only alteration type COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) EGFR inhibitor 3rd gens (Rociletinib,HM61713,etc) Non-small cell lung Responsive B NO NCT02322281 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 deletions Afatinib (ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Afatinib (ERBB2 inhibitor&EGFR inhibitor 2nd gen) Lung Responsive B NO PMID:22753918;PMID:25589191 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861Q,L861R) Afatinib (ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861Q,L861R) Afatinib (ERBB2 inhibitor&EGFR inhibitor 2nd gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Afatinib + Cetuximab (ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO ESMO 2012 (abstr 1289) only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861R) Afatinib + Cetuximab (ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO ESMO 2012 (abstr 1289) only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib + Cetuximab (ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO PMID:25074459 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib + Nimotuzumab (ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO PMID:26667485 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR overexpression Cetuximab (EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive A NO FDA only gene 246.0 COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR (P546S) Cetuximab (EGFR mAb inhibitor) Head an neck Responsive C NO PMID:23578570 only alteration type HNC -input01 EGFR (A289N), EGFR (A289D) EGFR (P753S) Cetuximab + Sirolimus (EGFR mAb inhibitor + MTOR inhibitor) Head an neck Responsive C NO PMID:24934779 only alteration type HNC -input01 EGFR (A289N), EGFR (A289D) EGFR-RAD51 fusion Erlotinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive C NO PMID:27102076 only gene NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR-RAD51 fusion Erlotinib (EGFR inhibitor 1st gen) Lung Responsive C NO PMID:27102076 only gene L -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 deletions Erlotinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Erlotinib (EGFR inhibitor 1st gen) Lung Responsive C NO PMID:22190593 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR inframe insertion (769-770) Erlotinib (EGFR inhibitor 1st gen) Lung Responsive C NO PMID:26773740;PMID:23328547 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (A289V,R108K,G598V,T263P) Erlotinib (EGFR inhibitor 1st gen) Glioma Responsive D NO PMID:17177598 only alteration type G +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) EGFR inhibitor 3rd gens(Rociletinib,HM61713,etc) Non-small cell lung Responsive B NO NCT02322281 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Afatinib(ERBB2 inhibitor&EGFR inhibitor 2nd gen) Lung Responsive B NO PMID:22753918;PMID:25589191 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Afatinib + Cetuximab(ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO ESMO 2012 (abstr 1289) only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861R) Afatinib + Cetuximab(ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO ESMO 2012 (abstr 1289) only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib + Cetuximab(ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO PMID:25074459 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib + Nimotuzumab(ERBB2 inhibitor&EGFR inhibitor 2nd gen + EGFR mAb inhibitor) Lung Responsive C NO PMID:26667485 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (P546S) Cetuximab(EGFR mAb inhibitor) Head an neck Responsive C NO PMID:23578570 only alteration type HNC +input01 EGFR (A289N), EGFR (A289D) EGFR (P753S) Cetuximab + Sirolimus(EGFR mAb inhibitor + MTOR inhibitor) Head an neck Responsive C NO PMID:24934779 only alteration type HNC +input01 EGFR (A289N), EGFR (A289D) EGFR-RAD51 fusion Erlotinib(EGFR inhibitor 1st gen) Non-small cell lung Responsive C NO PMID:27102076 only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR-RAD51 fusion Erlotinib(EGFR inhibitor 1st gen) Lung Responsive C NO PMID:27102076 only gene L +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 insertions Erlotinib(EGFR inhibitor 1st gen) Lung Responsive C NO PMID:22190593 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR inframe insertion (769-770) Erlotinib(EGFR inhibitor 1st gen) Lung Responsive C NO PMID:26773740;PMID:23328547 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (A289V,R108K,G598V,T263P) Erlotinib(EGFR inhibitor 1st gen) Glioma Responsive D NO PMID:17177598 only alteration type G input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS (Q61) BRAF inhibitors Cutaneous melanoma Resistant C NO PMID:23569304;PMID:24265153 complete CM -input01 EGFR (A289N), EGFR (A289D) EGFR (K757R,E746G) Erlotinib (EGFR inhibitor 1st gen) Lung Responsive C NO PMID:26773740 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Erlotinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861,G719,S768I) Erlotinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO NCCN only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 deletions Gefitinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR amplification Gefitinib (EGFR inhibitor 1st gen) Endometrium Responsive B NO PMID:24950987 only gene ED -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R,L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861Q,L861R) Gefitinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (L861Q,G719A,G719S,G719C,G719D,L747S,S768I,L861P,L861Q,L861R) Gefitinib (EGFR inhibitor 1st gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (E690K) Lapatinib (ERBB2 inhibitor) Endometrium Responsive C NO PMID:22885469 only alteration type ED -input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 deletions Osimertinib (EGFR inhibitor 3rd gen) Lung Responsive C NO NCT02465060 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR exon 20 insertions Osimertinib (EGFR inhibitor 3rd gen) Lung Responsive A NO PMID:26515464 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L858R) Osimertinib (EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO NCCN Non-Small Cell Lung Cancer 2022;PMID:30659024 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Osimertinib (EGFR inhibitor 3rd gen) Non-small cell lung Responsive A NO FDA only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR (S492R) Panitumumab (EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive C NO PMID:22270724 only alteration type 621.0 COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR inframe deletion (6-273) Rindopepimut (Vaccine) Glioblastoma Responsive B NO NCT01480479 only alteration type GB +input01 EGFR (A289N), EGFR (A289D) EGFR (K757R,E746G) Erlotinib(EGFR inhibitor 1st gen) Lung Responsive C NO PMID:26773740 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR amplification Gefitinib(EGFR inhibitor 1st gen) Endometrium Responsive B NO PMID:24950987 only gene ED +input01 EGFR (A289N), EGFR (A289D) EGFR (E690K) Lapatinib(ERBB2 inhibitor) Endometrium Responsive C NO PMID:22885469 only alteration type ED +input01 EGFR (A289N), EGFR (A289D) EGFR exon 19 deletions Osimertinib(EGFR inhibitor 3rd gen) Lung Responsive C NO NCT02465060 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (S492R) Panitumumab(EGFR mAb inhibitor) Colorectal adenocarcinoma Responsive C NO PMID:22270724 only alteration type 65.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR inframe deletion (6-273) Rindopepimut(Vaccine) Glioblastoma Responsive B NO NCT01480479 only alteration type GB input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) MTOR inhibitors Lung squamous cell Responsive D NO PMID:20360610 complete LUSC input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) MTOR inhibitors Lung squamous cell Responsive D NO PMID:20360610 complete LUSC -input01 EPHA2 (R721Q), EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 amplification Dasatinib (BCR-ABL inhibitor 2nd gen) Any cancer type Responsive D YES PMID:18047674;PMID:19010823;PMID:19861960 only gene CANCER -input01 EPHA2 (R721Q), EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 amplification Dasatinib (BCR-ABL inhibitor 2nd gen) Any cancer type Responsive D YES PMID:18047674;PMID:19010823;PMID:19861960 only gene CANCER -input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) Dasatinib (BCR-ABL inhibitor 2nd gen) Lung squamous cell Responsive D NO PMID:20360610 complete LUSC -input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) Dasatinib (BCR-ABL inhibitor 2nd gen) Lung squamous cell Responsive D NO PMID:20360610 complete LUSC +input01 EPHA2 (R721Q), EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 amplification Dasatinib(BCR-ABL inhibitor 2nd gen) Any cancer type Responsive D YES PMID:18047674;PMID:19010823;PMID:19861960 only gene CANCER +input01 EPHA2 (R721Q), EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 amplification Dasatinib(BCR-ABL inhibitor 2nd gen) Any cancer type Responsive D YES PMID:18047674;PMID:19010823;PMID:19861960 only gene CANCER +input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) Dasatinib(BCR-ABL inhibitor 2nd gen) Lung squamous cell Responsive D NO PMID:20360610 complete LUSC +input01 EPHA2 (G391R), EPHA2 MUT* (G391R) EPHA2 (G391R) Dasatinib(BCR-ABL inhibitor 2nd gen) Lung squamous cell Responsive D NO PMID:20360610 complete LUSC input01 STK11 (Q37*) STK11 oncogenic mutation BET inhibitors Lung Resistant D NO PMID:23129625;PMID:24045185 complete L input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation MDM2 inhibitors Liposarcoma Resistant C NO PMID:23084521;ASCO 2015 (abstr 10564) complete LIP -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Abemaciclib (CDK4/CDK6 inhibitor) Breast adenocarcinoma Resistant C YES PMID:27217383 complete BRCA -input01 EGFR (A289N), EGFR (A289D) EGFR overexpression Panitumumab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant A NO FDA guidelines only gene COREAD +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Abemaciclib(CDK4/CDK6 inhibitor) Breast adenocarcinoma Resistant C YES PMID:27217383 complete BRCA input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ (Q209) HDAC inhibitors Cutaneous melanoma Responsive D NO NCT01587352 complete CM input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ (Q209) PI3K pathway inhibitor + MEK inhibitors Cutaneous melanoma Responsive D NO PMID:22733540;PMID:22808163 complete CM input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ (Q209) PKC inhibitors Cutaneous melanoma Responsive D NO PMID:22653968;PMID:22253748 complete CM -input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ (Q209) Selumetinib (MEK inhibitor) Cutaneous melanoma Responsive C NO ASCO 2013 (abstr CRA9003) complete CM +input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ (Q209) Selumetinib(MEK inhibitor) Cutaneous melanoma Responsive C NO ASCO 2013 (abstr CRA9003) complete CM input01 GNAS (R844L), GNAS (Q870L) GNAS (R201) JAK inhibitors Any cancer type Responsive D YES PMID:21835143 only alteration type CANCER input01 HRAS (G12S) HRAS oncogenic mutation MEK inhibitor +/- MTOR inhibitors Acute myeloid leukemia Responsive D NO PMID:22399013;PMID:22507781 complete AML input01 HRAS (G12S) HRAS oncogenic mutation MTOR inhibitors Cervix squamous cell Responsive D NO PMID:22345164 complete CESC input01 HRAS (G12S) HRAS oncogenic mutation PI3K pathway inhibitor + MEK inhibitors Cervix Responsive D NO PMID:15950068 complete CER -input01 HRAS (G12S) HRAS oncogenic mutation Tipifarnib (Farnesyltransferase inhibitor) Any cancer type Responsive C YES NCT02383927 complete CANCER -input01 HRAS (G12S) HRAS oncogenic mutation Tipifarnib (Farnesyltransferase inhibitor) Any cancer type Responsive C YES NCT02383927 complete CANCER -input01 EGFR (A289N), EGFR (A289D) EGFR (S464L,G465R,I491M) Cetuximab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant D NO PMID:25623215 only alteration type COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR (S492R,G465R,R451C,K467T) Cetuximab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant C NO PMID:22270724;PMID:26059438;PMID:25623215;PMID:22270724;PMID:26888827 only alteration type COREAD -input01 JAK1 (S646F) JAK1 (S646F;R683) Ruxolitinib (JAK inhibitor) Acute lymphoblastic leukemia Responsive D NO PMID:22955920;PMID:18805579 complete ALL -input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (12,13,59,61,117,146) Panitumumab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant A NO FDA guidelines complete COREAD -input01 KIT wildtype KIT wildtype Dasatinib (BCR-ABL inhibitor 2nd gen) Gastrointestinal stromal Responsive D NO PMID:16397263 complete GIST -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Cisplatin (Chemotherapy) Female germ cell tumor, Male germ cell tumor Resistant C NO PMID:27646943 complete FGCT, MGCT -input01 KIT wildtype KIT wildtype Sorafenib (Pan-TK inhibitor) Gastrointestinal stromal Responsive C NO ASCO 2011 (abstr 10009) complete GIST -input01 KIT wildtype KIT wildtype Sunitinib (Pan-TK inhibitor) Gastrointestinal stromal Responsive B NO PMID:18955458 complete GIST -input01 EGFR (A289N), EGFR (A289D) EGFR amplification Erlotinib (EGFR inhibitor 1st gen) Lung No Responsive C NO ASCO2015(abstre19028) only gene L -input01 EGFR (A289N), EGFR (A289D) EGFR (S720) Erlotinib (EGFR inhibitor 1st gen) Lung No Responsive C NO PMID:26773740 only alteration type L -input01 MTOR (F2108L) MTOR (F2108L) Everolimus (MTOR inhibitor) Thyroid carcinoma Resistant C NO PMID:25295501 complete THCA -input01 EGFR (A289N), EGFR (A289D) EGFR inframe deletion (L747),inframe insertion (P753PS) Gefitinib (EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259 only alteration type HNC -input01 EGFR (A289N), EGFR (A289D) EGFR amplification Gefitinib (EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259;PMID:22261807 only gene HNC -input01 EGFR (A289N), EGFR (A289D) EGFR (V843I) Gefitinib (EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259 only alteration type HNC -input01 BTK MUT* (C515S) BTK (C481) Ibrutinib (BTK inhibitor) Mantle cell lymphoma Resistant C NO PMID:25082755 only alteration type MCL -input01 BTK MUT* (C515S) BTK (C481S) Ibrutinib (BTK inhibitor) Chronic lymphocytic leukemia Resistant C NO PMID:24869598;PMID:27199251 only alteration type CLL -input01 PLCG2 (R665W), PLCG2 (L845F), PLCG2 (L845F) PLCG2 (R665W,L845F) Ibrutinib (BTK inhibitor) Chronic lymphocytic leukemia Resistant C NO PMID:24869598 complete CLL -input01 KIT wildtype KIT wildtype Imatinib (BCR-ABL inhibitor 1st gen&KIT inhibitor) Gastrointestinal stromal Resistant B NO PMID:18955458 complete GIST +input01 HRAS (G12S) HRAS oncogenic mutation Tipifarnib(Farnesyltransferase inhibitor) Any cancer type Responsive C YES NCT02383927 complete CANCER +input01 HRAS (G12S) HRAS oncogenic mutation Tipifarnib(Farnesyltransferase inhibitor) Any cancer type Responsive C YES NCT02383927 complete CANCER +input01 EGFR (A289N), EGFR (A289D) EGFR (S464L,G465R,I491M) Cetuximab(EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant D NO PMID:25623215 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR (S492R,G465R,R451C,K467T) Cetuximab(EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant C NO PMID:22270724;PMID:26059438;PMID:25623215;PMID:22270724;PMID:26888827 only alteration type COREAD +input01 JAK1 (S646F) JAK1 (S646F;R683) Ruxolitinib(JAK inhibitor) Acute lymphoblastic leukemia Responsive D NO PMID:22955920;PMID:18805579 complete ALL +input01 KIT wildtype KIT wildtype Dasatinib(BCR-ABL inhibitor 2nd gen) Gastrointestinal stromal Responsive D NO PMID:16397263 complete GIST +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Cisplatin(Chemotherapy) Female germ cell tumor, Male germ cell tumor Resistant C NO PMID:27646943 complete FGCT, MGCT +input01 KIT wildtype KIT wildtype Sorafenib(Pan-TK inhibitor) Gastrointestinal stromal Responsive C NO ASCO 2011 (abstr 10009) complete GIST +input01 KIT wildtype KIT wildtype Sunitinib(Pan-TK inhibitor) Gastrointestinal stromal Responsive B NO PMID:18955458 complete GIST +input01 EGFR (A289N), EGFR (A289D) EGFR amplification Erlotinib(EGFR inhibitor 1st gen) Lung No Responsive C NO ASCO2015(abstre19028) only gene L +input01 EGFR (A289N), EGFR (A289D) EGFR (S720) Erlotinib(EGFR inhibitor 1st gen) Lung No Responsive C NO PMID:26773740 only alteration type L +input01 MTOR (F2108L) MTOR (F2108L) Everolimus(MTOR inhibitor) Thyroid carcinoma Resistant C NO PMID:25295501 complete THCA +input01 EGFR (A289N), EGFR (A289D) EGFR inframe deletion (L747),inframe insertion (P753PS) Gefitinib(EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259 only alteration type HNC +input01 EGFR (A289N), EGFR (A289D) EGFR amplification Gefitinib(EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259;PMID:22261807 only gene HNC +input01 EGFR (A289N), EGFR (A289D) EGFR (V843I) Gefitinib(EGFR inhibitor 1st gen) Head an neck No Responsive C NO PMID:21274259 only alteration type HNC +input01 BTK (C515S) BTK (C481) Ibrutinib(BTK inhibitor) Mantle cell lymphoma Resistant C NO PMID:25082755 only alteration type MCL +input01 PLCG2 (R665W), PLCG2 (L845F), PLCG2 (L845F) PLCG2 (R665W,L845F) Ibrutinib(BTK inhibitor) Chronic lymphocytic leukemia Resistant C NO PMID:24869598 complete CLL +input01 KIT wildtype KIT wildtype Imatinib(BCR-ABL inhibitor 1st gen&KIT inhibitor) Gastrointestinal stromal Resistant B NO PMID:18955458 complete GIST input01 MPL (S505C), MPL (S505N), MPL (W515L) MPL (W515F) JAK inhibitors Myelodisplasic proliferative syndrome Responsive D NO PMID:16834459 only alteration type MDPS input01 MTOR (F2108L) MTOR (F2108L) MTOR kinase inhibitors Any cancer type Responsive D YES PMID:25295501 complete CANCER -input01 MTOR (E2419K), MTOR (E2014K) MTOR (E2014K,E2419K,N1421D) Everolimus (MTOR inhibitor) Bladder Responsive C NO PMID:24625776 complete BLCA -input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (I1973F) Everolimus (MTOR inhibitor) Angiosarcoma, Renal Responsive C NO ASCO 2015 (abstr 11010);PMID:26859683 only alteration type AS, R -input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (K1771R) Everolimus (MTOR inhibitor) Stomach, Adrenal gland Responsive C NO ASCO 2015 (abstr 11010);PMID:26859683 only alteration type ST, AG -input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (N1421D) Everolimus (MTOR inhibitor) Stomach Responsive C NO PMID:26859683 only alteration type ST -input01 MTOR (Q2223K) MTOR (Q2223K) Everolimus (MTOR inhibitor) Renal Responsive C NO PMID:24622468 complete R -input01 MTOR (R2505P), MTOR (S2215Y), MTOR (L1460P) MTOR (L1460P,S2215Y,R2505P) Sirolimus (MTOR inhibitor) Any cancer type Responsive D YES PMID:24631838 complete CANCER -input01 PDGFRA wildtype PDGFRA wildtype Imatinib (BCR-ABL inhibitor 1st gen&KIT inhibitor) Gastrointestinal stromal Resistant B NO PMID:14645423;PMID:18955458 complete GIST -input01 EGFR (A289N), EGFR (A289D) EGFR (C797S) Osimertinib (EGFR inhibitor 3rd gen) Lung Resistant C NO PMID:25939061 only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L718) Osimertinib (EGFR inhibitor 3rd gen) Lung Resistant C NO ASCO 2017 (abstr 2572) only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (L792) Osimertinib (EGFR inhibitor 3rd gen) Lung Resistant C NO ASCO 2017 (abstr 2572) only alteration type L -input01 EGFR (A289N), EGFR (A289D) EGFR (G465R) Panitumumab (EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant C NO PMID:26059438 only alteration type COREAD -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib (ERBB2 inhibitor&EGFR inhibitor 2nd gen) Lung Resistant A NO NCCN only alteration type L +input01 MTOR (E2419K), MTOR (E2014K) MTOR (E2014K,E2419K,N1421D) Everolimus(MTOR inhibitor) Bladder Responsive C NO PMID:24625776 complete BLCA +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (I1973F) Everolimus(MTOR inhibitor) Angiosarcoma, Renal Responsive C NO ASCO 2015 (abstr 11010);PMID:26859683 only alteration type AS, R +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (K1771R) Everolimus(MTOR inhibitor) Stomach, Adrenal gland Responsive C NO ASCO 2015 (abstr 11010);PMID:26859683 only alteration type ST, AG +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR (N1421D) Everolimus(MTOR inhibitor) Stomach Responsive C NO PMID:26859683 only alteration type ST +input01 MTOR (Q2223K) MTOR (Q2223K) Everolimus(MTOR inhibitor) Renal Responsive C NO PMID:24622468 complete R +input01 MTOR (R2505P), MTOR (S2215Y), MTOR (L1460P) MTOR (L1460P,S2215Y,R2505P) Sirolimus(MTOR inhibitor) Any cancer type Responsive D YES PMID:24631838 complete 805.0 CANCER +input01 PDGFRA wildtype PDGFRA wildtype Imatinib(BCR-ABL inhibitor 1st gen&KIT inhibitor) Gastrointestinal stromal Resistant B NO PMID:14645423;PMID:18955458 complete GIST +input01 EGFR (A289N), EGFR (A289D) EGFR (C797S) Osimertinib(EGFR inhibitor 3rd gen) Lung Resistant C NO PMID:25939061 only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (L718) Osimertinib(EGFR inhibitor 3rd gen) Lung Resistant C NO ASCO 2017 (abstr 2572) only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (L792) Osimertinib(EGFR inhibitor 3rd gen) Lung Resistant C NO ASCO 2017 (abstr 2572) only alteration type L +input01 EGFR (A289N), EGFR (A289D) EGFR (G465R) Panitumumab(EGFR mAb inhibitor) Colorectal adenocarcinoma Resistant C NO PMID:26059438 only alteration type COREAD input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation CDK4/6 inhibitor + MEK inhibitors Cutaneous melanoma Responsive C NO PMID:26658964;NCT01781572;NCT02065063;NCT02022982;ASCO 2014 (abstr 9009) complete CM input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (G12C) ERK inhibitors Any cancer type Responsive D YES PMID:23614898 only alteration type CANCER input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation ERK inhibitors Cutaneous melanoma Responsive C NO ASCO 2017 (abstr 2508) complete CM @@ -150,55 +163,52 @@ input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS (Q61) MEK inhibitors Cutaneous melanoma Responsive B NO PMID:23414587,ASCO 2016 (abstr 9500) complete CM input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Pan-RAF inhibitors Cutaneous melanoma Responsive C NO ESMO 2015 (abstract 300);AACR 2017 (abstr CT002) complete CM input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation PI3K pathway inhibitor + MEK inhibitors Myeloma Responsive D NO PMID:22985491 complete MYMA -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Sorafenib + MEK inhibitor (Pan-TK inhibitor + MEK inhibitor) Hepatic carcinoma Responsive C NO PMID:25294897 complete HC -input01 PDGFRA wildtype PDGFRA wildtype Dasatinib (BCR-ABL inhibitor 2nd gen) Gastrointestinal stromal Responsive D NO PMID:16397263 complete GIST -input01 RET MUT* (FPEEEKCFC612-620-) RET (I788N) Ponatinib (BCR-ABL inhibitor 3rd gen&Pan-TK inhibitor) Lung adenocarcinoma Resistant D NO PMID:28615362 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Erlotinib (EGFR inhibitor 1st gen) Lung Resistant A NO NCCN only alteration type L -input01 PDGFRA wildtype PDGFRA wildtype Sorafenib (Pan-TK inhibitor) Gastrointestinal stromal Responsive C NO ASCO 2011 (abstr 10009) complete GIST -input01 PDGFRA wildtype PDGFRA wildtype Sunitinib (Pan-TK inhibitor) Gastrointestinal stromal Responsive B NO PMID:18955458 complete GIST -input01 EGFR (A289N), EGFR (A289D) EGFR (L798I) Rociletinib (EGFR inhibitor) Lung adenocarcinoma Resistant C NO PMID:27283993 only alteration type LUAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Sorafenib + MEK inhibitor(Pan-TK inhibitor + MEK inhibitor) Hepatic carcinoma Responsive C NO PMID:25294897 complete HC +input01 PDGFRA wildtype PDGFRA wildtype Dasatinib(BCR-ABL inhibitor 2nd gen) Gastrointestinal stromal Responsive D NO PMID:16397263 complete GIST +input01 RET MUT* (FPEEEKCFC612-620-) RET (I788N) Ponatinib(BCR-ABL inhibitor 3rd gen&Pan-TK inhibitor) Lung adenocarcinoma Resistant D NO PMID:28615362 only alteration type LUAD +input01 PDGFRA wildtype PDGFRA wildtype Sorafenib(Pan-TK inhibitor) Gastrointestinal stromal Responsive C NO ASCO 2011 (abstr 10009) complete GIST +input01 PDGFRA wildtype PDGFRA wildtype Sunitinib(Pan-TK inhibitor) Gastrointestinal stromal Responsive B NO PMID:18955458 complete GIST +input01 EGFR (A289N), EGFR (A289D) EGFR (L798I) Rociletinib(EGFR inhibitor) Lung adenocarcinoma Resistant C NO PMID:27283993 only alteration type LUAD input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 oncogenic mutation HDAC inhibitors Retinoblastoma Responsive D NO PMID:18483379 complete RB input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 deletion HDAC inhibitors Retinoblastoma Responsive D NO PMID:18483379 only gene RB input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 oncogenic mutation MDM2/MDMX inhibitors Retinoblastoma Responsive D NO PMID:17080083;PMID:21515735 complete RB input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 deletion MDM2/MDMX inhibitors Retinoblastoma Responsive D NO PMID:17080083;PMID:21515735 only gene RB -input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 oncogenic mutation Cisplatin (Chemotherapy) Bladder Responsive C NO PMID:26238431 complete BLCA -input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 deletion Cisplatin (Chemotherapy) Bladder Responsive C NO PMID:26238431 only gene BLCA -input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 overexpression Palbociclib (CDK4/6 inhibitor) Prostate adenocarcinoma Responsive D NO PMID:23708653 only gene PRAD +input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 oncogenic mutation Cisplatin(Chemotherapy) Bladder Responsive C NO PMID:26238431 complete BLCA +input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 deletion Cisplatin(Chemotherapy) Bladder Responsive C NO PMID:26238431 only gene BLCA input01 RET MUT* (FPEEEKCFC612-620-) RET fusion RET inhibitors Lung adenocarcinoma Responsive D NO PMID:22327624;PMID:22327622 only gene LUAD input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion RET inhibitors Thyroid Responsive D NO PMID:23056499 only gene TH input01 RET MUT* (FPEEEKCFC612-620-) RET (C634W,M918T) RET inhibitors Thyroid Responsive D NO PMID:23056499 only alteration type TH -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Cabozantinib (Pan-kinase inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Cabozantinib (Pan-kinase inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA -input01 RET MUT* (FPEEEKCFC612-620-) RET (C634W,M918T) Cabozantinib (Pan-kinase inhibitor) Thyroid Responsive D NO PMID:21470995 only alteration type TH -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Nintedanib (Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:26787234 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Sunitinib (Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Sunitinib (Pan-TK inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA -input01 RET MUT* (FPEEEKCFC612-620-) RET (C634W,M918T) Sunitinib (Pan-TK inhibitor) Thyroid Responsive D NO PMID:21470995 only alteration type TH -input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Vandetanib (Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Vandetanib (Pan-TK inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA -input01 RET MUT* (FPEEEKCFC612-620-) RET (618,620,634,768,791,891,918,C634W,M918T) Vandetanib (Pan-TK inhibitor) Thyroid carcinoma Responsive A NO PMID:20065189;PMID:22025146 only alteration type THCA +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Cabozantinib(Pan-kinase inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Cabozantinib(Pan-kinase inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA +input01 RET MUT* (FPEEEKCFC612-620-) RET (C634W,M918T) Cabozantinib(Pan-kinase inhibitor) Thyroid Responsive D NO PMID:21470995 only alteration type TH +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Nintedanib(Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:26787234 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Sunitinib(Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Sunitinib(Pan-TK inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA +input01 RET MUT* (FPEEEKCFC612-620-) RET (C634W,M918T) Sunitinib(Pan-TK inhibitor) Thyroid Responsive D NO PMID:21470995 only alteration type TH +input01 RET MUT* (FPEEEKCFC612-620-) RET fusion Vandetanib(Pan-TK inhibitor) Lung adenocarcinoma Responsive C NO PMID:28447912 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET-TPCN1 fusion Vandetanib(Pan-TK inhibitor) Thyroid carcinoma Responsive D NO PMID:21470995 only gene THCA input01 STK11 (Q37*) STK11 oncogenic mutation MEK inhibitors Lung adenocarcinoma Responsive D NO PMID:19165201 complete LUAD input01 STK11 (Q37*) STK11 deletion MEK inhibitors Lung adenocarcinoma Responsive D NO PMID:19165201 only gene LUAD input01 STK11 (Q37*) STK11 oncogenic mutation MTOR inhibitors Any cancer type Responsive D YES PMID:19541609 complete CANCER input01 STK11 (Q37*) STK11 deletion MTOR inhibitors Any cancer type Responsive D YES PMID:19541609 only gene CANCER input01 STK11 (Q37*) STK11 oncogenic mutation SRC inhibitor + PI3K/MEK inhibitors Lung adenocarcinoma Responsive D NO PMID:20541700 complete LUAD input01 STK11 (Q37*) STK11 deletion SRC inhibitor + PI3K/MEK inhibitors Lung adenocarcinoma Responsive D NO PMID:20541700 only gene LUAD -input01 STK11 (Q37*) STK11 (D194E) Everolimus (MTOR inhibitor) Pancreas Responsive C NO PMID:21189378 only alteration type PA -input01 STK11 (Q37*) STK11 oncogenic mutation Phenformin (Anti-diabetic) Lung adenocarcinoma Responsive D NO PMID:23352126 complete LUAD -input01 STK11 (Q37*) STK11 deletion Phenformin (Anti-diabetic) Lung adenocarcinoma Responsive D NO PMID:23352126 only gene LUAD +input01 STK11 (Q37*) STK11 (D194E) Everolimus(MTOR inhibitor) Pancreas Responsive C NO PMID:21189378 only alteration type PA +input01 STK11 (Q37*) STK11 oncogenic mutation Phenformin(Anti-diabetic) Lung adenocarcinoma Responsive D NO PMID:23352126 complete LUAD +input01 STK11 (Q37*) STK11 deletion Phenformin(Anti-diabetic) Lung adenocarcinoma Responsive D NO PMID:23352126 only gene LUAD input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 (R248Q,R175H) HSP90 inhibitors Any cancer type Responsive D YES PMID:26009011 only alteration type CANCER input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 (R248Q,R175H) HSP90 inhibitors Any cancer type Responsive D YES PMID:26009011 only alteration type CANCER input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation WEE1 inhibitors Head an neck Responsive D NO PMID:25125259 complete HNC -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation AZD6738 (ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html complete BCL -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 deletion AZD6738 (ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html only gene BCL -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Vemurafenib (BRAF inhibitor) Cutaneous melanoma Resistant D NO PMID:20179705 complete CM -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Decitabine (Chemotherapy) Acute myeloid leukemia, Myelodisplasic proliferative syndrome Responsive C NO PMID:27959731 complete AML, MDPS -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Doxorubicin (Anthracycline antitumor antibiotic) Bladder Responsive D NO PMID:27397505 complete BLCA -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Gemcitabine (Chemotherapy) Bladder Responsive D NO PMID:27397505 complete BLCA -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Mitomycin C (Chemotherapy) Bladder Responsive D NO PMID:27397505 complete BLCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation AZD6738(ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html complete BCL +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 deletion AZD6738(ATR inhibitor) B cell lymphoma Responsive C NO NCT01955668;https://ash.confex.com/ash/2014/webprogram/Paper71027.html only gene BCL +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS oncogenic mutation Vemurafenib(BRAF inhibitor) Cutaneous melanoma Resistant D NO PMID:20179705 complete CM +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Decitabine(Chemotherapy) Acute myeloid leukemia, Myelodisplasic proliferative syndrome Responsive C NO PMID:27959731 complete AML, MDPS +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Doxorubicin(Anthracycline antitumor antibiotic) Bladder Responsive D NO PMID:27397505 complete BLCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Gemcitabine(Chemotherapy) Bladder Responsive D NO PMID:27397505 complete BLCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Mitomycin C(Chemotherapy) Bladder Responsive D NO PMID:27397505 complete BLCA input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation WEE1 inhibitors Ovary Responsive C NO PMID:27998224 complete OV -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Pramlintide (Amylin analogue) Thymic Responsive D NO PMID:25409149 complete THYM -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 deletion Pramlintide (Amylin analogue) Thymic Responsive D NO PMID:25409149 only gene THYM +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 oncogenic mutation Pramlintide(Amylin analogue) Thymic Responsive D NO PMID:25409149 complete THYM +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 deletion Pramlintide(Amylin analogue) Thymic Responsive D NO PMID:25409149 only gene THYM input01 EGFR (A289N), EGFR (A289D) EGFR (T790M) Afatinib + Erlotinib + Gefitinib Non-small cell lung Resistant A NO oncokb: oncokb=https://www.oncokb.org/gene/EGFR only alteration type NSCLC input01 EGFR (A289N), EGFR (A289D) EGFR (T790M,D761Y) Gefitinib Non-small cell lung Resistant B NO CIVIC,oncokb: CIVIC=https://civicdb.org/genes/19/summary|oncokb=https://www.oncokb.org/gene/EGFR only alteration type NSCLC input01 MTOR (L1460P) MTOR (L2209V,L1460P,L2427Q) Temsirolimus Renal clear cell Responsive C NO oncokb: oncokb=https://www.oncokb.org/gene/MTOR complete RCCC @@ -224,163 +234,242 @@ input01 RET MUT* (FPEEEKCFC612-620-) RET-KIF5B fusion Larotrectinib + 292 + 667 input01 RET MUT* (FPEEEKCFC612-620-) RET-CCDC6 fusion Larotrectinib + 292 + 667 Thyroid medullary Responsive C NO oncokb: oncokb=https://www.oncokb.org/gene/RET only gene THM input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS (Q61K,T50I,G13D,G60E,G12C,G12V,T58I,.,Q61H,G12R,G12D,Q61L,G13V,Q61R) Selumetinib Thyroid carcinoma Responsive C NO oncokb: oncokb=https://www.oncokb.org/gene/NRAS complete THCA input01 EGFR (A289N), EGFR (A289D) EGFR amplification Lapatinib Glioma Responsive D NO oncokb: oncokb=https://www.oncokb.org/gene/EGFR only gene G -input01 AKT1 (E17K) AKT1 E17K Vemurafenib Cutaneous melanoma Resistant D NO https://civicdb.org/links/molecular_profiles/4 complete CM -input01 AKT1 (E17K) AKT1 E17K Uprosertib Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/4 complete CM -input01 AKT1 (Q79K) AKT1 Q79K Vemurafenib Cutaneous melanoma Resistant D NO https://civicdb.org/links/molecular_profiles/169 complete CM -input01 AKT1 (Q79K) AKT1 Q79K Dabrafenib Cutaneous melanoma Resistant C NO https://civicdb.org/links/molecular_profiles/169 complete CM -input01 ATM (N2875H) ATM Mutation Temozolomide Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/178 complete CM -input01 BRAF wildtype BRAF WILD TYPE MEK Inhibitor RO4987655 Cutaneous melanoma Resistant B NO https://civicdb.org/links/molecular_profiles/422 complete CM -input01 EGFR (A289N), EGFR (A289D) EGFR A763_Y764insFQEA Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/1423 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR A763_Y764insFQEA Osimertinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1423 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR A767_V769dupASV Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/1487 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR A767_V769dupASV Osimertinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1487 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR A864T Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/1161 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR C797S Osimertinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/411 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR C797S Osimertinib Non-small cell lung Resistant B NO https://civicdb.org/links/molecular_profiles/411 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR D761Y Erlotinib,Gefitinib Non-small cell lung Resistant C NO https://civicdb.org/links/molecular_profiles/693 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insG Osimertinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1420 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insGL Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/1422 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insGT Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/1474 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insNPG Afatinib,Gefitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/1477 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR D770delinsGY Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/2090 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR E746G Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/705 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR E746_A750del Gefitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/976 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR E746_A750del Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/976 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/2079 only gene LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Icotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/2079 only gene LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Osimertinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/2079 only gene LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR G719 Erlotinib Lung adenocarcinoma Response B NO https://civicdb.org/links/molecular_profiles/699 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR G719 Gefitinib,Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/699 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719A Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/973 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719A Gefitinib,Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/973 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719D Gefitinib,Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1328 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719S Gefitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/134 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719S Gefitinib,Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/134 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR G719S Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/134 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR H773_V774insNPH Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/1421 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR K757R Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/704 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR K806E Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1771 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR KIF5B::EGFR Afatinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/4169 only gene LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L747P Gefitinib,Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1767 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L747_P753delinsS Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/986 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L747_P753delinsS Erlotinib Pancreas adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/986 only alteration type PAAD -input01 EGFR (A289N), EGFR (A289D) EGFR L747_S752delinsQ Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/1488 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L838P Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1365 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Lung adenocarcinoma Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Lung adenocarcinoma Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Lung adenocarcinoma Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Lung adenocarcinoma Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Cetuximab Lung adenocarcinoma Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Crizotinib Non-small cell lung Resistant C NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib,Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Lapatinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Dacomitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Neratinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Canertinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Response A NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Non-small cell lung Response A NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Osimertinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Dacomitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/33 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Small cell lung Response D NO https://civicdb.org/links/molecular_profiles/33 only alteration type SCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L861 Erlotinib,Gefitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/1742 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L861Q Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/994 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR L861R Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1385 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR M766_A767insAI Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/1572 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Afatinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/438 complete NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Gefitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/438 complete NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib,Gefitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/438 complete NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/438 complete NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/438 complete NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR N826S Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/1162 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR N826Y Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1772 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR N842S Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1775 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR P772_H773insYNP Erlotinib Non-small cell lung Resistant C NO https://civicdb.org/links/molecular_profiles/1575 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR R705K Erlotinib,Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/2206 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR R776C Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/1155 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR S720 Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/701 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/molecular_profiles/558 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/558 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR S768I Gefitinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/558 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/558 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib,Erlotinib Lung adenocarcinoma Resistant B NO https://civicdb.org/links/molecular_profiles/34 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/34 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Erlotinib Non-small cell lung Resistant A NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib Non-small cell lung Resistant B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Dacomitinib Non-small cell lung Resistant B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Erlotinib,Gefitinib Non-small cell lung Resistant B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Afatinib Non-small cell lung Resistant B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib,Erlotinib Non-small cell lung Resistant C NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Lapatinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Pemetrexed,Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Rociletinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Rociletinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib,Rociletinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Response A NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Dacomitinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Neratinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Afatinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Canertinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/34 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Pancreas adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/34 only alteration type PAAD -input01 EGFR (A289N), EGFR (A289D) EGFR T847I Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1371 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR V742A Erlotinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/975 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR V769_D770insASV Erlotinib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/717 only alteration type LUAD -input01 EGFR (A289N), EGFR (A289D) EGFR V774A Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1768 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR V774M Erlotinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1770 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR V834I Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1773 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR V851I Gefitinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1374 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Y764_V765insHH Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/1573 only alteration type NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Platinum Compound,Cetuximab,Fluorouracil Head an neck squamous Response B NO https://civicdb.org/links/molecular_profiles/190 only gene HNSC -input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Osimertinib,Rociletinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/190 only gene NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/190 only gene NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Erlotinib,Gefitinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/190 only gene NSCLC -input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Gefitinib,Erlotinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/190 only gene NSCLC -input01 GNAQ (Q209R) GNAQ Mutation JQ1 Uveal melanoma Response D NO https://civicdb.org/links/molecular_profiles/501 complete UVM -input01 GNAQ (Q209R) GNAQ Mutation Trametinib Uveal melanoma Response B NO https://civicdb.org/links/molecular_profiles/501 complete UVM -input01 GNAQ (Q209R) GNAQ Mutation Sotrastaurin Acetate,Mirdametinib Uveal melanoma Response D NO https://civicdb.org/links/molecular_profiles/501 complete UVM -input01 GNAQ (Q209R) GNAQ Mutation Cabozantinib Uveal melanoma Response B NO https://civicdb.org/links/molecular_profiles/501 complete UVM -input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ Q209 Selumetinib Uveal melanoma Response B NO https://civicdb.org/links/molecular_profiles/503 complete UVM -input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ Q209 Refametinib Uveal melanoma Response C NO https://civicdb.org/links/molecular_profiles/503 complete UVM -input01 HRAS (G12S) HRAS Mutation Tipifarnib Bladder Response B NO https://civicdb.org/links/molecular_profiles/271 complete BLCA -input01 HRAS (G12S) HRAS Mutation Tipifarnib Head an neck squamous Response B NO https://civicdb.org/links/molecular_profiles/271 complete HNSC -input01 JAK1 (V658F), JAK1 (S646F), JAK1 (A634D) JAK1 S703I Ruxolitinib Hepatic carcinoma Response D NO https://civicdb.org/links/molecular_profiles/800 only alteration type HC -input01 KIT wildtype KIT WILDTYPE Regorafenib Gastrointestinal stromal Response B NO https://civicdb.org/links/molecular_profiles/2520 complete GIST -input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR E1799K Sirolimus Renal clear cell Response D NO https://civicdb.org/links/molecular_profiles/540 only alteration type RCCC -input01 MTOR (H1968Y) MTOR H1968Y PI3K/BET Inhibitor LY294002,Capivasertib Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/279 complete CM -input01 MTOR (P2213S) MTOR P2213S PI3K/BET Inhibitor LY294002,Capivasertib Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/280 complete CM -input01 NRAS (G13D) NRAS G13D Tanespimycin Cutaneous melanoma Response C NO https://civicdb.org/links/molecular_profiles/93 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation MEK Inhibitor RO4987655 Cutaneous melanoma Resistant C NO https://civicdb.org/links/molecular_profiles/208 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Dabrafenib,Vemurafenib Cutaneous melanoma Resistant B NO https://civicdb.org/links/molecular_profiles/208 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Trametinib Cutaneous melanoma Response B NO https://civicdb.org/links/molecular_profiles/208 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Trametinib,Omipalisib Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/208 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Binimetinib Cutaneous melanoma Response D NO https://civicdb.org/links/molecular_profiles/208 complete CM -input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS Q61 Vemurafenib Cutaneous melanoma Resistant B NO https://civicdb.org/links/molecular_profiles/94 complete CM -input01 NRAS (Q61K) NRAS Q61K Binimetinib,Everolimus Neuroblastoma Response D NO https://civicdb.org/links/molecular_profiles/423 complete NB -input01 NRAS (Q61K) NRAS Q61K Trametinib,Selumetinib Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/423 complete NSCLC -input01 NRAS (Q61L) NRAS Q61L Temozolomide Cutaneous melanoma Response C NO https://civicdb.org/links/molecular_profiles/95 complete CM -input01 NRAS (Q61R) NRAS Q61R Temozolomide Cutaneous melanoma Response C NO https://civicdb.org/links/molecular_profiles/96 complete CM -input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 Mutation Chemotherapy Small cell lung Response B NO https://civicdb.org/links/molecular_profiles/777 complete SCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET CCDC6::RET Nintedanib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/622 only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Cabozantinib Lung adenocarcinoma Response B NO https://civicdb.org/links/molecular_profiles/1595 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Vandetanib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/1595 only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Alectinib Non-small cell lung Response C NO https://civicdb.org/links/molecular_profiles/1595 only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Selpercatinib Non-small cell lung Response B NO https://civicdb.org/links/molecular_profiles/1595 only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Pralsetinib Non-small cell lung Response A NO https://civicdb.org/links/molecular_profiles/1595 only gene NSCLC -input01 RET MUT* (FPEEEKCFC612-620-) RET KIF5B::RET Vandetanib Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/269 only gene LUAD -input01 RET MUT* (FPEEEKCFC612-620-) RET KIF5B::RET Vandetanib,Everolimus Lung adenocarcinoma Response C NO https://civicdb.org/links/molecular_profiles/269 only gene LUAD -input01 RUNX1 (R201*) RUNX1 Mutation Cytarabine Acute myeloid leukemia Resistant B NO https://civicdb.org/links/molecular_profiles/155 complete AML -input01 STK11 (Q37*) STK11 Mutation Atezolizumab,Pembrolizumab,Nivolumab Lung adenocarcinoma Resistant B NO https://civicdb.org/links/molecular_profiles/696 complete LUAD -input01 STK11 (Q37*) STK11 Loss Docetaxel,Selumetinib Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/481 only gene NSCLC -input01 STK11 (Q37*) STK11 Loss Everolimus,Sirolimus Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/481 only gene NSCLC -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Selumetinib,Docetaxel Non-small cell lung Response D NO https://civicdb.org/links/molecular_profiles/222 complete NSCLC -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Chemotherapy Stomach Response B NO https://civicdb.org/links/molecular_profiles/222 complete ST -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 R273H Doxorubicin,Methotrexate Osteosarcoma Resistant D NO https://civicdb.org/links/molecular_profiles/122 only alteration type OS -input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Loss Docetaxel Non-small cell lung Resistant D NO https://civicdb.org/links/molecular_profiles/4407 only gene NSCLC +input01 AKT1 (E17K) AKT1 E17K Akt Inhibitor MK2206 Breast adenocarcinoma Responsive D YES https://civicdb.org/links/evidence_items/231 complete BRCA +input01 AKT1 (E17K) AKT1 E17K Capivasertib Breast adenocarcinoma Responsive C YES https://civicdb.org/links/evidence_items/709 complete BRCA +input01 AKT1 (E17K) AKT1 E17K Vemurafenib Cutaneous melanoma Resistant D NO https://civicdb.org/links/evidence_items/4029 complete CM +input01 AKT1 (E17K) AKT1 E17K Uprosertib Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/707 complete CM +input01 AKT1 (Q79K) AKT1 Q79K Vemurafenib Cutaneous melanoma Resistant D NO https://civicdb.org/links/evidence_items/439 complete CM +input01 AKT1 (Q79K) AKT1 Q79K Vemurafenib Cutaneous melanoma Resistant D NO https://civicdb.org/links/evidence_items/4498 complete CM +input01 AKT1 (Q79K) AKT1 Q79K Dabrafenib Cutaneous melanoma Resistant C NO https://civicdb.org/links/evidence_items/6260 complete CM +input01 ATM (N2875H) ATM Mutation Temozolomide Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/453 complete CM +input01 ATM (N2875H) ATM Mutation Temozolomide Glioblastoma Responsive D NO https://civicdb.org/links/evidence_items/452 complete GB +input01 ATM (N2875H) ATM Mutation Olaparib Prostate adenocarcinoma Responsive A NO https://civicdb.org/links/evidence_items/8505 complete PRAD +input01 BRAF wildtype BRAF WILD TYPE MEK Inhibitor RO4987655 Cutaneous melanoma Resistant B NO https://civicdb.org/links/evidence_items/995 complete CM +input01 EGFR (A289N), EGFR (A289D) EGFR A763_Y764insFQEA Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4497 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR A763_Y764insFQEA Osimertinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/9225 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR A767_V769dupASV Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4665 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR A767_V769dupASV Osimertinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/9220 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR A864T Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4495 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR C797S Osimertinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/1396 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR C797S Osimertinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/964 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR D761Y Erlotinib,Gefitinib Non-small cell lung Resistant C NO https://civicdb.org/links/evidence_items/1763 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insG Osimertinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/9223 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insGL Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4494 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insGT Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4643 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR D770_N771insNPG Gefitinib,Afatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/5947 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR D770delinsGY Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4801 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR E746G Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1787 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR E746_A750del Gefitinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2625 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR E746_A750del Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4198 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/5909 only gene LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Icotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/7314 only gene LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/11015 only gene LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR EGFR::RAD51 Osimertinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/11021 only gene LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR G465R Cetuximab,Panitumumab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/1058 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR G465R Futuximab/Modotuximab Mixture Colorectal adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1057 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR G719 Erlotinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/1780 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR G719 Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/4189 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719A Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/2508 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719A Erlotinib,Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/6181 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719D Gefitinib,Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4210 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719S Cetuximab Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/787 only alteration type 823.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR G719S Gefitinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/274 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719S Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/1736 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G719S Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4190 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR G724S Cetuximab Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/786 only alteration type 823.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR H773_V774insNPH Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4493 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR K467T Cetuximab Colorectal adenocarcinoma Resistant D NO https://civicdb.org/links/evidence_items/1083 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR K467T Panitumumab,Futuximab/Modotuximab Mixture Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/1082 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR K757R Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1786 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR K806E Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4239 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR KIF5B::EGFR Afatinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/11026 only gene LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L747P Gefitinib,Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4220 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L747_P753delinsS Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4266 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L747_P753delinsS Erlotinib Pancreas adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/6005 only alteration type PAAD +input01 EGFR (A289N), EGFR (A289D) EGFR L747_S752delinsQ Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/4667 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L838P Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4252 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/879 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/883 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/982 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/2624 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/2634 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/4290 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Lung adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/4291 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Cetuximab Lung adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/4292 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/6183 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Crizotinib Non-small cell lung Resistant C NO https://civicdb.org/links/evidence_items/4288 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib,Erlotinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/229 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/275 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/276 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/885 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/968 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/1665 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/2621 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Lapatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2626 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Dacomitinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2627 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Neratinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2628 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2629 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Canertinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2631 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/2632 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive A NO https://civicdb.org/links/evidence_items/2994 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Afatinib Non-small cell lung Responsive A NO https://civicdb.org/links/evidence_items/2997 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4284 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4286 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4287 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Osimertinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4294 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Dacomitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/4860 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L858R Erlotinib Small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4293 only alteration type SCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L861 Gefitinib,Erlotinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/4298 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L861Q Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/3802 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR L861R Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4669 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR M766_A767insAI Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/4799 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Afatinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/1728 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/1937 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/2053 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/2148 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Afatinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/2153 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/2559 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/3016 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/3794 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4201 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Mutation Erlotinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/7024 complete NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR N826S Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/4496 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR N826Y Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4244 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR N842S Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4256 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR P772_H773insYNP Erlotinib Non-small cell lung Resistant C NO https://civicdb.org/links/evidence_items/4802 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR R451C Futuximab/Modotuximab Mixture,Cetuximab,Panitumumab Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/1081 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR R705K Erlotinib,Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/6182 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR R776C Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4468 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR S492R Cetuximab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/717 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR S492R Cetuximab Colorectal adenocarcinoma Resistant D NO https://civicdb.org/links/evidence_items/1080 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR S492R Panitumumab Colorectal adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1078 only alteration type 826.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR S492R Panitumumab,Futuximab/Modotuximab Mixture Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/1079 only alteration type COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR S720 Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/1782 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Lung adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/4273 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1394 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR S768I Gefitinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1395 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR S768I Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/2906 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib,Erlotinib Lung adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/1391 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1397 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/2157 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Erlotinib Non-small cell lung Resistant A NO https://civicdb.org/links/evidence_items/238 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/239 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Dacomitinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/240 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Erlotinib,Gefitinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/1667 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Afatinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/1863 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib,Erlotinib Non-small cell lung Resistant C NO https://civicdb.org/links/evidence_items/2158 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Gefitinib Non-small cell lung Resistant B NO https://civicdb.org/links/evidence_items/2159 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Lapatinib Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/2160 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Pemetrexed,Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/277 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Rociletinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/646 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Rociletinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/762 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/963 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/965 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/966 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Rociletinib,Osimertinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/967 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Responsive A NO https://civicdb.org/links/evidence_items/1592 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Non-small cell lung Responsive A NO https://civicdb.org/links/evidence_items/1867 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Dacomitinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2161 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Neratinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2162 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Afatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2163 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Afatinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2164 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Canertinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2165 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR T790M Osimertinib Pancreas adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/6006 only alteration type PAAD +input01 EGFR (A289N), EGFR (A289D) EGFR T847I Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4260 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR V742A Erlotinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/4197 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR V769_D770insASV Erlotinib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1799 only alteration type LUAD +input01 EGFR (A289N), EGFR (A289D) EGFR V774A Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4226 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR V774M Erlotinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4231 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR V834I Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4248 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR V851I Gefitinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4264 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Y764_V765insHH Erlotinib Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/4800 only alteration type NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Cetuximab,Panitumumab Colorectal adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/854 only gene 834.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Cetuximab Colorectal adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/911 only gene 823.0 COREAD +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Platinum Compound,Cetuximab,Fluorouracil Head an neck squamous Responsive B NO https://civicdb.org/links/evidence_items/691 only gene HNSC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Rociletinib,Osimertinib Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/3015 only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/948 only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/977 only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/5924 only gene NSCLC +input01 EGFR (A289N), EGFR (A289D) EGFR Amplification Erlotinib,Gefitinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/5925 only gene NSCLC +input01 GNAQ (Q209R) GNAQ Mutation JQ1 Uveal melanoma Responsive D NO https://civicdb.org/links/evidence_items/1210 complete UVM +input01 GNAQ (Q209R) GNAQ Mutation Trametinib Uveal melanoma Responsive B NO https://civicdb.org/links/evidence_items/1229 complete UVM +input01 GNAQ (Q209R) GNAQ Mutation Mirdametinib,Sotrastaurin Acetate Uveal melanoma Responsive D NO https://civicdb.org/links/evidence_items/1953 complete UVM +input01 GNAQ (Q209R) GNAQ Mutation Cabozantinib Uveal melanoma Responsive B NO https://civicdb.org/links/evidence_items/5068 complete UVM +input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ Q209 Selumetinib Uveal melanoma Responsive B NO https://civicdb.org/links/evidence_items/1213 complete UVM +input01 GNAQ (Q209R), GNAQ MUT* (Q209L) GNAQ Q209 Refametinib Uveal melanoma Responsive C NO https://civicdb.org/links/evidence_items/1233 complete UVM +input01 GNAS (R844L), GNAS (Q870L) GNAS R201C Cetuximab,Vemurafenib,Irinotecan Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/1906 only alteration type COREAD +input01 HRAS (G12S) HRAS G13D Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/699 only alteration type COREAD +input01 HRAS (G12S) HRAS G13D Cetuximab Colorectal adenocarcinoma Resistant D NO https://civicdb.org/links/evidence_items/3852 only alteration type COREAD +input01 HRAS (G12S) HRAS Mutation Tipifarnib Bladder Responsive B NO https://civicdb.org/links/evidence_items/9632 complete BLCA +input01 HRAS (G12S) HRAS Mutation Tipifarnib Head an neck squamous Responsive B NO https://civicdb.org/links/evidence_items/9633 complete HNSC +input01 JAK1 (V658F), JAK1 (S646F), JAK1 (A634D) JAK1 S703I Ruxolitinib Hepatic carcinoma Responsive D NO https://civicdb.org/links/evidence_items/1900 only alteration type HC +input01 KIT wildtype KIT WILDTYPE Regorafenib Gastrointestinal stromal Responsive B NO https://civicdb.org/links/evidence_items/4144 complete GIST +input01 KRAS wildtype KRAS Wildtype Regorafenib Colorectal adenocarcinoma Resistant D NO https://civicdb.org/links/evidence_items/8840 complete COREAD +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR A2034V Sirolimus Breast adenocarcinoma Resistant D YES https://civicdb.org/links/evidence_items/1547 only alteration type BRCA +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR A2034V RapaLink-1,MTOR Kinase Inhibitor AZD8055 Breast adenocarcinoma Resistant D YES https://civicdb.org/links/evidence_items/1548 only alteration type BRCA +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR E1799K Sirolimus Renal clear cell Responsive D NO https://civicdb.org/links/evidence_items/1321 only alteration type 805.0 RCCC +input01 MTOR (F2108L) MTOR F2108L Sirolimus Breast adenocarcinoma Resistant D YES https://civicdb.org/links/evidence_items/1543 complete BRCA +input01 MTOR (F2108L) MTOR F2108L Everolimus Thyroid carcinoma Resistant C NO https://civicdb.org/links/evidence_items/1110 complete THCA +input01 MTOR (H1968Y) MTOR H1968Y PI3K/BET Inhibitor LY294002,Capivasertib Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/713 complete CM +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR M2327I MTOR Kinase Inhibitor AZD8055 Breast adenocarcinoma Resistant D YES https://civicdb.org/links/evidence_items/1544 only alteration type BRCA +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR M2327I Sirolimus,RapaLink-1 Breast adenocarcinoma Resistant D YES https://civicdb.org/links/evidence_items/1545 only alteration type BRCA +input01 MTOR (R2505P), MTOR (I2500M), MTOR (I2500F), MTOR (E2419K), MTOR (Q2223K), MTOR (S2215F), MTOR (S2215Y), MTOR (S2215T), MTOR (P2213S), MTOR (F2108L), MTOR (E2014K), MTOR (H1968Y), MTOR (C1483W), MTOR (C1483F), MTOR (C1483Y), MTOR (C1483R), MTOR (L1460P) MTOR Mutation Everolimus,Pazopanib Bladder Responsive C NO https://civicdb.org/links/evidence_items/705 complete BLCA +input01 MTOR (P2213S) MTOR P2213S PI3K/BET Inhibitor LY294002,Capivasertib Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/722 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS G12C Cetuximab,Chemotherapy Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/3845 only alteration type COREAD +input01 NRAS (G12D) NRAS G12D Irinotecan,Cetuximab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/2002 complete COREAD +input01 NRAS (G12D) NRAS G12D Cetuximab Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/3693 complete COREAD +input01 NRAS (G13D) NRAS G13D Tanespimycin Cutaneous melanoma Responsive C NO https://civicdb.org/links/evidence_items/21 complete CM +input01 NRAS (G13R) NRAS G13R Cetuximab,Irinotecan Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/2204 complete COREAD +input01 NRAS (G13R) NRAS G13R Panitumumab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/3842 complete COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation MEK Inhibitor RO4987655 Cutaneous melanoma Resistant C NO https://civicdb.org/links/evidence_items/996 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Dabrafenib,Vemurafenib Cutaneous melanoma Resistant B NO https://civicdb.org/links/evidence_items/6263 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Trametinib Cutaneous melanoma Responsive B NO https://civicdb.org/links/evidence_items/1227 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Trametinib,Omipalisib Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/1429 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Binimetinib Cutaneous melanoma Responsive D NO https://civicdb.org/links/evidence_items/1509 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Cetuximab Colorectal adenocarcinoma Resistant D NO https://civicdb.org/links/evidence_items/1703 complete COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Cetuximab,Chemotherapy Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/2210 complete COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Mutation Cetuximab,Panitumumab Colorectal adenocarcinoma Resistant A NO https://civicdb.org/links/evidence_items/5344 complete COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K), NRAS (A18T), NRAS (G13V), NRAS (G13A), NRAS (G13D), NRAS (G13C), NRAS (G13R), NRAS (G13S), NRAS (G12V), NRAS (G12A), NRAS (G12D) NRAS Q179X Cetuximab Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/4785 only alteration type COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS Q61 Vemurafenib Cutaneous melanoma Resistant B NO https://civicdb.org/links/evidence_items/14 complete CM +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS Q61 Cetuximab,Chemotherapy Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/36 complete COREAD +input01 NRAS (Q61H), NRAS (Q61H), NRAS MUT* (Q61L), NRAS MUT* (Q61R), NRAS (Q61L), NRAS (Q61R), NRAS (Q61P), NRAS MUT* (Q61R), NRAS (Q61*), NRAS (Q61E), NRAS (Q61K) NRAS Q61 Cetuximab Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/124 complete COREAD +input01 NRAS (Q61H) NRAS Q61H Irinotecan,Cetuximab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/3690 complete COREAD +input01 NRAS (Q61K) NRAS Q61K Cetuximab,Chemotherapy Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/2189 complete COREAD +input01 NRAS (Q61K) NRAS Q61K Selumetinib,Dactolisib Colorectal adenocarcinoma Responsive D NO https://civicdb.org/links/evidence_items/2192 complete COREAD +input01 NRAS (Q61K) NRAS Q61K Everolimus,Binimetinib Neuroblastoma Responsive D NO https://civicdb.org/links/evidence_items/1002 complete NB +input01 NRAS (Q61K) NRAS Q61K Selumetinib,Trametinib Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/2907 complete NSCLC +input01 NRAS (Q61L) NRAS Q61L Temozolomide Cutaneous melanoma Responsive C NO https://civicdb.org/links/evidence_items/22 complete CM +input01 NRAS (Q61L) NRAS Q61L Cetuximab,Irinotecan Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/2181 complete COREAD +input01 NRAS (Q61R) NRAS Q61R Temozolomide Cutaneous melanoma Responsive C NO https://civicdb.org/links/evidence_items/23 complete CM +input01 NRAS (Q61R) NRAS Q61R Cetuximab Colorectal adenocarcinoma Resistant C NO https://civicdb.org/links/evidence_items/2184 complete COREAD +input01 PIK3CA wildtype PIK3CA Wildtype Aspirin Colorectal adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/2038 complete COREAD +input01 RB1 (R556*), RB1 (R579*), RB1 (C706F), RB1 (E748*) RB1 Mutation Chemotherapy Small cell lung Responsive B NO https://civicdb.org/links/evidence_items/1866 complete SCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET CCDC6::RET Agerafenib Colorectal adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/7480 only gene COREAD +input01 RET MUT* (FPEEEKCFC612-620-) RET CCDC6::RET Nintedanib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/1601 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Cabozantinib Lung adenocarcinoma Responsive B NO https://civicdb.org/links/evidence_items/4847 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Vandetanib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/4848 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Vandetanib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/4849 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Alectinib Non-small cell lung Responsive C NO https://civicdb.org/links/evidence_items/4850 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Selpercatinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/7066 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Selpercatinib Non-small cell lung Responsive B NO https://civicdb.org/links/evidence_items/8850 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Pralsetinib Non-small cell lung Responsive A NO https://civicdb.org/links/evidence_items/11233 only gene NSCLC +input01 RET MUT* (FPEEEKCFC612-620-) RET Fusion Selpercatinib Thyroid carcinoma Responsive A NO https://civicdb.org/links/evidence_items/8852 only gene THCA +input01 RET MUT* (FPEEEKCFC612-620-) RET KIF5B::RET Vandetanib Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/698 only gene LUAD +input01 RET MUT* (FPEEEKCFC612-620-) RET KIF5B::RET Vandetanib,Everolimus Lung adenocarcinoma Responsive C NO https://civicdb.org/links/evidence_items/1622 only gene LUAD +input01 RUNX1 (R201*) RUNX1 Mutation Cytarabine Acute myeloid leukemia Resistant B NO https://civicdb.org/links/evidence_items/411 complete AML +input01 SMAD4 (D537Y) SMAD4 Mutation Cetuximab,Panitumumab Colorectal adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/719 complete COREAD +input01 STK11 (Q37*) STK11 Mutation Pembrolizumab,Nivolumab,Atezolizumab Lung adenocarcinoma Resistant B NO https://civicdb.org/links/evidence_items/6441 complete LUAD +input01 STK11 (Q37*) STK11 Loss Selumetinib,Docetaxel Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/1144 only gene NSCLC +input01 STK11 (Q37*) STK11 Loss Everolimus,Sirolimus Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/1620 only gene NSCLC +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 M237I MDM2 Inhibitor AMGMDS3 Glioblastoma Resistant D NO https://civicdb.org/links/evidence_items/4885 only alteration type GB +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Tamoxifen Breast adenocarcinoma Resistant C YES https://civicdb.org/links/evidence_items/2784 complete BRCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Doxorubicin Breast adenocarcinoma Responsive D YES https://civicdb.org/links/evidence_items/851 complete BRCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Selumetinib,Docetaxel Non-small cell lung Responsive D NO https://civicdb.org/links/evidence_items/1145 complete NSCLC +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Pazopanib,Vorinostat Solid tumors Responsive B YES https://civicdb.org/links/evidence_items/7540 complete SOLID +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Mutation Chemotherapy Stomach Responsive B NO https://civicdb.org/links/evidence_items/850 complete ST +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 R175H Doxorubicin Breast adenocarcinoma Responsive D YES https://civicdb.org/links/evidence_items/319 only alteration type BRCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 R249 Doxorubicin Breast adenocarcinoma Responsive B YES https://civicdb.org/links/evidence_items/399 only alteration type BRCA +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 R273H Methotrexate,Doxorubicin Osteosarcoma Resistant D NO https://civicdb.org/links/evidence_items/7430 only alteration type OS +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 R273L Cisplatin,Carboplatin Ovary Resistant C NO https://civicdb.org/links/evidence_items/2286 only alteration type OV +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Y234C Cisplatin,Carboplatin Ovary Resistant C NO https://civicdb.org/links/evidence_items/2745 only alteration type OV +input01 TP53 (R306*), TP53 (E286V), TP53 (E286G), TP53 (E286A), TP53 (E286Q) TP53 Loss Docetaxel Non-small cell lung Resistant D NO https://civicdb.org/links/evidence_items/1146 only gene NSCLC diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/cna_analysis.tsv b/example_files/cgi_test_out/cgi_test_out.cgi_results/cna_analysis.tsv deleted file mode 100644 index 778c483..0000000 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/cna_analysis.tsv +++ /dev/null @@ -1,4 +0,0 @@ -internal_id sample gene cna cancer predicted_in_tumors gene_role known_in_tumors driver driver_statement predicted_match known_match -input01_1 test_1 ERBB2 AMP CANCER CESC;ESCA;HNSC;LUAD;PAAD;STAD;UCEC Act BRCA;OV;CANCER;NSCLC;ST;BT;COREAD;BLCA;GEJA;HNC;ED known known in: BRCA;OV;CANCER;NSCLC;ST;BT;COREAD;BLCA;GEJA;HNC;ED known_match known_match -input01_2 test_1 TP53 DEL CANCER S LoF THYM;BCL known known in: THYM;BCL known_match known_match -input01_3 test_1 EGFR AMP CANCER BLCA;CESC;ESCA;LGG;LUAD;LUSC;STAD Act G;NSCLC;ED;HNSC;COREAD known known in: G;NSCLC;ED;HNSC;COREAD known_match known_match diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/input01.tsv b/example_files/cgi_test_out/cgi_test_out.cgi_results/input01.tsv index 3ab2abc..a4a1420 100644 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/input01.tsv +++ b/example_files/cgi_test_out/cgi_test_out.cgi_results/input01.tsv @@ -8,93 +8,93 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO -1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3744699 -1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7734825 -1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4990350 -1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4246169 -1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2388004 -1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1527345 -1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6270252 -1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3102092 -1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1746155 -1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=1313945 -1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3236047 -1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8700937 -1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5108921 -1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3380766 -1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2978136 -1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1606415 -1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9704791 -1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=9915688 -1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2437215 -1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5087472 -1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=7008926 -1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8708707 -1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=6671862 -1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=4711307 -1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=9112045 -1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=5288713 -1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=4722228 -1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=2491223 -1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=8899969 -1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=1538728 -1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4658766 -1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4115311 -1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8393236 -1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2428627 -1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4927461 -1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3564378 -1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8880916 -1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7049806 -1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1923576 -1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3726287 -1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9040406 -1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9146704 -1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4683735 -1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5046267 -1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1004259 -1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2321116 -1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5441901 -1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2666427 -1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9188595 -1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7339764 -1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6610279 -7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1768798 -7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3892747 -9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3098257 -9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6921082 -10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8038054 -11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings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A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4587089 -11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5416609 -11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=5798338 -11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1782742 -11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=8563176 -11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=1154749 -11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=3561112 -13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2889115 -13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=4495364 -13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=5303302 -13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9336397 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=3156815 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=6394018 -14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=4696213 -14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1506234 -16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=7653957 -16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2970354 -16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2785555 -16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=7152809 -16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=4985405 -16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=9568332 -16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2012808 -17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=6850825 -17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=4829251 -17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=5327814 -17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=6431520 -17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9949104 -18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=8014594 -19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=1501289 -20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1074175 -20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=8157695 -21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4326712 -22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=6578479 -X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3400584 +1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4580782 +1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3209279 +1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2558221 +1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8339125 +1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8043490 +1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9978383 +1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7720974 +1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8254898 +1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9718750 +1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=5554766 +1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5349064 +1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9546852 +1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1777257 +1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8667542 +1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4564661 +1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1009485 +1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4987929 +1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=1650397 +1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5762771 +1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2255776 +1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=2306693 +1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5480143 +1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=2983255 +1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=8033200 +1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=6094160 +1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1785099 +1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=3731083 +1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=5887615 +1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=9958612 +1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=7084227 +1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9141116 +1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9191168 +1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=5335782 +1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2316148 +1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9121210 +1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4545130 +1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1042289 +1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7689375 +1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4309104 +1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8335601 +1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9881851 +1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8212670 +1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6399676 +1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2637206 +1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4258223 +1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6055955 +1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8033165 +1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9789023 +1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5092183 +1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9037188 +1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9664066 +7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=3955283 +7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2574659 +9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2553161 +9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6761480 +10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8917004 +11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings:1crp.A&PDB-ENSP_mappings:1crq.A&PDB-ENSP_mappings:1crr.A&PDB-ENSP_mappings:1ctq.A&PDB-ENSP_mappings:1gnp.A&PDB-ENSP_mappings:1gnq.A&PDB-ENSP_mappings:1gnr.A&PDB-ENSP_mappings:1he8.B&PDB-ENSP_mappings:1iaq.A&PDB-ENSP_mappings:1iaq.B&PDB-ENSP_mappings:1iaq.C&PDB-ENSP_mappings:1ioz.A&PDB-ENSP_mappings:1jah.A&PDB-ENSP_mappings:1jai.A&PDB-ENSP_mappings:1k8r.A&PDB-ENSP_mappings:1lf0.A&PDB-ENSP_mappings:1lf5.A&PDB-ENSP_mappings:1lfd.B&PDB-ENSP_mappings:1lfd.D&PDB-ENSP_mappings:1nvu.Q&PDB-ENSP_mappings:1nvu.R&PDB-ENSP_mappings:1nvv.Q&PDB-ENSP_mappings:1nvv.R&PDB-ENSP_mappings:1nvw.Q&PDB-ENSP_mappings:1nvw.R&PDB-ENSP_mappings:1nvx.Q&PDB-ENSP_mappings:1nvx.R&PDB-ENSP_mappings:1p2s.A&PDB-ENSP_mappings:1p2t.A&PDB-ENSP_mappings:1p2u.A&PDB-ENSP_mappings:1p2v.A&PDB-ENSP_mappings:1plj.A&PDB-ENSP_mappings:1plk.A&PDB-ENSP_mappings:1pll.A&PDB-ENSP_mappings:1q21.A&PDB-ENSP_mappings:1qra.A&PDB-ENSP_mappings:1rvd.A&PDB-ENSP_mappings:1wq1.R&PDB-ENSP_mappings:1xcm.A&PDB-ENSP_mappings:1xd2.A&PDB-ENSP_mappings:1xd2.B&PDB-ENSP_mappings:1xj0.A&PDB-ENSP_mappings:1zvq.A&PDB-ENSP_mappings:1zw6.A&PDB-ENSP_mappings:221p.A&PDB-ENSP_mappings:2c5l.A&PDB-ENSP_mappings:2c5l.B&PDB-ENSP_mappings:2ce2.X&PDB-ENSP_mappings:2cl0.X&PDB-ENSP_mappings:2cl6.X&PDB-ENSP_mappings:2cl7.X&PDB-ENSP_mappings:2clc.X&PDB-ENSP_mappings:2cld.X&PDB-ENSP_mappings:2evw.X&PDB-ENSP_mappings:2lcf.A&PDB-ENSP_mappings:2lwi.A&PDB-ENSP_mappings:2n42.A&PDB-ENSP_mappings:2n46.A&PDB-ENSP_mappings:2q21.A&PDB-ENSP_mappings:2quz.A&PDB-ENSP_mappings:2rga.A&PDB-ENSP_mappings:2rgb.A&PDB-ENSP_mappings:2rgc.A&PDB-ENSP_mappings:2rgd.A&PDB-ENSP_mappings:2rge.A&PDB-ENSP_mappings:2rgg.A&PDB-ENSP_mappings:2uzi.R&PDB-ENSP_mappings:2vh5.R&PDB-ENSP_mappings:2x1v.A&Gene3D:3.40.50.300&PDB-ENSP_mappings:3ddc.A&PDB-ENSP_mappings:3i3s.R&PDB-ENSP_mappings:3k8y.A&PDB-ENSP_mappings:3k9l.A&PDB-ENSP_mappings:3k9l.B&PDB-ENSP_mappings:3k9l.C&PDB-ENSP_mappings:3k9n.A&PDB-ENSP_mappings:3kkm.A&PDB-ENSP_mappings:3kkn.A&PDB-ENSP_mappings:3kud.A&PDB-ENSP_mappings:3l8y.A&PDB-ENSP_mappings:3l8z.A&PDB-ENSP_mappings:3lbh.A&PDB-ENSP_mappings:3lbi.A&PDB-ENSP_mappings:3lbn.A&PDB-ENSP_mappings:3lo5.A&PDB-ENSP_mappings:3lo5.C&PDB-ENSP_mappings:3lo5.E&PDB-ENSP_mappings:3oiu.A&PDB-ENSP_mappings:3oiv.A&PDB-ENSP_mappings:3oiw.A&PDB-ENSP_mappings:3rry.A&PDB-ENSP_mappings:3rrz.A&PDB-ENSP_mappings:3rs0.A&PDB-ENSP_mappings:3rs2.A&PDB-ENSP_mappings:3rs3.A&PDB-ENSP_mappings:3rs4.A&PDB-ENSP_mappings:3rs5.A&PDB-ENSP_mappings:3rs7.A&PDB-ENSP_mappings:3rsl.A&PDB-ENSP_mappings:3rso.A&PDB-ENSP_mappings:3tgp.A&PDB-ENSP_mappings:421p.A&PDB-ENSP_mappings:4dlr.A&PDB-ENSP_mappings:4dls.A&PDB-ENSP_mappings:4dlt.A&PDB-ENSP_mappings:4dlu.A&PDB-ENSP_mappings:4dlv.A&PDB-ENSP_mappings:4dlw.A&PDB-ENSP_mappings:4dlx.A&PDB-ENSP_mappings:4dly.A&PDB-ENSP_mappings:4dlz.A&PDB-ENSP_mappings:4efl.A&PDB-ENSP_mappings:4efm.A&PDB-ENSP_mappings:4efn.A&PDB-ENSP_mappings:4g0n.A&PDB-ENSP_mappings:4g3x.A&PDB-ENSP_mappings:4k81.B&PDB-ENSP_mappings:4k81.D&PDB-ENSP_mappings:4k81.F&PDB-ENSP_mappings:4k81.H&PDB-ENSP_mappings:4l9s.A&PDB-ENSP_mappings:4l9w.A&PDB-ENSP_mappings:4nyi.Q&PDB-ENSP_mappings:4nyi.R&PDB-ENSP_mappings:4nyj.Q&PDB-ENSP_mappings:4nyj.R&PDB-ENSP_mappings:4nym.Q&PDB-ENSP_mappings:4nym.R&PDB-ENSP_mappings:4q21.A&PDB-ENSP_mappings:4rsg.A&PDB-ENSP_mappings:4uru.R&PDB-ENSP_mappings:4urv.R&PDB-ENSP_mappings:4urw.R&PDB-ENSP_mappings:4urx.R&PDB-ENSP_mappings:4ury.R&PDB-ENSP_mappings:4urz.R&PDB-ENSP_mappings:4us0.R&PDB-ENSP_mappings:4us1.R&PDB-ENSP_mappings:4us2.R&PDB-ENSP_mappings:4xvq.A&PDB-ENSP_mappings:4xvr.A&PDB-ENSP_mappings:521p.A&PDB-ENSP_mappings:5b2z.A&PDB-ENSP_mappings:5b30.A&PDB-ENSP_mappings:5e95.A&PDB-ENSP_mappings:5p21.A&PDB-ENSP_mappings:5vbe.A&PDB-ENSP_mappings:5vbz.A&PDB-ENSP_mappings:5vbz.B&PDB-ENSP_mappings:5vbz.C&PDB-ENSP_mappings:5wdo.A&PDB-ENSP_mappings:5wdp.A&PDB-ENSP_mappings:5wdq.A&PDB-ENSP_mappings:5wfo.Q&PDB-ENSP_mappings:5wfo.R&PDB-ENSP_mappings:5wfp.Q&PDB-ENSP_mappings:5wfp.R&PDB-ENSP_mappings:5wfq.Q&PDB-ENSP_mappings:5wfq.R&PDB-ENSP_mappings:5wfr.Q&PDB-ENSP_mappings:5wfr.R&PDB-ENSP_mappings:5wpl.A&PDB-ENSP_mappings:5wpl.D&PDB-ENSP_mappings:5wpl.G&PDB-ENSP_mappings:5wpl.J&PDB-ENSP_mappings:5x9s.A&PDB-ENSP_mappings:5zc6.A&PDB-ENSP_mappings:621p.A&PDB-ENSP_mappings:6amb.A&PDB-ENSP_mappings:6axg.B&PDB-ENSP_mappings:6axg.D&PDB-ENSP_mappings:6axg.F&PDB-ENSP_mappings:6axg.H&PDB-ENSP_mappings:6axg.J&PDB-ENSP_mappings:6axg.L&PDB-ENSP_mappings:6bvi.A&PDB-ENSP_mappings:6bvi.C&PDB-ENSP_mappings:6bvj.A&PDB-ENSP_mappings:6bvj.C&PDB-ENSP_mappings:6bvk.A&PDB-ENSP_mappings:6bvk.C&PDB-ENSP_mappings:6bvl.A&PDB-ENSP_mappings:6bvl.C&PDB-ENSP_mappings:6bvm.A&PDB-ENSP_mappings:6bvm.C&PDB-ENSP_mappings:6cuo.A&PDB-ENSP_mappings:6cuo.C&PDB-ENSP_mappings:6cup.A&PDB-ENSP_mappings:6cup.C&PDB-ENSP_mappings:6cur.A&PDB-ENSP_mappings:6cur.C&PDB-ENSP_mappings:6d55.A&PDB-ENSP_mappings:6d55.C&PDB-ENSP_mappings:6d56.A&PDB-ENSP_mappings:6d56.C&PDB-ENSP_mappings:6d59.A&PDB-ENSP_mappings:6d59.C&PDB-ENSP_mappings:6d5e.A&PDB-ENSP_mappings:6d5e.C&PDB-ENSP_mappings:6d5g.A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4929727 +11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5529836 +11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=2042601 +11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1606211 +11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=5806386 +11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=2296976 +11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=1204346 +13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3144661 +13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=2600460 +13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=6055776 +13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8931114 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1641754 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=2111546 +14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=8909299 +14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=5808481 +16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=4837294 +16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=8568900 +16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=6432609 +16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=4545480 +16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=9606588 +16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=1348808 +16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2029848 +17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=3686245 +17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=7061584 +17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=2523161 +17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=1383811 +17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8675058 +18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=2054827 +19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=5001857 +20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1226805 +20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=7040058 +21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4689546 +22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=5138149 +X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5761324 diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/metadata.txt b/example_files/cgi_test_out/cgi_test_out.cgi_results/metadata.txt index f6f70b5..c20270b 100644 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/metadata.txt +++ b/example_files/cgi_test_out/cgi_test_out.cgi_results/metadata.txt @@ -1,5 +1,5 @@ -CGI query date: 2023-05-30 +CGI query date: 2024-09-09 API version: https://www.cancergenomeinterpreter.org/api/v1/ -Input mutations: /Users/students/Documents/work_dir/querynator/example_files/example.vcf +Input mutations: /home-link/zxmgc83/querynator/example_files/example.vcf Reference genome: GRCh37 Filtered out synonymous & low impact variants based on VEP annotation \ No newline at end of file diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/report.txt b/example_files/cgi_test_out/cgi_test_out.cgi_results/report.txt deleted file mode 100644 index 581e405..0000000 --- a/example_files/cgi_test_out/cgi_test_out.cgi_results/report.txt +++ /dev/null @@ -1,24 +0,0 @@ -============================== -=== Report of the analysis === -============================== - -Date: 2023-05-30 15:43:09 -CGI version: v23.05.3 - -Analysed mutations: 88 -Cancer type: CANCER -Dataset: input.tsv -Date: 2023-05-30 13:42:47 -Drivers: 81 -Drivers per sample: 81.0 -Id: cfa230edfac4ad4897c8 -Known drivers: 74 -Mutations per sample: 88.0 -Predicted drivers: 51 -Prescription complete: 387 -Prescription repurposing: 0 -Reference: hg19 -Samples: 1 -Samples without drivers: 0 -Title: CGI_query -User: forsky2@gmx.de diff --git a/example_files/cgi_test_out/cgi_test_out.cgi_results/summary.txt b/example_files/cgi_test_out/cgi_test_out.cgi_results/summary.txt new file mode 100644 index 0000000..e5a2849 --- /dev/null +++ b/example_files/cgi_test_out/cgi_test_out.cgi_results/summary.txt @@ -0,0 +1,29 @@ +=============================== +=== Summary of the analysis === +=============================== + +=== CGI-ANALYSIS === +Analysis Code: CGI_query +Analysis ID: 45474d2bd5ff2e2a81e3 +CGI version: v23.12.2 +Date: 2024-09-09 12:17:40 + +=== INPUT === +Analysed mutations: 88 +Analysed cnas: 0 +Analysed fusions: 0 +Total samples: 1 +Cancer type: BRCA +Reference genome: hg19 + +=== ALTERATIONS === +Driver mutations: 84 +Predicted and annotated drivers: 47 +Predicted drivers: 4 +Annotated drivers: 33 + +=== BIOMARKERS === +Biomarkers in cancer type: 33 +Biomarkers in cancer type - Level A: 1 +Biomarkers in other cancer type: 441 + diff --git a/example_files/cgi_test_out/vcf_files/cgi_test_out.filtered_variants.vcf b/example_files/cgi_test_out/vcf_files/cgi_test_out.filtered_variants.vcf index 3ab2abc..a4a1420 100644 --- a/example_files/cgi_test_out/vcf_files/cgi_test_out.filtered_variants.vcf +++ b/example_files/cgi_test_out/vcf_files/cgi_test_out.filtered_variants.vcf @@ -8,93 +8,93 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO -1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3744699 -1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7734825 -1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4990350 -1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4246169 -1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2388004 -1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1527345 -1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6270252 -1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3102092 -1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1746155 -1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=1313945 -1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3236047 -1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8700937 -1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5108921 -1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3380766 -1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2978136 -1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1606415 -1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9704791 -1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=9915688 -1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2437215 -1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5087472 -1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=7008926 -1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8708707 -1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=6671862 -1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=4711307 -1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=9112045 -1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=5288713 -1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=4722228 -1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=2491223 -1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=8899969 -1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=1538728 -1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4658766 -1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4115311 -1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8393236 -1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2428627 -1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4927461 -1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3564378 -1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=8880916 -1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7049806 -1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1923576 -1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3726287 -1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9040406 -1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9146704 -1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4683735 -1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5046267 -1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1004259 -1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2321116 -1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5441901 -1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2666427 -1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9188595 -1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7339764 -1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6610279 -7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1768798 -7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3892747 -9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3098257 -9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6921082 -10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8038054 -11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings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A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4587089 -11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5416609 -11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=5798338 -11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1782742 -11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=8563176 -11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=1154749 -11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=3561112 -13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2889115 -13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=4495364 -13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=5303302 -13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9336397 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=3156815 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=6394018 -14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=4696213 -14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1506234 -16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=7653957 -16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2970354 -16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2785555 -16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=7152809 -16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=4985405 -16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=9568332 -16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2012808 -17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=6850825 -17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=4829251 -17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=5327814 -17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=6431520 -17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=9949104 -18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=8014594 -19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=1501289 -20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1074175 -20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=8157695 -21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4326712 -22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=6578479 -X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3400584 +1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4580782 +1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3209279 +1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2558221 +1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8339125 +1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8043490 +1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9978383 +1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7720974 +1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8254898 +1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9718750 +1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=5554766 +1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5349064 +1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9546852 +1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1777257 +1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8667542 +1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4564661 +1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1009485 +1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4987929 +1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=1650397 +1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=5762771 +1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=2255776 +1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=2306693 +1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5480143 +1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=2983255 +1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=8033200 +1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=6094160 +1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1785099 +1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=3731083 +1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=5887615 +1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=9958612 +1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=7084227 +1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9141116 +1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9191168 +1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=5335782 +1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2316148 +1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9121210 +1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4545130 +1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1042289 +1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7689375 +1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4309104 +1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8335601 +1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9881851 +1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8212670 +1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6399676 +1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2637206 +1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4258223 +1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6055955 +1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8033165 +1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9789023 +1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5092183 +1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9037188 +1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9664066 +7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=3955283 +7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2574659 +9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2553161 +9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6761480 +10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=8917004 +11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings:1crp.A&PDB-ENSP_mappings:1crq.A&PDB-ENSP_mappings:1crr.A&PDB-ENSP_mappings:1ctq.A&PDB-ENSP_mappings:1gnp.A&PDB-ENSP_mappings:1gnq.A&PDB-ENSP_mappings:1gnr.A&PDB-ENSP_mappings:1he8.B&PDB-ENSP_mappings:1iaq.A&PDB-ENSP_mappings:1iaq.B&PDB-ENSP_mappings:1iaq.C&PDB-ENSP_mappings:1ioz.A&PDB-ENSP_mappings:1jah.A&PDB-ENSP_mappings:1jai.A&PDB-ENSP_mappings:1k8r.A&PDB-ENSP_mappings:1lf0.A&PDB-ENSP_mappings:1lf5.A&PDB-ENSP_mappings:1lfd.B&PDB-ENSP_mappings:1lfd.D&PDB-ENSP_mappings:1nvu.Q&PDB-ENSP_mappings:1nvu.R&PDB-ENSP_mappings:1nvv.Q&PDB-ENSP_mappings:1nvv.R&PDB-ENSP_mappings:1nvw.Q&PDB-ENSP_mappings:1nvw.R&PDB-ENSP_mappings:1nvx.Q&PDB-ENSP_mappings:1nvx.R&PDB-ENSP_mappings:1p2s.A&PDB-ENSP_mappings:1p2t.A&PDB-ENSP_mappings:1p2u.A&PDB-ENSP_mappings:1p2v.A&PDB-ENSP_mappings:1plj.A&PDB-ENSP_mappings:1plk.A&PDB-ENSP_mappings:1pll.A&PDB-ENSP_mappings:1q21.A&PDB-ENSP_mappings:1qra.A&PDB-ENSP_mappings:1rvd.A&PDB-ENSP_mappings:1wq1.R&PDB-ENSP_mappings:1xcm.A&PDB-ENSP_mappings:1xd2.A&PDB-ENSP_mappings:1xd2.B&PDB-ENSP_mappings:1xj0.A&PDB-ENSP_mappings:1zvq.A&PDB-ENSP_mappings:1zw6.A&PDB-ENSP_mappings:221p.A&PDB-ENSP_mappings:2c5l.A&PDB-ENSP_mappings:2c5l.B&PDB-ENSP_mappings:2ce2.X&PDB-ENSP_mappings:2cl0.X&PDB-ENSP_mappings:2cl6.X&PDB-ENSP_mappings:2cl7.X&PDB-ENSP_mappings:2clc.X&PDB-ENSP_mappings:2cld.X&PDB-ENSP_mappings:2evw.X&PDB-ENSP_mappings:2lcf.A&PDB-ENSP_mappings:2lwi.A&PDB-ENSP_mappings:2n42.A&PDB-ENSP_mappings:2n46.A&PDB-ENSP_mappings:2q21.A&PDB-ENSP_mappings:2quz.A&PDB-ENSP_mappings:2rga.A&PDB-ENSP_mappings:2rgb.A&PDB-ENSP_mappings:2rgc.A&PDB-ENSP_mappings:2rgd.A&PDB-ENSP_mappings:2rge.A&PDB-ENSP_mappings:2rgg.A&PDB-ENSP_mappings:2uzi.R&PDB-ENSP_mappings:2vh5.R&PDB-ENSP_mappings:2x1v.A&Gene3D:3.40.50.300&PDB-ENSP_mappings:3ddc.A&PDB-ENSP_mappings:3i3s.R&PDB-ENSP_mappings:3k8y.A&PDB-ENSP_mappings:3k9l.A&PDB-ENSP_mappings:3k9l.B&PDB-ENSP_mappings:3k9l.C&PDB-ENSP_mappings:3k9n.A&PDB-ENSP_mappings:3kkm.A&PDB-ENSP_mappings:3kkn.A&PDB-ENSP_mappings:3kud.A&PDB-ENSP_mappings:3l8y.A&PDB-ENSP_mappings:3l8z.A&PDB-ENSP_mappings:3lbh.A&PDB-ENSP_mappings:3lbi.A&PDB-ENSP_mappings:3lbn.A&PDB-ENSP_mappings:3lo5.A&PDB-ENSP_mappings:3lo5.C&PDB-ENSP_mappings:3lo5.E&PDB-ENSP_mappings:3oiu.A&PDB-ENSP_mappings:3oiv.A&PDB-ENSP_mappings:3oiw.A&PDB-ENSP_mappings:3rry.A&PDB-ENSP_mappings:3rrz.A&PDB-ENSP_mappings:3rs0.A&PDB-ENSP_mappings:3rs2.A&PDB-ENSP_mappings:3rs3.A&PDB-ENSP_mappings:3rs4.A&PDB-ENSP_mappings:3rs5.A&PDB-ENSP_mappings:3rs7.A&PDB-ENSP_mappings:3rsl.A&PDB-ENSP_mappings:3rso.A&PDB-ENSP_mappings:3tgp.A&PDB-ENSP_mappings:421p.A&PDB-ENSP_mappings:4dlr.A&PDB-ENSP_mappings:4dls.A&PDB-ENSP_mappings:4dlt.A&PDB-ENSP_mappings:4dlu.A&PDB-ENSP_mappings:4dlv.A&PDB-ENSP_mappings:4dlw.A&PDB-ENSP_mappings:4dlx.A&PDB-ENSP_mappings:4dly.A&PDB-ENSP_mappings:4dlz.A&PDB-ENSP_mappings:4efl.A&PDB-ENSP_mappings:4efm.A&PDB-ENSP_mappings:4efn.A&PDB-ENSP_mappings:4g0n.A&PDB-ENSP_mappings:4g3x.A&PDB-ENSP_mappings:4k81.B&PDB-ENSP_mappings:4k81.D&PDB-ENSP_mappings:4k81.F&PDB-ENSP_mappings:4k81.H&PDB-ENSP_mappings:4l9s.A&PDB-ENSP_mappings:4l9w.A&PDB-ENSP_mappings:4nyi.Q&PDB-ENSP_mappings:4nyi.R&PDB-ENSP_mappings:4nyj.Q&PDB-ENSP_mappings:4nyj.R&PDB-ENSP_mappings:4nym.Q&PDB-ENSP_mappings:4nym.R&PDB-ENSP_mappings:4q21.A&PDB-ENSP_mappings:4rsg.A&PDB-ENSP_mappings:4uru.R&PDB-ENSP_mappings:4urv.R&PDB-ENSP_mappings:4urw.R&PDB-ENSP_mappings:4urx.R&PDB-ENSP_mappings:4ury.R&PDB-ENSP_mappings:4urz.R&PDB-ENSP_mappings:4us0.R&PDB-ENSP_mappings:4us1.R&PDB-ENSP_mappings:4us2.R&PDB-ENSP_mappings:4xvq.A&PDB-ENSP_mappings:4xvr.A&PDB-ENSP_mappings:521p.A&PDB-ENSP_mappings:5b2z.A&PDB-ENSP_mappings:5b30.A&PDB-ENSP_mappings:5e95.A&PDB-ENSP_mappings:5p21.A&PDB-ENSP_mappings:5vbe.A&PDB-ENSP_mappings:5vbz.A&PDB-ENSP_mappings:5vbz.B&PDB-ENSP_mappings:5vbz.C&PDB-ENSP_mappings:5wdo.A&PDB-ENSP_mappings:5wdp.A&PDB-ENSP_mappings:5wdq.A&PDB-ENSP_mappings:5wfo.Q&PDB-ENSP_mappings:5wfo.R&PDB-ENSP_mappings:5wfp.Q&PDB-ENSP_mappings:5wfp.R&PDB-ENSP_mappings:5wfq.Q&PDB-ENSP_mappings:5wfq.R&PDB-ENSP_mappings:5wfr.Q&PDB-ENSP_mappings:5wfr.R&PDB-ENSP_mappings:5wpl.A&PDB-ENSP_mappings:5wpl.D&PDB-ENSP_mappings:5wpl.G&PDB-ENSP_mappings:5wpl.J&PDB-ENSP_mappings:5x9s.A&PDB-ENSP_mappings:5zc6.A&PDB-ENSP_mappings:621p.A&PDB-ENSP_mappings:6amb.A&PDB-ENSP_mappings:6axg.B&PDB-ENSP_mappings:6axg.D&PDB-ENSP_mappings:6axg.F&PDB-ENSP_mappings:6axg.H&PDB-ENSP_mappings:6axg.J&PDB-ENSP_mappings:6axg.L&PDB-ENSP_mappings:6bvi.A&PDB-ENSP_mappings:6bvi.C&PDB-ENSP_mappings:6bvj.A&PDB-ENSP_mappings:6bvj.C&PDB-ENSP_mappings:6bvk.A&PDB-ENSP_mappings:6bvk.C&PDB-ENSP_mappings:6bvl.A&PDB-ENSP_mappings:6bvl.C&PDB-ENSP_mappings:6bvm.A&PDB-ENSP_mappings:6bvm.C&PDB-ENSP_mappings:6cuo.A&PDB-ENSP_mappings:6cuo.C&PDB-ENSP_mappings:6cup.A&PDB-ENSP_mappings:6cup.C&PDB-ENSP_mappings:6cur.A&PDB-ENSP_mappings:6cur.C&PDB-ENSP_mappings:6d55.A&PDB-ENSP_mappings:6d55.C&PDB-ENSP_mappings:6d56.A&PDB-ENSP_mappings:6d56.C&PDB-ENSP_mappings:6d59.A&PDB-ENSP_mappings:6d59.C&PDB-ENSP_mappings:6d5e.A&PDB-ENSP_mappings:6d5e.C&PDB-ENSP_mappings:6d5g.A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=4929727 +11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=5529836 +11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=2042601 +11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1606211 +11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=5806386 +11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=2296976 +11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=1204346 +13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3144661 +13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=2600460 +13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=6055776 +13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8931114 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1641754 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=2111546 +14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=8909299 +14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=5808481 +16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=4837294 +16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=8568900 +16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=6432609 +16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=4545480 +16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=9606588 +16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=1348808 +16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=2029848 +17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=3686245 +17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=7061584 +17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=2523161 +17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=1383811 +17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8675058 +18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=2054827 +19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=5001857 +20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=1226805 +20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=7040058 +21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=4689546 +22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=5138149 +X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5761324 diff --git a/example_files/civic_test_out/civic_test_out.civic_results.tsv b/example_files/civic_test_out/civic_test_out.civic_results.tsv index 6b63bae..14415a7 100644 --- a/example_files/civic_test_out/civic_test_out.civic_results.tsv +++ b/example_files/civic_test_out/civic_test_out.civic_results.tsv @@ -1,18 +1,19 @@ chr start stop ref alt querynator_id variant_name variant_aliases variant_type variant_clinvar_entries variant_entrez_id variant_entrez_name variant_hgvs_expressions variant_groups gene_name gene_aliases gene_description gene_entrez_id gene_source mol_profile_name mol_profile_definition mol_profile_score assertion_name assertion_acmg_codes assertion_acmg_codes_description assertion_amp_level assertion_direction assertion_type assertion_description assertion_disease_name assertion_disease_doid assertion_disease_url assertion_disease_aliases assertion_phenotypes assertion_significance assertion_status assertion_summary assertion_therapies_name assertion_therapies_ncit_id assertion_therapies_aliases assertion_therapies_interaction_type assertion_variant_origin evidence_name evidence_description evidence_disease evidence_level evidence_support evidence_type evidence_phenotypes evidence_rating evidence_significance evidence_source evidence_status evidence_therapies evidence_therapy_interaction_type -1 11184573 11184573 G T 4454314 S2215Y SER2215TYR Missense Variant 376129 2475 MTOR ENST00000361445.4:c.6644C>A, NC_000001.10:g.11184573G>T, NM_004958.3:c.6644C>A, NP_004949.1:p.Ser2215Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR S2215Y 2.0 -1 11184580 11184580 G A 7962649 P2213S PRO2213SER Missense Variant, Gain Of Function Variant 376358 2475 MTOR ENST00000361445.4:c.6637C>T, NC_000001.10:g.11184580G>A, NM_004958.3:c.6637C>T, NP_004949.1:p.Pro2213Ser MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR P2213S 3.0 -1 11187094 11187094 G T 4231866 F2108L PHE2108LEU Missense Variant NONE FOUND 2475 MTOR ENST00000361445.4:c.6324C>A, NC_000001.10:g.11187094G>T MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR F2108L 16.5 -1 11187857 11187857 C T 3041185 E2014K Missense Variant 376131 2475 MTOR NM_004958.4:c.6040G>A, NC_000001.10:g.11187857C>T, NP_004949.1:p.Glu2014Lys MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR E2014K AND MTOR E2419K 0.0 -1 11188519 11188519 G A 1437984 H1968Y HIS1968TYR Missense Variant, Gain Of Function Variant 376357 2475 MTOR ENST00000361445.4:c.5902C>T, NC_000001.10:g.11188519G>A, NM_004958.3:c.5902C>T, NP_004949.1:p.His1968Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR H1968Y 3.0 -1 11217230 11217230 C T 1568206 C1483Y CYS1483TYR Missense Variant 376453 2475 MTOR ENST00000361445.4:c.4448G>A, NC_000001.10:g.11217230C>T, NM_004958.3:c.4448G>A, NP_004949.1:p.Cys1483Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, Curr Cancer Drug Targets, PubMed: Guertin et al., 2007, Cancer Cell, PubMed: Porta et al., 2014, Front Oncol MTOR C1483Y 2.0 -1 11856378 11856378 G A 3099550 A222V RS1801133, C677T, ALA222VAL Missense Variant 3520 4524 MTHFR NM_005957.4:c.665C>T, NP_005948.3:p.Ala222Val, ENST00000376592.1:c.665G>A, NC_000001.10:g.11856378G>A MTHFR MTHFR 4524 MTHFR A222V 55.0 -1 36933434 36933434 G A 1843490 T618I THR618ILE Missense Variant 208339 1441 CSF3R NP_724781.1:p.Thr618Ile, NM_156039.3:c.1853C>T, ENST00000373103.1:c.1853G>A, NC_000001.10:g.36933434G>A, NC_000001.11:g.36467833G>A CSF3R CD114, CSF3R, GCSFR, SCN7 1441 CSF3R T618I 14.0 -1 115256528 115256528 T G 8103256 Q61H RS121913255, GLN61HIS Missense Variant 375871 4893 NRAS NM_002524.4:c.183A>C, NP_002515.1:p.Gln61His, NC_000001.10:g.115256528T>G, ENST00000369535.4:c.183A>C NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61H 5.0 -1 115256529 115256529 T A 4234228 Q61L GLN61LEU, RS11554290 Missense Variant 375874 4893 NRAS NP_002515.1:p.Gln61Leu, NC_000001.10:g.115256529T>A, NM_002524.4:c.182A>T, ENST00000369535.4:c.182A>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61L NRAS Q61 mutations have been found in multiple myeloma, gastrointestinal stromal tumors, melanoma, and others. A melanoma patient harboring a mutation at this locus responded to treatment with the akylating agent temozolomide. However, in colorectal cancer patients, mutations at this locus have been shown to confer resistance to cetuximab. The prognostic impact of mutations at this locus is currently under study. 12.5 -1 115256529 115256529 T C 2952738 Q61R GLN61ARG, RS11554290 Missense Variant 13900 4893 NRAS NM_002524.4:c.182A>G, NP_002515.1:p.Gln61Arg, NC_000001.10:g.115256529T>C, ENST00000369535.4:c.182A>G NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61R NRAS Q61 mutations have been found in multiple myeloma, gastrointestinal stromal tumors, melanoma, and others. A melanoma patient harboring a mutation at this locus responded to treatment with the akylating agent temozolomide. However, in colorectal cancer patients, mutations at this locus have been shown to confer resistance to cetuximab. The prognostic impact of mutations at this locus is currently under study. 10.0 -1 115256530 115256530 G T 1787986 Q61K GLN61LYS, RS121913254 Missense Variant 73058 4893 NRAS NM_002524.4:c.181C>A, NP_002515.1:p.Gln61Lys, NC_000001.10:g.115256530G>T, ENST00000369535.4:c.181C>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61K 24.5 -1 115258744 115258744 C T 5465086 G13D GLY13ASP, RS121434596 Missense Variant 13901 4893 NRAS NM_002524.4:c.38G>A, NP_002515.1:p.Gly13Asp, NC_000001.10:g.115258744C>T, ENST00000369535.4:c.38G>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13D While the NRAS G12 region is a widely studied recurrent region in cancer, its impact on clinical action is still debated. 5.0 -1 115258745 115258745 C A 4337967 G13C RS121434595, GLY13CYS Missense Variant 40471 4893 NRAS NM_002524.4:c.37G>T, NP_002515.1:p.Gly13Cys, NC_000001.10:g.115258745C>A, ENST00000369535.4:c.37G>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13C 0.0 -1 115258745 115258745 C G 7718445 G13R RS121434595, GLY13ARG Missense Variant 13899 4893 NRAS NM_002524.4:c.37G>C, NP_002515.1:p.Gly13Arg, NC_000001.10:g.115258745C>G, ENST00000369535.4:c.37G>C NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13R 5.0 -1 115258747 115258747 C A 5160928 G12V RS121913237 Missense Variant 40470 4893 NRAS NM_002524.4:c.35G>T, NP_002515.1:p.Gly12Val, NC_000001.10:g.115258747C>A, ENST00000369535.4:c.35G>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G12V 0.0 -1 115258747 115258747 C T 7082271 G12D RS121913237, GLY12ASP Missense Variant 39648 4893 NRAS NM_002524.4:c.35G>A, NP_002515.1:p.Gly12Asp, NC_000001.10:g.115258747C>T, ENST00000369535.4:c.35G>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G12D 7.5 +1 11184573 11184573 G T 6414403 S2215Y SER2215TYR Missense Variant 376129 2475 MTOR ENST00000361445.4:c.6644C>A, NC_000001.10:g.11184573G>T, NM_004958.3:c.6644C>A, NP_004949.1:p.Ser2215Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR S2215Y 2.0 EID1319 Cell lines with various putative activating mutations were tested for sensitivity to rapamycin. The cell line JHUEM7 with the MTOR mutation S2215Y was hypersensitive to rapamycin treatment (IC50 of 0.23 nmol/L). Endometrial Adenocarcinoma D SUPPORTS PREDICTIVE 2 SENSITIVITYRESPONSE PubMed: Grabiner et al., 2014 accepted Sirolimus +1 11184580 11184580 G A 9920047 P2213S PRO2213SER Missense Variant, Gain Of Function Variant 376358 2475 MTOR ENST00000361445.4:c.6637C>T, NC_000001.10:g.11184580G>A, NM_004958.3:c.6637C>T, NP_004949.1:p.Pro2213Ser MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR P2213S 3.0 EID722 In a cell line (HEK293T) with expression of H1968Y or P2213S mTOR mutations, LY294002 and AZD5363 were more effective than temsirolimus or BYL719 in suppressing cell growth. Melanoma D SUPPORTS PREDICTIVE 3 SENSITIVITYRESPONSE PubMed: Kong et al., 2016 accepted Capivasertib+PI3K/BET Inhibitor LY294002 COMBINATION +1 11187094 11187094 G T 7774031 F2108L PHE2108LEU Missense Variant NONE FOUND 2475 MTOR ENST00000361445.4:c.6324C>A, NC_000001.10:g.11187094G>T MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR F2108L 16.5 EID1110,EID1543 The pretreatment tumor contained a somatic nonsense mutation (Q1178*) in the tumor-suppressor gene TSC2 that inactivates the gene, allowing for activation of the mTOR pathway and resulting in sensitivity to mTOR inhibition by everolimus. The patient received a sustained response to everolimus for 18 months, after which time resistance developed. The resistant tumor had a somatic mutation in MTOR (F2108L), that was not detected in the pretreatment tumor.|MCF-7 breast cancer cell line was exposed to mTOR inhibitors AZD8055 or rapamycin until resistance developed. Deep sequencing revealed an MTOR F2108L mutation in rapamycin-resistant clones (RR2 cells). Downstream signalling was independent of inhibitor presence in these clones and expression of the mutations in MDA-MB-468 cells led to resistance. Thyroid Gland Carcinoma,Breast Cancer C,D SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE , 5,4 RESISTANCE,RESISTANCE PubMed: Wagle et al., 2014|PubMed: Rodrik-Outmezguine et al., 2016 accepted,accepted Everolimus,Sirolimus , +1 11187857 11187857 C T 6478070 E2014K Missense Variant 376131 2475 MTOR NM_004958.4:c.6040G>A, NC_000001.10:g.11187857C>T, NP_004949.1:p.Glu2014Lys MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR E2014K AND MTOR E2419K 5.0 EID1438 "A phase 1 clinical trial identified a patient with chemotherapy-refractory urothelial carcinoma who had complete radiographic response lasting 14 months after combined everolimus and pazopanib treatment. This patient was exome sequenced and two mutations co-occurring in MTOR were identified. Expression of these mutations in HEK293T cells demonstrated these were activating mutations. The authors propose that these two activating mutations are the reason for the dramatic response to mTOR inhibition and considered them as ""biologically plausible"" to confer sensitivity to everolimus." Transitional Cell Carcinoma C SUPPORTS PREDICTIVE 2 SENSITIVITYRESPONSE PubMed: Wagle et al., 2014 accepted Pazopanib+Everolimus COMBINATION +1 11188519 11188519 G A 1030844 H1968Y HIS1968TYR Missense Variant, Gain Of Function Variant 376357 2475 MTOR ENST00000361445.4:c.5902C>T, NC_000001.10:g.11188519G>A, NM_004958.3:c.5902C>T, NP_004949.1:p.His1968Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR H1968Y 3.0 EID713,EID721 In a cell line (HEK293T) with expression of H1968Y or P2213S mTOR mutations, LY294002 and AZD5363 were more effective than temsirolimus or BYL719 in suppressing cell growth.|In a cell line with expression of H1968Y or P2213S mTOR mutations, LY294002 and AZD5363 were more effective than temsirolimus or BYL719 in suppressing cell growth. Melanoma,Melanoma D,D SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE , 3,3 SENSITIVITYRESPONSE,SENSITIVITYRESPONSE PubMed: Kong et al., 2016|PubMed: Kong et al., 2016 accepted,rejected PI3K/BET Inhibitor LY294002+Capivasertib,Capivasertib SUBSTITUTES, +1 11217230 11217230 C T 7812685 C1483Y CYS1483TYR Missense Variant 376453 2475 MTOR ENST00000361445.4:c.4448G>A, NC_000001.10:g.11217230C>T, NM_004958.3:c.4448G>A, NP_004949.1:p.Cys1483Tyr MTOR FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1, SKS mTOR deregulation has been observed in many cancer types. As a part of the PI3K/Akt pathway, there is a broad interest in mTOR biology across cancer types. mTOR inhibition has been investigated for nearly a decade. Everolimus, temsirolimus and zotarolimus are three of the more commonly used mTOR inhibitors used in clinical treatment today, with modest success. 2475 PubMed: Baldo et al., 2008, PubMed: Guertin et al., 2007, PubMed: Porta et al., 2014 MTOR C1483Y 2.0 EID1320 Cell lines with various putative activating mutations were tested for sensitivity to rapamycin. The cell line MOLT16, with MTOR mutation C1483Y was hypersensitive to rapamycin treatment (IC50 of 0.75 nmol/L). T-cell Acute Lymphoblastic Leukemia D SUPPORTS PREDICTIVE 2 SENSITIVITYRESPONSE PubMed: Grabiner et al., 2014 accepted Sirolimus +1 11856378 11856378 G A 4866096 A222V RS1801133, C677T, ALA222VAL Missense Variant 3520 4524 MTHFR NM_005957.4:c.665C>T, NP_005948.3:p.Ala222Val, ENST00000376592.1:c.665G>A, NC_000001.10:g.11856378G>A MTHFR MTHFR 4524 MTHFR A222V 55.0 EID1756,EID1757,EID669 Study of 1817 PCa cases and 2026 cancer free controls to clarify the association of (MTHFR)c.677C>T (and c.1298A>C ) of pancreatic cancer risk in a population of Han Chinese in Shanghai. Results indicated a lower risk for the heterozygous CT genotype and homozygous TT genotype carriers of (MTHFR)c.677C>T which had a significantly lower risk of developing pancreatic cancer compared with the wild-type CC genotype.|Patients with the wild type (C/C) MTHFR gene are 2.91 times (95% CI: [1.23, 6.89]) more likely to have a positive response to neoadjuvant CRT and 3.25 times more likely not to experience relapse (95% CI: [1.37, 7.72]) than patients with the heterozygous MTHFR [rs1801133 (C>T)] mutation or the homzygous (T/T).|The MTHFR C667T variant was associated with significantly lower relapse-free survival and overall survival in stomach cancer patients treated with 5-Fluorouracil-based therapies. 116 Chinese patients with histologically confirmed gastric cancer were used in this study, and all patients had radical surgery before treatment. Pancreatic Cancer,Rectum Cancer,Stomach Cancer B,B,B SUPPORTS,SUPPORTS,SUPPORTS PREDISPOSING,PREDICTIVE,PREDICTIVE ,, 4,4,3 PROTECTIVENESS,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE PubMed: Wu et al., 2016|PubMed: Nikas et al., 2015|PubMed: Huang et al., 2009 accepted,accepted,accepted ,Fluorouracil,Fluorouracil ,, +1 36933434 36933434 G A 3094777 T618I THR618ILE Missense Variant 208339 1441 CSF3R NP_724781.1:p.Thr618Ile, NM_156039.3:c.1853C>T, ENST00000373103.1:c.1853G>A, NC_000001.10:g.36933434G>A, NC_000001.11:g.36467833G>A CSF3R CD114, CSF3R, GCSFR, SCN7 1441 CSF3R T618I 14.0 EID9072,EID6381,EID6380 Tarlock et al. (2020) report the incidence of CSF3R mutations in a large cohort of pediatric AML; CSF3R mutations almost always cooccured mutually exclusively with either CEBPA variants or t(8;21). The study demonstrated that CSF3R mutations had significant and variable prognostic effects when cooccurring with t(8;21) or CEBPA variants. Of note, those who carried CEBPA variants (CEBPA+) with a CSF3R variant (dual CSF3R+/CEBPA+) patients experienced poor outcomes with chemotherapy ((n = 12), EFS of 25% ± 25% for CSF3R+/CEBPA+ vs. (n= 18), 83% ± 18% for CSF3R+/t(8;21) patients (P < .001)) and very high relapse rates ((n = 12), RR of 75% ± 28% for CSF3R+/CEBPA+ vs. (n =13), 15% ± 21% forCSF3R+/t(8;21) (P = .003)). The CSF3R+/CEBPA+ patients had significantly higher RR and inferior EFS, OS was (n=12) 73% ± 26%, lower than that reported for the CSF3R+/t(8;21) patients with a reported OS of (n =18) 100% ± 0% (P = .026).|Case report of a patient treated with ruxolitinib, an FDA-approved JAK1/2 inhibitor, which resulted in dramatic improvement of his blood counts. He also had significant reduction of spleen volume and constitutional symptoms.|Demonstrates that activating mutations in CSF3R are sufficient to drive a myeloproliferative disorder resembling aCML and CNL that is sensitive to pharmacologic JAK inhibition. Acute Myeloid Leukemia,Chronic Neutrophilic Leukemia,Chronic Neutrophilic Leukemia B,C,D SUPPORTS,SUPPORTS,SUPPORTS PROGNOSTIC,PREDICTIVE,PREDICTIVE ,, 4,4,4 POOR_OUTCOME,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE PubMed: Tarlock et al., 2020|PubMed: Dao et al., 2014|PubMed: Fleischman et al., 2013 submitted,accepted,accepted ,Ruxolitinib,Ruxolitinib ,, +1 115256528 115256528 T G 1722183 Q61H RS121913255, GLN61HIS Missense Variant 375871 4893 NRAS NM_002524.4:c.183A>C, NP_002515.1:p.Gln61His, NC_000001.10:g.115256528T>G, ENST00000369535.4:c.183A>C NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61H 5.0 EID7333,EID2172,EID2173,EID2175,EID2176,EID3823,EID3690,EID2171,EID2174,EID7332 The researchers quantified ctDNA in time-intervals during the treatment of 6 patients with stage IV melanoma. The patient carrying the NRAS Q61H mutation was started on ipilimumab and responded well. As seen in figure 4, treatment led to a significant reduction in tumor burden, falling RECIST scores, and a rapid (86%) decline in ctDNA levels which correlates to a positive treatment response.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In chemotherapy-resistant colorectal cancer patients treated with cetuximab-based therapy, NRAS mutations were associated with a lower objective response (7.7% vs. 38.1%, odds ratio (OR):0.14, 95% CI:0.007-0.70, P=0.013, univariate analysis; OR: 0.105, 95% CI:0.0056-0.582, P=0.0065, multivariate analysis) compared to wildtype NRAS patients. Patients with NRAS mutations but no KRAS mutations experienced reduced overall survival (HR:1.98, 95% CI:1.08-3.62, P=0.042, multivariate analysis).|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In chemotherapy-resistant colorectal cancer patients treated with cetuximab-based therapy, NRAS mutations were associated with a lower objective response (7.7% vs. 38.1%, odds ratio (OR):0.14, 95% CI:0.007-0.70, P=0.013, univariate analysis; OR: 0.105, 95% CI:0.0056-0.582, P=0.0065, multivariate analysis) compared to wildtype NRAS patients. Patients with NRAS mutations but no KRAS mutations experienced reduced overall survival (HR:1.98, 95% CI:1.08-3.62, P=0.042, multivariate analysis).|In a retrospective study of 368 chemotherapy-refractory metastatic colorectal cancer, patients with a NRAS mutation (n=13) treated with cetuximab in combination with standard chemotherapy were associated with a lower response rate (7.7% vs 38.1% , OR: 0.14, 95% CI: 0.007-0.70, P=0.013) as compared to patients with wild-type NRAS (n=289).|One patient participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had a tumor which harbored NRAS Q61H was wildtype for KRAS, BRAF and PIK3CA. This patient was was a 73 year old male treated with cetuximab and irinotecan as 4th line therapy who experienced progressive disease and had PFS of 10 weeks and OS of 36 weeks.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|Mice that carried the Q61H variant had Malignant Pleural Mesothelioma and Lewis Lung Carincoma. The malignant cells where taken and each cell line was shown to readily promote lung colonization compared to NRAS WT cells. The NRAS variants drove lung metastasis via interaction with lung endothelial (CXCR1) and myeloid (CXCR2) receptors, which were required for colonization. However, the receptors were not required for tumor growth. Melanoma,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Malignant Pleural Mesothelioma B,C,C,C,C,C,C,D,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,DIAGNOSTIC ,,,,,,,,, 4,,,,,,2,,,3 SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,POSITIVE PubMed: Tsao et al., 2015|PubMed: Schubbert et al., 2007|PubMed: De Roock et al., 2010|PubMed: Schubbert et al., 2007|PubMed: De Roock et al., 2010|PubMed: De Roock et al., 2010|PubMed: De Roock et al., 2010|PubMed: Migliardi et al., 2012|PubMed: Migliardi et al., 2012|PubMed: Giannou et al., 2017 submitted,rejected,rejected,rejected,rejected,rejected,accepted,submitted,submitted,submitted Ipilimumab,Dactolisib,Dactolisib,Selumetinib,Selumetinib,Cetuximab,Cetuximab+Irinotecan,Dactolisib,Selumetinib, ,,,,,,COMBINATION,,, +1 115256529 115256529 T A 6124658 Q61L GLN61LEU, RS11554290 Missense Variant 375874 4893 NRAS NP_002515.1:p.Gln61Leu, NC_000001.10:g.115256529T>A, NM_002524.4:c.182A>T, ENST00000369535.4:c.182A>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61L NRAS Q61 mutations have been found in multiple myeloma, gastrointestinal stromal tumors, melanoma, and others. A melanoma patient harboring a mutation at this locus responded to treatment with the akylating agent temozolomide. However, in colorectal cancer patients, mutations at this locus have been shown to confer resistance to cetuximab. The prognostic impact of mutations at this locus is currently under study. 12.5 EID2179,EID2182,EID3825,EID2181,EID22,EID2177,EID2180,EID3826,EID3018 NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In a retrospective study of 44 malignant melanoma patients, NRAS Q61L was associated with acquired resistance to vemurafenib monotherapy in one patient with disease progressive tumors harboring NRAS Q61L and BRAF V600E (a known sensitizing mutation to vemurafenib) co-mutations, but no other genetic alterations.|Two patients participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had tumors which harbored NRAS Q61L and were wildtype for KRAS, BRAF and PIK3CA. Both patients experienced stable disease, which the authors classified as non-response. The two patients whose tumors harbored NRAS Q61L included a 53 year old female treated with cetuximab and irinotecan as a 6th line treatment who had PFS of 12 weeks and OS of 25 weeks; and a 64 year old female treated with cetuximab and ironotecan as a 3rd line therapy who had PFS of 12 weeks and OS of 46 weeks.|In a melanoma patient with NRAS Q61L mutation, treatment with temozolomide resulted in disease free survival of 14 months.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In an in vitro study, the YULOVY and YUFULO cell lines expressing NRAS Q61L were associated with reduced sensitivity to vemurafenib (PLX4032) treatment, as compared to cells expressing wild-type BRAF. Resistance was determined by assessing cellular proliferation.|Of the 4,562 patients with lung cancers, 30 showed NRAS mutations, which corresponded to 9 different amino acid substitutions. Cell lines were developed for 6 of these mutations and 5/6 were sensitivity to MEK inhibitors selumetinib and trametinib. One of the cell lines was Q61L, two of the cel lines were Q61R, and three of the cell lines were Q61K. Colorectal Cancer,Colorectal Cancer,Melanoma,Colorectal Cancer,Melanoma,Colorectal Cancer,Colorectal Cancer,Melanoma,Lung Non-small Cell Carcinoma C,C,C,C,C,D,D,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,,,,,,, ,,,3,2,,,,2 SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,SENSITIVITYRESPONSE PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: Shi et al., 2014|PubMed: De Roock et al., 2010|PubMed: Soon et al., 2011|PubMed: Migliardi et al., 2012|PubMed: Migliardi et al., 2012|PubMed: Halaban et al., 2010|PubMed: Ohashi et al., 2013 rejected,rejected,submitted,accepted,accepted,submitted,submitted,submitted,submitted Dactolisib,Selumetinib,Vemurafenib,Cetuximab+Irinotecan,Temozolomide,Dactolisib,Selumetinib,Vemurafenib,Trametinib+Selumetinib ,,,COMBINATION,,,,,SUBSTITUTES +1 115256529 115256529 T C 5697943 Q61R GLN61ARG, RS11554290 Missense Variant 13900 4893 NRAS NM_002524.4:c.182A>G, NP_002515.1:p.Gln61Arg, NC_000001.10:g.115256529T>C, ENST00000369535.4:c.182A>G NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61R NRAS Q61 mutations have been found in multiple myeloma, gastrointestinal stromal tumors, melanoma, and others. A melanoma patient harboring a mutation at this locus responded to treatment with the akylating agent temozolomide. However, in colorectal cancer patients, mutations at this locus have been shown to confer resistance to cetuximab. The prognostic impact of mutations at this locus is currently under study. 10.0 EID2185,EID2188,EID3829,EID23,EID2184,EID2186,EID3828,EID3830,EID3831,EID3019 NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In a retrospective study of 44 malignant melanoma patients, NRAS Q61R was associated with acquired resistance to vemurafenib monotherapy in three patients with disease progressive tumors harboring NRAS Q61R and BRAF V600E (a known sensitizing mutation to vemurafenib) co-mutations, but no other genetic alterations.|In a melanoma patient with Q61R mutation, treatment with temozolomide resulted in overall survival of 16 months.|Five patients participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had tumors which harbored NRAS Q61R and were wildtype for KRAS, BRAF and PIK3CA. Overall, one patient experienced stable disease, and the other four experienced progressive disease.The five patients whose tumors harbored NRAS Q61R included a 65 year old male treated with cetuximab monotherapy as a 3rd line treatment who experienced progressive disease and had PFS of 6 weeks and OS of 41 weeks; a 47 year old female treated with cetuximab and ironotecan as a 5th line therapy who experienced progressive disease and had PFS of 4 weeks and OS of 10 weeks; a 60 year old female treated with cetuximab and ironotecan as a 3rd line therapy who experienced stable disease and had PFS of 24 weeks and OS of 38 weeks; a 47 year old female treated with cetuximab and ironotecan as a 3rd line therapy who experienced progressive disease and had PFS of 14 weeks and OS of 18 weeks; and a 77 year old male treated with cetuximab monotherapy as a 1st line therapy who experienced progressive disease and had PFS of 7 weeks and OS of 67 weeks.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In an in vitro study of single-cell clones derived from a cutaneous melanoma patient expressing a BRAF V600E mutation (a known sensitizing mutation to vemurafenib) and NRAS Q61R co-mutations, NRAS Q61R mutation was associated with resistance to vemurafenib treatment (IC50: >1000 nmol/L). Resistance was determined by assessing cell viability.|In an in vitro study, a HTH7 cell line expressing NRAS Q61R demonstrated reduced sensitivity to vemurafenib treatment, compared to BRAF V600E expressing cells (8505C, SWI1736, BHT101 and BCPAP). Sensitivity was determined by assessing cell proliferation (HTH7, EC50: greater or equal to 1000nM vs. 8505C, EC50: 57nM; SWI1736, EC50: 29nM; BHT101, EC50: 97nM; BCPAP, EC50: 78nM), and MAPK1 and MAP2K1 phosphorylation.|Of the 4,562 patients with lung cancers, 30 showed NRAS mutations, which corresponded to 9 different amino acid substitutions. Cell lines were developed for 6 of these mutations and 5/6 were sensitivity to MEK inhibitors selumetinib and trametinib. One of the cell lines was Q61L, two of the cell lines were Q61R, and three of the cell lines were Q61K. Colorectal Cancer,Colorectal Cancer,Melanoma,Melanoma,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Skin Melanoma,Thyroid Gland Carcinoma,Lung Non-small Cell Carcinoma C,C,C,C,C,D,D,D,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,,,,,,,, ,,,2,2,,,,,2 SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,SENSITIVITYRESPONSE,RESISTANCE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: Shi et al., 2014|PubMed: Soon et al., 2011|PubMed: De Roock et al., 2010|PubMed: Migliardi et al., 2012|PubMed: Migliardi et al., 2012|PubMed: Romano et al., 2013|PubMed: Salerno et al., 2010|PubMed: Ohashi et al., 2013 rejected,rejected,submitted,accepted,accepted,submitted,submitted,submitted,submitted,submitted Selumetinib,Dactolisib,Vemurafenib,Temozolomide,Cetuximab,Dactolisib,Cetuximab,Vemurafenib,Vemurafenib,Trametinib+Selumetinib ,,,,,,,,,SUBSTITUTES +1 115256530 115256530 G T 5972779 Q61K GLN61LYS, RS121913254 Missense Variant 73058 4893 NRAS NM_002524.4:c.181C>A, NP_002515.1:p.Gln61Lys, NC_000001.10:g.115256530G>T, ENST00000369535.4:c.181C>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS Q61K 24.5 EID2194,EID3833,EID7678,EID2190,EID2195,EID3835,EID2191,EID2189,EID8933,EID2196,EID3834,EID3836,EID3837,EID3838,EID3839,EID7169,EID7172,EID1002,EID2192,EID2908,EID1474,EID1475,EID2907 "In 11 melanoma patients harboring BRAF mutations, one patient with a Q61K NRAS mutation acquired resistance to the BRAF inhibitor vemurafenib. Q61K and/or A146T NRAS mutations have also shown resistance to BRAF inhibitors in vitro. However, the combination of BRAF and MEK inhibitors have successfully hindered cell growth in cell lines with these mutations.|In 11 melanoma patients harboring BRAF mutations, one patient with a Q61K NRAS mutation acquired resistance to the BRAF inhibitor vemurafenib. Q61K and/or A146T NRAS mutations have also shown resistance to BRAF inhibitors in vitro. However, the combination of BRAF and MEK inhibitors have successfully hindered cell growth in cell lines with these mutations.|In a retrospective study, authors analyzed BRAF V600 mutated melanoma metastases derived from 10 patients treated with the combination of dabrafenib and trametinib for resistance mechanisms and genetic correlates of response. +An acquired resistance mechanism activating the MAPK pathway was identified in 9 tumors; BRAF amplification (n=4), MEK1/2 mutation (n=3), NRAS mutations (n=3). Among them, mutual exclusive alterations were BRAF amplification (n=4), MEK2 C125S (n=1), and NRAS Q61K (n=2).|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In a retrospective study of 44 malignant melanoma patients, NRAS Q61K was associated with acquired resistance to vemurafenib monotherapy in two patients with disease progressive tumors harboring NRAS Q61K and BRAF V600E (a known sensitizing mutation to vemurafenib) co-mutations, but no other genetic alterations.|In 11 melanoma patients harboring BRAF mutations, one patient with a Q61K NRAS mutation acquired resistance to the BRAF inhibitor vemurafenib. Q61K and/or A146T NRAS mutations have also shown resistance to BRAF inhibitors in vitro. However, the combination of BRAF and MEK inhibitors have successfully hindered cell growth in cell lines with these mutations.|Four patients participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had tumors which harbored NRAS Q61K and were wildtype for KRAS, BRAF and PIK3CA. One patient experienced partial response and three patients experienced progressive disease. The four patients whose tumors harbored NRAS Q61K included an 80 year old male treated with cetuximab and irinotecan as a 3rd line treatment who experienced progressive disease and had PFS of 6 weeks and OS of 43 weeks; a 51 year old male treated with cetuximab and ironotecan as a 3rd line therapy who experienced a partial response and had PFS of 24 weeks and OS of 54 weeks; a 64 year old male treated with cetuximab and ironotecan as a 5th line therapy who experienced progressive disease and had PFS of 8 weeks and OS of 33 weeks; and a 65 year old female treated with cetuximab, oxaliplatin and 5FU as a 2nd line therapy who experienced progressive disease and had PFS of 31 weeks and OS of 50 weeks.|One 56 year old female with advanced recurrent low grade serous ovarian cancer with NRAS Q61K mutation had a partial response to trametinib, with short follow-up.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In an in vitro study, a M249 cell line expressing BRAF V600E (a known sensitizing mutation to vemurafenib) and NRAS Q61K co-mutations, demonstrated resistance to vemurafenib treatment (GI50: > 10 �mol/L) compared to parental M249 cells expressing BRAF V600E and wild-type NRAS. Resistance was determined by assessing cell viability and phosphorylation of MAP2K1/2 and MAPK3/1.|In an in vitro study, a M249 R4 cell line expressing BRAF V600E (a known sensitizing mutation to vemurafenib) and NRAS Q61K co-mutations demonstrated acquired resistance to vemurafenib treatment. Resistance was determined by assessing cell survival.|In an in vitro study of single-cell clones derived from a cutaneous melanoma patient expressing a BRAF V600E mutation (a known sensitizing mutation to vemurafenib) and NRAS Q61K co-mutations, NRAS Q61K mutation was associated with resistance to vemurafenib treatment (IC50: >1000 nmol/L). Resistance was determined by assessing cell viability.|In an in vitro study, a PC-9 cell line expressing NRAS Q61K mutation demonstrated decreased sensitivity to erlotinib treatment compared to PC-9 cells expressing NRAS wild-type. Sensitivity was determined by performing cell growth-inhibition assays.|Established a novel mouse model for melanoma that shows for the first time that over expression of a mutant form of human N-ras (N-RasQ61K) in melanocytes results in a hyper pigmented skin phenotype and increases the formation of melanoma lesions and favors the acquisition of a metastatic behavior on an INK4a background.|Recent studies in mouse have also shown that NRAS Q61K is capable of promoting melanoma formation and cooperates with INK4A loss to accelerate tumor onset.|In-vitro study in 5 neuroblastoma cell lines (2 with NRAS Q61K mutation). The combination of mTOR and MEK Inhibitors synergistically blocked cell growth in NRAS mutant but not wild type cell lines. Single agent MEK inhibition (AZD6244/selumetinib, MEK162 or PD0325901) and single agent mTOR inhibition (Everolimus or AZD8055) also blocked cell growth in NRAS mutant cell lines, whereas single agent PI3K inhibitors or MEK Inhibitors in combination with PIK3CA/AKT inhibitors did not show synergistic effects.|In 28 out of 40 (70%) metastatic colorectal cancer tumors harboring mutations in KRAS, NRAS, BRAF, or PIK3CA and implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone. NRAS mutations were in 4/40 tumors (three Q61K, one G12D).|NRAS mutations define a distinct subset of lung cancers (∼1%) with potential sensitivity to MEK inhibitors. Although NRAS mutations are more common in current/former smokers, the types of mutations are not those classically associated with smoking.|Preclinical study in melanoma cell lines. NRAS Q61K, in addition to the BRAF V600E mutation was associated with resistance to vemurafenib but sensitivity to AZD6244 (selumetinib) in vitro in the acquired resistant cell line M249-AR4 and in the patient-derived acquired resistant cell line M376.|Preclinical study in melanoma cell lines. NRAS Q61K, in addition to the BRAF V600E mutation was associated with resistance to vemurafenib but sensitivity to AZD6244 (selumetinib) in vitro in the acquired resistant cell line M249-AR4 and in the patient-derived acquired resistant cell line M376.|Of the 4,562 patients with lung cancers, 30 showed NRAS mutations, which corresponded to 9 different amino acid substitutions. Cell lines were developed for 6 of these mutations (one harboring Q61L, two Q61R, and three Q61K mutations) and 5/6 were sensitive to MEK inhibitors selumetinib and trametinib. One Q61K line was not sensitive to these inhibitors." Colorectal Cancer,Colorectal Cancer,Melanoma,Colorectal Cancer,Colorectal Cancer,Melanoma,Melanoma,Colorectal Cancer,Ovary Serous Adenocarcinoma,Colorectal Cancer,Colorectal Cancer,Melanoma,Melanoma,Skin Melanoma,Lung Non-small Cell Carcinoma,Melanoma,Melanoma,Neuroblastoma,Colorectal Cancer,Lung Cancer,Skin Melanoma,Skin Melanoma,Lung Non-small Cell Carcinoma B,B,B,C,C,C,C,C,C,D,D,D,D,D,D,D,D,D,D,D,D,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDISPOSING,PREDISPOSING,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,,,,,,,,,,,,,,,,,,,,, ,,4,,,,4,3,2,,,,,,,4,4,3,3,3,2,2,2 SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,RESISTANCE,RESISTANCE,RESISTANCE,LIKELY_PATHOGENIC,LIKELY_PATHOGENIC,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE PubMed: Nazarian et al., 2010|PubMed: Nazarian et al., 2010|PubMed: Long et al., 2014|PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: Shi et al., 2014|PubMed: Nazarian et al., 2010|PubMed: De Roock et al., 2010|PubMed: Champer et al., 2019|PubMed: Migliardi et al., 2012|PubMed: Migliardi et al., 2012|PubMed: Nazarian et al., 2010|PubMed: Shi et al., 2012|PubMed: Romano et al., 2013|PubMed: Ohashi et al., 2012|PubMed: Ackermann et al., 2005|PubMed: Dovey et al., 2009|PubMed: Kiessling et al., 2016|PubMed: Migliardi et al., 2012|PubMed: Ohashi et al., 2013|PubMed: Atefi et al., 2011|PubMed: Atefi et al., 2011|PubMed: Ohashi et al., 2013 submitted,submitted,submitted,rejected,rejected,submitted,submitted,accepted,accepted,submitted,submitted,submitted,submitted,submitted,submitted,submitted,submitted,accepted,accepted,rejected,accepted,accepted,accepted Dactolisib,Cetuximab,Dabrafenib+Trametinib,Selumetinib,Dactolisib,Vemurafenib,Vemurafenib,Cetuximab+Chemotherapy,Trametinib,Dactolisib,Cetuximab,Vemurafenib,Vemurafenib,Vemurafenib,Erlotinib,,,Everolimus+Binimetinib,Dactolisib+Selumetinib,Trametinib+Selumetinib,Vemurafenib,Selumetinib,Trametinib+Selumetinib ,,COMBINATION,,,,,COMBINATION,,,,,,,,,,COMBINATION,COMBINATION,,,,SUBSTITUTES +1 115258744 115258744 C T 6207786 G13D GLY13ASP, RS121434596 Missense Variant 13901 4893 NRAS NM_002524.4:c.38G>A, NP_002515.1:p.Gly13Asp, NC_000001.10:g.115258744C>T, ENST00000369535.4:c.38G>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13D While the NRAS G12 region is a widely studied recurrent region in cancer, its impact on clinical action is still debated. 5.0 EID21,EID3840 Likely due to increased reliance of mutant NRAS on HSP90 for stabilization, inhibition of HSP90 by 17-AAG was shown to be effective in a patient with metastatic malignant melanoma with an NRAS G13D mutation.|In an in vitro study, an OXCO-2 cell line expressing NRAS G13D mutation demonstrated acquired resistance after low level cetuximab exposure compared to OXCO-2 parental cells expressing NRAS wild-type. Sensitivity was determined by assessing cell viability. Melanoma,Colorectal Cancer C,D SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE , 2, SENSITIVITYRESPONSE,RESISTANCE PubMed: Banerji et al., 2008|PubMed: Misale et al., 2014 accepted,submitted Tanespimycin,Cetuximab , +1 115258745 115258745 C A 8610247 G13C RS121434595, GLY13CYS Missense Variant 40471 4893 NRAS NM_002524.4:c.37G>T, NP_002515.1:p.Gly13Cys, NC_000001.10:g.115258745C>A, ENST00000369535.4:c.37G>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13C 0.0 EID2199,EID2202,EID2197,EID2200 NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone. Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer C,C,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,, ,,, SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: Migliardi et al., 2012|PubMed: Migliardi et al., 2012 rejected,rejected,submitted,submitted Dactolisib,Selumetinib,Dactolisib,Selumetinib ,,, +1 115258745 115258745 C G 4068622 G13R RS121434595, GLY13ARG Missense Variant 13899 4893 NRAS NM_002524.4:c.37G>C, NP_002515.1:p.Gly13Arg, NC_000001.10:g.115258745C>G, ENST00000369535.4:c.37G>C NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G13R 5.0 EID2205,EID2208,EID3843,EID3844,EID2204,EID3842,EID2203 NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|In a retrospective study of 30 metastatic melanoma patients, a patient harboring NRAS G13R mutation was reported to be resistant to vemurafenib treatment. The patient was initially found to harbor a BRAF V600E mutation (a known vemurafenib sensitizing mutation) and had achieved a partial response with vemurafenib monotherapy prior to acquiring resistance.|In a retrospective study of 44 malignant melanoma patients, NRAS G13R was associated with acquired resistance to vemurafenib monotherapy in one patient with disease progressive tumors harboring NRAS G13R and BRAF V600E (a known sensitizing mutation to vemurafenib) co-mutations, but no other genetic alterations.|One patient participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had a tumor which harbored NRAS G13R, was wildtype for KRAS, BRAF and PIK3CA, and had individual response data. This patient was was a 68 year old male treated with cetuximab + irinotecan as 3rd line therapy who experienced stable disease (PFS: 18 weeks; OS: 34 weeks). Authors considered stable disease as both clinical benefit and non response.|One patient participating in a large retrospective study of cetuximab in metastatic, treatment refractory colorectal cancer had a tumor which harbored NRAS G13R, was wildtype for KRAS, BRAF and PIK3CA, and had individual response data. This patient was was a 50 year old male treated with panitumumab monotherapy as 3rd line therapy (discontinued for toxic/biochemical reasons) who experienced stable disease (PFS: 22 weeks; OS: 74 weeks). Authors considered stable disease as both clinical benefit and non-response|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone. Colorectal Cancer,Colorectal Cancer,Melanoma,Melanoma,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer C,C,C,C,C,C,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,,,,, ,,,,1,1, SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE,RESISTANCE,RESISTANCE,SENSITIVITYRESPONSE PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: Rizos et al., 2014|PubMed: Shi et al., 2014|PubMed: De Roock et al., 2010|PubMed: De Roock et al., 2010|PubMed: Migliardi et al., 2012 rejected,rejected,submitted,submitted,accepted,accepted,submitted Dactolisib,Selumetinib,Vemurafenib,Vemurafenib,Cetuximab+Irinotecan,Panitumumab,Dactolisib ,,,,COMBINATION,, +1 115258747 115258747 C A 3068176 G12V RS121913237 Missense Variant 40470 4893 NRAS NM_002524.4:c.35G>T, NP_002515.1:p.Gly12Val, NC_000001.10:g.115258747C>A, ENST00000369535.4:c.35G>T NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G12V 0.0 EID4465 In an in vitro study, a DiFi colorectal cancer cell line stably expressing NRAS G12V mutation demonstrated resistance to cetuximab treatment compared to DiFi cells expressing wild-type NRAS. Resistance was determined by assessing clonogenic survival. Colorectal Cancer D SUPPORTS PREDICTIVE RESISTANCE PubMed: Kasper et al., 2013 submitted Cetuximab +1 115258747 115258747 C T 8858113 G12D RS121913237, GLY12ASP Missense Variant 39648 4893 NRAS NM_002524.4:c.35G>A, NP_002515.1:p.Gly12Asp, NC_000001.10:g.115258747C>T, ENST00000369535.4:c.35G>A NRAS ALPS4, CMNS, KRAS, N-ras, NCMS, NRAS, NRAS1, NS6 Mutations in the RAS family of proteins have frequently been observed across cancer types. The amino acid positions G12, G13 and Q61 account for the overwhelming majority of these mutations. The isoforms, despite their raw similarity, also behave very differently when expressed in non-native tissue types, likely due to differences in the C-terminal hyper-variable regions. Mis-regulation of isoform expression has been shown to be a driving event in cancer, as well as missense mutations at the three hotspots previously mentioned. While highly recurrent in cancer, targeting these RAS mutants has also been very elusive, and has not yet become common practice in the clinic. 4893 NRAS G12D 7.5 EID3693,EID2000,EID2003,EID2002,EID1998,EID3691,EID3692 In a retrospective study of 148 treatment naive metastatic colorectal cancer patients, patients with RAS mutations (n=10), including KRAS A146T, KRAS G13D, NRAS G12D and NRAS Q179*, treated with FOLFOX4 plus cetuximab were associated with decreased overall survival (16.3mo vs. 28.5mo, HR:0.43, 95% CI:0.20-0.89, P=0.020) and decreased progression free survival (7.2mo vs. 9.7mo, HR:0.56, 95% CI:0.27-1.16, P=0.11), as compared to patients with wild-type KRAS and NRAS.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|NRAS mutations have also been observed in melanoma and biliary tract, bladder, cervix, liver, lung, myeloid leukemia, ovarian, pancreatic, and thyroid cancer.|One patient participating in a large retrospective trial of cetuximab in metastatic, treatment refractory colorectal cancer had a tumor which harbored NRAS G12D and was wild type for KRAS, PIK3CA, and BRAF. This patient was a 64 year old male treated with cetuximab and irinotecan as 5th line therapy who experienced stable disease and had PFS of 64 weeks and OS of 84 weeks.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone.|In an in vitro study, an OXCO-2 cell line expressing NRAS G12D mutation demonstrated acquired resistance after low level cetuximab exposure compared to OXCO-2 parental cells expressing NRAS wild-type. Sensitivity was determined by assessing cell viability.|In 28 out of 40 (70%) metastatic colorectal cancer tumors implanted into mice, the therapeutic combination of the MEK inhibitor AZD6244 and the PI3K/mTor inhibitor BEZ235 resulted in disease stabilization. Mean tumor growth was lower in the tumors treated with AZD6244+ BEZ235 (+77% vs. +267%, P=1E-6) compared to AZD6244 alone and (+77% vs. +222%, P=0.0014) BEZ235 alone. Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer,Colorectal Cancer B,C,C,C,D,D,D SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS,SUPPORTS PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE,PREDICTIVE ,,,,,, ,,,3,,, RESISTANCE,SENSITIVITYRESPONSE,SENSITIVITYRESPONSE,RESISTANCE,SENSITIVITYRESPONSE,RESISTANCE,RESISTANCE PubMed: Kaczirek et al., 2015|PubMed: Schubbert et al., 2007|PubMed: Schubbert et al., 2007|PubMed: De Roock et al., 2010|PubMed: Migliardi et al., 2012|PubMed: Misale et al., 2014|PubMed: Migliardi et al., 2012 accepted,rejected,rejected,accepted,submitted,submitted,submitted Cetuximab,Dactolisib,Selumetinib,Cetuximab+Irinotecan,Dactolisib,Cetuximab,Cetuximab ,,,COMBINATION,,, diff --git a/example_files/civic_test_out/metadata.txt b/example_files/civic_test_out/metadata.txt index fc170d5..5eb359d 100644 --- a/example_files/civic_test_out/metadata.txt +++ b/example_files/civic_test_out/metadata.txt @@ -1,6 +1,6 @@ -CIViC query date: 2023-05-30 +CIViC query date: 2024-09-09 CIViCpy version: 3.0.0 Search mode: exact Reference genome: GRCh37 Filtered out synonymous & low impact variants based on VEP annotation -Input File: /Users/students/Documents/work_dir/querynator/example_files/example.vcf \ No newline at end of file +Input File: /home-link/zxmgc83/querynator/example_files/example.vcf \ No newline at end of file diff --git a/example_files/civic_test_out/vcf_files/civic_test_out.filtered_variants.vcf b/example_files/civic_test_out/vcf_files/civic_test_out.filtered_variants.vcf index af4f458..bea0de7 100644 --- a/example_files/civic_test_out/vcf_files/civic_test_out.filtered_variants.vcf +++ b/example_files/civic_test_out/vcf_files/civic_test_out.filtered_variants.vcf @@ -8,93 +8,93 @@ ##INFO= ##INFO= #CHROM POS ID REF ALT QUAL FILTER INFO -1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7471426 -1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6977019 -1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9270899 -1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6016378 -1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7742149 -1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8430932 -1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=4454314 -1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6145484 -1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7962649 -1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=4231866 -1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=3041185 -1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1437984 -1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8537967 -1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2837772 -1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1568206 -1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5749613 -1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7256876 -1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=3099550 -1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=1023724 -1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=9694369 -1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=9039863 -1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5111242 -1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=1843490 -1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=7601092 -1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=8596770 -1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1249634 -1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1748987 -1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=2943511 -1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=4667166 -1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=4741743 -1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5307369 -1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8103256 -1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=6322980 -1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=9938830 -1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4234228 -1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2952738 -1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=5528543 -1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9729328 -1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8702958 -1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8769993 -1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1787986 -1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1649110 -1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3724085 -1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5287325 -1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5465086 -1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4337967 -1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7718445 -1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8562107 -1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5160928 -1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1756127 -1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7082271 -7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=9008057 -7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8672053 -9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3544386 -9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=2247412 -10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=5007181 -11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings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A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=3870484 -11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=9183020 -11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=4409274 -11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=7429539 -11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1425686 -11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=5212851 -11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=6461551 -13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6953377 -13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=9275585 -13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=5621194 -13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=3266565 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=1783186 -14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=9210916 -14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=3230540 -14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=3149839 -16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=7926910 -16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=3506786 -16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2113036 -16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=5881134 -16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=6361049 -16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=5731517 -16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=3018682 -17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=3968765 -17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8778489 -17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=3667906 -17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=9093916 -17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=5912627 -18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=3998155 -19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=4085030 -20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=6021448 -20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=8476417 -21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=2003124 -22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=2663389 -X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5533193 +1 11169361 . C G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6053166 +1 11169375 . A C . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7385648 +1 11169377 . T A . . DISEASE=uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,renal_clear_cell_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6873403 +1 11174420 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=2998329 +1 11182179 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24622468,24622468,24622468,24622468,24622468,24622468,24622468;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6107666 +1 11184573 . G A . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1029281 +1 11184573 . G T . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,renal_carcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=24631838,24631838,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24631838,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4782|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6414403 +1 11184574 . A T . . DISEASE=colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,uterine_corpus_endometrial_carcinoma,skin_melanoma,cervix_carcinoma,papillary_renal_cell_carcinoma,renal_clear_cell_carcinoma,glioblastoma_multiforme;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs951621444|4781|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs951621444||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5373216 +1 11184580 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||4775|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9920047 +1 11187094 . G T . . DISEASE=thyroid_carcinoma,thyroid_carcinoma;PMID=25295501,25295501;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||2261|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||;QID=7774031 +1 11187857 . C T . . DISEASE=urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=24625776,24625776,24625776,24625776,24625776,24625776,24625776;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding|||||||||||1498|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=6478070 +1 11188519 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=26490311,26490311,26490311,26490311,26490311,26490311;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000919716|promoter_flanking_region||||||||||rs769607787||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|ANGPTL7|ENSG00000171819|Transcript|ENST00000376819|protein_coding||||||||||rs769607787|836|1||SNV|HGNC|HGNC:24078|YES|NM_021146.4||1|P1|CCDS128.1|ENSP00000366015|O43827.150||UPI0000035976|||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||28/57||||||||rs769607787||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1030844 +1 11217229 . G C . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=9400897 +1 11217230 . C A . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=1145875 +1 11217230 . C T . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=7812685 +1 11217231 . A G . . DISEASE=renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer,renal_clear_cell_carcinoma,glioblastoma_multiforme,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=5953806 +1 11217299 . A G . . DISEASE=renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma,renal_carcinoma;PMID=24631838,24631838,24631838,24631838,24631838,24631838,24631838;CSQ=G|intron_variant|MODIFIER|MTOR|ENSG00000198793|Transcript|ENST00000361445|protein_coding||19/57||||||||||-1||SNV|HGNC|HGNC:3942|YES|NM_004958.4||1|P1|CCDS127.1|ENSP00000354558|P42345.222||UPI000012ABD3||1|||||||||||||||||||||||||||||||||;QID=8794798 +1 11856378 . G A . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=18704422,18704422,18704422,18704422,18704422,18704422;CSQ=A|downstream_gene_variant|MODIFIER|NPPB|ENSG00000120937|Transcript|ENST00000376468|protein_coding|||||||||||1086|-1||SNV|HGNC|HGNC:7940|YES|NM_002521.3||1|P1|CCDS140.1|ENSP00000365651|P16860.200||UPI00000350A5|||||||||||||||||||||||||||||||||||;QID=4866096 +1 16458722 . C T . . DISEASE=cortical_senile_cataract,cortical_senile_cataract,cortical_senile_cataract;PMID=19649315,19649315,19649315;CSQ=T|upstream_gene_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA|||||||||||2226|1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||7/7||||||||||1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=1409915 +1 16464489 . C G . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=G|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript|||||||||||2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding|||||||||||4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||;QID=3787948 +1 16464489 . C T . . DISEASE=lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma,lung_squamous_cell_carcinoma;PMID=20360610,20360610,20360610,20360610,20360610,20360610,20360610;CSQ=T|downstream_gene_variant|MODIFIER|CROCCP3|ENSG00000080947|Transcript|ENST00000263511|processed_transcript||||||||||rs1173827986|2947|-1||SNV|HGNC|HGNC:29405||||1|||||||||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|NECAP2|ENSG00000157191|Transcript|ENST00000337132|protein_coding||||||||||rs1173827986|4411|1||SNV|HGNC|HGNC:25528|YES|NM_018090.5||1|P1|CCDS173.1|ENSP00000338746|Q9NVZ3.153||UPI000006F33F|Q9NVZ3-1||||||||||||||||||||||||||||||||||,T|intron_variant&non_coding_transcript_variant|MODIFIER|LINC01772|ENSG00000226029|Transcript|ENST00000457898|lncRNA||1/1||||||||rs1173827986||1||SNV|HGNC|HGNC:52562|YES|||2|||||||||||||||||||||||||||||||||||||||||;QID=4113186 +1 23235518 . G A . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=18682749,18682749,18682749;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5005615 +1 36933434 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia,acute_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23634996,23634996,23634996,23656643,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643,23634996,23656643;CSQ=A|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=3094777 +1 36933444 . T C . . DISEASE=chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia,chronic_myeloid_leukemia;PMID=23656643,23656643,23656643,23656643,23656643,23656643,23656643;CSQ=C|intron_variant|MODIFIER|GRIK3|ENSG00000163873|Transcript|ENST00000373091|protein_coding||1/15||||||||||-1||SNV|HGNC|HGNC:4581|YES|NM_000831.4||1|P1|CCDS416.1|ENSP00000362183|Q13003.191||UPI000013E311|Q13003-1||||||||||||||||||||||||||||||||||;QID=5094077 +1 43814978 . A T . . DISEASE=chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease;PMID=21228032,21228032,21228032,21228032,21228032,21228032,21228032,21228032;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=5663482 +1 43814979 . G A . . DISEASE=hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,chronic_myeloproliferative_disease,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,hemorrhagic_thrombocythemia,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,chronic_myeloproliferative_disease,myelofibrosis,myelofibrosis;PMID=18451306,18528423,18451306,19608689,18528423,19608689,20151976,20151976,18451306,18451306,18528423,23970983,18528423,18528423,20151976,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,23970983,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18528423,19608689,18451306,20151976,18451306,18528423,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976,18451306,18528423,19608689,20151976,18451306,18528423,23970983,18528423,20151976;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=3569866 +1 43815009 . G T . . DISEASE=hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer,hematologic_cancer;PMID=16834459,16834459,16834459,16834459,16834459,16834459,16834459;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000355698|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|ST3GAL3|ENSG00000126091|Transcript|ENST00000347631|protein_coding||4/11||||||||||1||SNV|HGNC|HGNC:10866|YES|NM_006279.5||5|P4|CCDS492.1|ENSP00000317192|Q11203.192||UPI000000D7A9|Q11203-1|1|||||||||||||||||||||||||||||||||,T|intron_variant&NMD_transcript_variant|MODIFIER||ENSG00000284989|Transcript|ENST00000645057|nonsense_mediated_decay||18/25||||||||||1||SNV|||YES||||P1||ENSP00000494063||A0A2R8Y4U1.10|UPI000D197852|||||||||||||||||||||||||||||||||||;QID=1618987 +1 65312347 . C A . . DISEASE=polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,polycythemia_vera,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_leukemia,polycythemia_vera,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_leukemia;PMID=16239216,21436584,21680795,16239216,19139102,19470474,19838194,21680795,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,21680795,19139102,19470474,19838194,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102,16239216,21436584,21680795,19139102,16239216,21436584,21680795,19139102,19470474,19838194,21680795,19139102;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=6045410 +1 65312382 . G A . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=22955920,22955920,22955920,22955920,22955920,22955920,22955920;CSQ=A|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=1220581 +1 65312418 . G T . . DISEASE=acute_lymphocytic_leukemia,acute_lymphocytic_leukemia,acute_lymphocytic_leukemia;PMID=20167706,20167706,20167706;CSQ=T|intron_variant|MODIFIER|DNAJC6|ENSG00000116675|Transcript|ENST00000371069|protein_coding||1/18||||||||||1||SNV|HGNC|HGNC:15469|YES|NM_001256864.2||1|P4|CCDS58004.1|ENSP00000360108|O75061.176||UPI000022AE8A|O75061-2|1|||||||||||||||||||||||||||||||||;QID=6896577 +1 115256528 . T A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,19657110,8120410,16291983,18390968,20130576,20179705,22761467,23076151,23076151,19657110,23414587,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,23076151,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23076151,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,23076151,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=9731192 +1 115256528 . T G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,19657110,23515407,23076151,23076151,19657110,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,23076151,25157968,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,23076151,25157968,23076151,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,19657110,25157968,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,23076151,19657110,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1722183 +1 115256528 . TT CA . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,20406486,25157968,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,20149136,20406486,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,20149136,20406486,25157968;CSQ=CA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=3180750 +1 115256528 . TT CC . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898;CSQ=CC|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=4823564 +1 115256529 . T A . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,12460918,18948947,23515407,20149136,20406486,20149136,20406486,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,20149136,25157968,20406486,25157968,20149136,20406486,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20149136,20406486,12460918,2674680,8120410,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,25157968,21576590,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16291983,18390968,18948947,20130576,20179705,22761467,23414587,23515407,23538902,23569304,23614898,20149136,20406486,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6124658 +1 115256529 . T C . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,2278970,23538902,23569304,23614898,3122217,16434492,19075190,22407852,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,2278970,3122217,16434492,19075190,22407852,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,25157968,21576590,23515407,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,16273091,2674680,8120410,12460918,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,2278970,3122217,16434492,19075190,22407852,25157968,21576590,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5697943 +1 115256529 . TG CT . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=CT|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=1156000 +1 115256529 . T G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,melanoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,24370118,25157968,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,24370118,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,24370118,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=2016662 +1 115256530 . G A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=23076151,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968,23076151,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3672366 +1 115256530 . G C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,25157968,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968,2674680,8120410,16291983,18390968,20130576,20179705,22761467,23414587,23538902,23569304,23614898,25157968;CSQ=C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1119177 +1 115256530 . G T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,colorectal_cancer,thyroid_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,thyroid_cancer,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,thyroid_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma,thyroid_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,thyroid_cancer,thyroid_cancer,melanoma,melanoma,colorectal_cancer,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,thyroid_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,neuroblastoma,skin_melanoma,thyroid_carcinoma,multiple_myeloma,colorectal_cancer,acute_myeloid_leukemia,uterine_corpus_endometrial_carcinoma,lung_adenocarcinoma,chronic_lymphocytic_leukemia,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,ovarian_serous_cystadenocarcinoma,nasopharynx_carcinoma,hepatocellular_carcinoma,brain_glioma,chromophobe_adenocarcinoma,glioblastoma_multiforme,adrenocortical_carcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,12460918,16273091,17384584,17699718,18948947,19255327,19773371,20619739,20736745,21305640,21729679,21829508,23406027,23515407,19657110,19657110,21107323,8120410,16291983,2674680,20130576,20179705,23414587,18390968,22761467,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,18948947,19255327,19773371,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,2674680,8120410,12460918,16273091,16291983,17384584,17699718,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,17384584,17699718,2674680,8120410,12460918,16273091,16291983,18390968,18948947,19255327,19773371,20130576,20179705,20619739,20736745,21107323,21305640,21729679,21829508,22761467,23406027,23414587,23515407,23538902,23569304,23614898,19657110,26821351,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5972779 +1 115258730 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24918823,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968,24918823,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8564411 +1 115258744 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,cancer,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,cancer,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=1564247 +1 115258744 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8743971 +1 115258744 . C T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,acute_myeloid_leukemia,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,23431193,19657110,19657110,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,23431193,25157968,18375819,23431193,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,19657110,23431193,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,23431193,16291983,18390968,20130576,20179705,23414587,19657110,2674680,8120410,25157968,18375819,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16291983,18390968,20130576,20179705,23414587,23431193,19657110,25157968,18375819,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6207786 +1 115258745 . C A . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,25157968,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,18390968,20130576,20179705,23414587,2674680,8120410,16291983,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8610247 +1 115258745 . C G . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,multiple_myeloma,acute_myeloid_leukemia,skin_melanoma,colorectal_cancer,myelodysplastic_syndrome,gastric_adenocarcinoma,medulloblastoma,non-Hodgkin_lymphoma,urinary_bladder_urothelial_carcinoma;PMID=20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,22962325,25157968,2674680,8120410,16291983,18390968,20130576,22962325,25157968,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22962325,2674680,8120410,16291983,18390968,20130576,20179705,23414587,25157968,2674680,8120410,16291983,18390968,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,8120410,16291983,18390968,2674680,20130576,20179705,23414587,22962325,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4068622 +1 115258745 . C T . . DISEASE=stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer,stomach_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=6685248 +1 115258747 . C A . . DISEASE=melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,colorectal_cancer,melanoma,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,19657110,25157968,21829508,23414587,20619739,20736745,21305640,21729679,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,2674680,8120410,16273091,16291983,17699718,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,18390968,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,2674680,8120410,16273091,16291983,17699718,19657110,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=3068176 +1 115258747 . C G . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,21305640,21729679,21829508,23414587,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,23515407,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4304909 +1 115258747 . C T . . DISEASE=melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma,melanoma,melanoma,non-small_cell_lung_carcinoma,colorectal_cancer,melanoma,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,melanoma,melanoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,melanoma,non-small_cell_lung_carcinoma,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,colorectal_cancer,skin_melanoma,acute_myeloid_leukemia,multiple_myeloma,uterine_corpus_endometrial_carcinoma,myelodysplastic_syndrome,gastric_adenocarcinoma;PMID=2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,2278970,3122217,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,20130576,20179705,20619739,20736745,21305640,21729679,21829508,16434492,19075190,23414587,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,23515407,19657110,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,20179705,20619739,20736745,21305640,21729679,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,2278970,3122217,16434492,19075190,19657110,22144181,22407852,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,2674680,8120410,12460918,16273091,16291983,17699718,18390968,18948947,20130576,20179705,20619739,20736745,21305640,21729679,21829508,23414587,23515407,22144181,22407852,25157968,2278970,3122217,16434492,19075190,19657110,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=8858113 +7 55221821 . GC AA . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=9093309 +7 55221822 . C A . . DISEASE=glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma,glioblastoma_multiforme,brain_glioma,head_and_neck_squamous_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=7486864 +9 80409488 . T C . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,18719078,19078957,21083380,1328859,2549426,22733540,22808163,22653968,22253748,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163,1328859,2549426,18719078,19078957,21083380,22253748,22653968,22733540,22808163;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=5195869 +9 80409488 . TG AA . . DISEASE=uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma,uveal_melanoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=AA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000884064|promoter_flanking_region||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||,AA|intergenic_variant|MODIFIER|||||||||||||||||||substitution|||||||||||||||||||||||||||||||||||||||||||||||;QID=7012828 +10 43609077 . CTTCCCTGAGGAGGAGAAGTGCTTCTGC C . . DISEASE=thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma,thyroid_medullary_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=-|upstream_gene_variant|MODIFIER|CAP1P2|ENSG00000232004|Transcript|ENST00000417455|processed_pseudogene|||||||||||2827|-1||deletion|HGNC|HGNC:31970|YES||||||||||||||||||||||||||||||||||||||||||||,-|intron_variant|MODIFIER|ZNF485|ENSG00000198298|Transcript|ENST00000361807|protein_coding||3/4||||||||||1||deletion|HGNC|HGNC:23440|YES|NM_145312.4||1|P1|CCDS7205.2|ENSP00000354694|Q8NCK3.156|A0A024R7T5.55|UPI00000717FE|Q8NCK3-1||||||||||||||||||||||||||||||||||;QID=4193251 +11 534289 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,skin_squamous_cell_carcinoma,salivary_gland_adenoid_cystic_carcinoma,pancreas_adenocarcinoma,lung_adenocarcinoma,colorectal_cancer,uterine_corpus_endometrial_carcinoma,gastric_adenocarcinoma,multiple_myeloma,uterine_carcinosarcoma,cervix_carcinoma,ovarian_serous_cystadenocarcinoma,breast_cancer,acute_myeloid_leukemia,esophageal_carcinoma,skin_melanoma,papillary_renal_cell_carcinoma,glioblastoma_multiforme,thyroid_carcinoma,prostate_adenocarcinoma,nasopharynx_carcinoma,myelodysplastic_syndrome,hepatocellular_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000035647|promoter||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||||SNV||||||||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|upstream_gene_variant|MODIFIER|LRRC56|ENSG00000161328|Transcript|ENST00000270115|protein_coding||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|3238|1||SNV|HGNC|HGNC:25430|YES|NM_198075.4||1|P1|CCDS7700.1|ENSP00000270115|Q8IYG6.140||UPI000007425F||1||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|downstream_gene_variant|MODIFIER||ENSG00000254739|Transcript|ENST00000526431|lncRNA||||||||||rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299|4630|1||SNV|||YES|||2||||||||||||||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||,T|missense_variant|MODERATE|HRAS|ENSG00000174775|Transcript|ENST00000311189|protein_coding|2/6||||248/1070|34/570|12/189|G/S|Ggc/Agc|rs104894229&CM053283&CM061797&COSV54236795&COSV54236828&COSV54237299||-1||SNV|HGNC|HGNC:5173|YES|NM_005343.4||1|P1|CCDS7698.1|ENSP00000309845|P01112.258|X5D945.62|UPI0000001251|P01112-1|1|deleterious(0.02)|benign(0.383)|PDB-ENSP_mappings:121p.A&PDB-ENSP_mappings:1aa9.A&PDB-ENSP_mappings:1agp.A&PDB-ENSP_mappings:1bkd.R&PDB-ENSP_mappings:1clu.A&PDB-ENSP_mappings:1crp.A&PDB-ENSP_mappings:1crq.A&PDB-ENSP_mappings:1crr.A&PDB-ENSP_mappings:1ctq.A&PDB-ENSP_mappings:1gnp.A&PDB-ENSP_mappings:1gnq.A&PDB-ENSP_mappings:1gnr.A&PDB-ENSP_mappings:1he8.B&PDB-ENSP_mappings:1iaq.A&PDB-ENSP_mappings:1iaq.B&PDB-ENSP_mappings:1iaq.C&PDB-ENSP_mappings:1ioz.A&PDB-ENSP_mappings:1jah.A&PDB-ENSP_mappings:1jai.A&PDB-ENSP_mappings:1k8r.A&PDB-ENSP_mappings:1lf0.A&PDB-ENSP_mappings:1lf5.A&PDB-ENSP_mappings:1lfd.B&PDB-ENSP_mappings:1lfd.D&PDB-ENSP_mappings:1nvu.Q&PDB-ENSP_mappings:1nvu.R&PDB-ENSP_mappings:1nvv.Q&PDB-ENSP_mappings:1nvv.R&PDB-ENSP_mappings:1nvw.Q&PDB-ENSP_mappings:1nvw.R&PDB-ENSP_mappings:1nvx.Q&PDB-ENSP_mappings:1nvx.R&PDB-ENSP_mappings:1p2s.A&PDB-ENSP_mappings:1p2t.A&PDB-ENSP_mappings:1p2u.A&PDB-ENSP_mappings:1p2v.A&PDB-ENSP_mappings:1plj.A&PDB-ENSP_mappings:1plk.A&PDB-ENSP_mappings:1pll.A&PDB-ENSP_mappings:1q21.A&PDB-ENSP_mappings:1qra.A&PDB-ENSP_mappings:1rvd.A&PDB-ENSP_mappings:1wq1.R&PDB-ENSP_mappings:1xcm.A&PDB-ENSP_mappings:1xd2.A&PDB-ENSP_mappings:1xd2.B&PDB-ENSP_mappings:1xj0.A&PDB-ENSP_mappings:1zvq.A&PDB-ENSP_mappings:1zw6.A&PDB-ENSP_mappings:221p.A&PDB-ENSP_mappings:2c5l.A&PDB-ENSP_mappings:2c5l.B&PDB-ENSP_mappings:2ce2.X&PDB-ENSP_mappings:2cl0.X&PDB-ENSP_mappings:2cl6.X&PDB-ENSP_mappings:2cl7.X&PDB-ENSP_mappings:2clc.X&PDB-ENSP_mappings:2cld.X&PDB-ENSP_mappings:2evw.X&PDB-ENSP_mappings:2lcf.A&PDB-ENSP_mappings:2lwi.A&PDB-ENSP_mappings:2n42.A&PDB-ENSP_mappings:2n46.A&PDB-ENSP_mappings:2q21.A&PDB-ENSP_mappings:2quz.A&PDB-ENSP_mappings:2rga.A&PDB-ENSP_mappings:2rgb.A&PDB-ENSP_mappings:2rgc.A&PDB-ENSP_mappings:2rgd.A&PDB-ENSP_mappings:2rge.A&PDB-ENSP_mappings:2rgg.A&PDB-ENSP_mappings:2uzi.R&PDB-ENSP_mappings:2vh5.R&PDB-ENSP_mappings:2x1v.A&Gene3D:3.40.50.300&PDB-ENSP_mappings:3ddc.A&PDB-ENSP_mappings:3i3s.R&PDB-ENSP_mappings:3k8y.A&PDB-ENSP_mappings:3k9l.A&PDB-ENSP_mappings:3k9l.B&PDB-ENSP_mappings:3k9l.C&PDB-ENSP_mappings:3k9n.A&PDB-ENSP_mappings:3kkm.A&PDB-ENSP_mappings:3kkn.A&PDB-ENSP_mappings:3kud.A&PDB-ENSP_mappings:3l8y.A&PDB-ENSP_mappings:3l8z.A&PDB-ENSP_mappings:3lbh.A&PDB-ENSP_mappings:3lbi.A&PDB-ENSP_mappings:3lbn.A&PDB-ENSP_mappings:3lo5.A&PDB-ENSP_mappings:3lo5.C&PDB-ENSP_mappings:3lo5.E&PDB-ENSP_mappings:3oiu.A&PDB-ENSP_mappings:3oiv.A&PDB-ENSP_mappings:3oiw.A&PDB-ENSP_mappings:3rry.A&PDB-ENSP_mappings:3rrz.A&PDB-ENSP_mappings:3rs0.A&PDB-ENSP_mappings:3rs2.A&PDB-ENSP_mappings:3rs3.A&PDB-ENSP_mappings:3rs4.A&PDB-ENSP_mappings:3rs5.A&PDB-ENSP_mappings:3rs7.A&PDB-ENSP_mappings:3rsl.A&PDB-ENSP_mappings:3rso.A&PDB-ENSP_mappings:3tgp.A&PDB-ENSP_mappings:421p.A&PDB-ENSP_mappings:4dlr.A&PDB-ENSP_mappings:4dls.A&PDB-ENSP_mappings:4dlt.A&PDB-ENSP_mappings:4dlu.A&PDB-ENSP_mappings:4dlv.A&PDB-ENSP_mappings:4dlw.A&PDB-ENSP_mappings:4dlx.A&PDB-ENSP_mappings:4dly.A&PDB-ENSP_mappings:4dlz.A&PDB-ENSP_mappings:4efl.A&PDB-ENSP_mappings:4efm.A&PDB-ENSP_mappings:4efn.A&PDB-ENSP_mappings:4g0n.A&PDB-ENSP_mappings:4g3x.A&PDB-ENSP_mappings:4k81.B&PDB-ENSP_mappings:4k81.D&PDB-ENSP_mappings:4k81.F&PDB-ENSP_mappings:4k81.H&PDB-ENSP_mappings:4l9s.A&PDB-ENSP_mappings:4l9w.A&PDB-ENSP_mappings:4nyi.Q&PDB-ENSP_mappings:4nyi.R&PDB-ENSP_mappings:4nyj.Q&PDB-ENSP_mappings:4nyj.R&PDB-ENSP_mappings:4nym.Q&PDB-ENSP_mappings:4nym.R&PDB-ENSP_mappings:4q21.A&PDB-ENSP_mappings:4rsg.A&PDB-ENSP_mappings:4uru.R&PDB-ENSP_mappings:4urv.R&PDB-ENSP_mappings:4urw.R&PDB-ENSP_mappings:4urx.R&PDB-ENSP_mappings:4ury.R&PDB-ENSP_mappings:4urz.R&PDB-ENSP_mappings:4us0.R&PDB-ENSP_mappings:4us1.R&PDB-ENSP_mappings:4us2.R&PDB-ENSP_mappings:4xvq.A&PDB-ENSP_mappings:4xvr.A&PDB-ENSP_mappings:521p.A&PDB-ENSP_mappings:5b2z.A&PDB-ENSP_mappings:5b30.A&PDB-ENSP_mappings:5e95.A&PDB-ENSP_mappings:5p21.A&PDB-ENSP_mappings:5vbe.A&PDB-ENSP_mappings:5vbz.A&PDB-ENSP_mappings:5vbz.B&PDB-ENSP_mappings:5vbz.C&PDB-ENSP_mappings:5wdo.A&PDB-ENSP_mappings:5wdp.A&PDB-ENSP_mappings:5wdq.A&PDB-ENSP_mappings:5wfo.Q&PDB-ENSP_mappings:5wfo.R&PDB-ENSP_mappings:5wfp.Q&PDB-ENSP_mappings:5wfp.R&PDB-ENSP_mappings:5wfq.Q&PDB-ENSP_mappings:5wfq.R&PDB-ENSP_mappings:5wfr.Q&PDB-ENSP_mappings:5wfr.R&PDB-ENSP_mappings:5wpl.A&PDB-ENSP_mappings:5wpl.D&PDB-ENSP_mappings:5wpl.G&PDB-ENSP_mappings:5wpl.J&PDB-ENSP_mappings:5x9s.A&PDB-ENSP_mappings:5zc6.A&PDB-ENSP_mappings:621p.A&PDB-ENSP_mappings:6amb.A&PDB-ENSP_mappings:6axg.B&PDB-ENSP_mappings:6axg.D&PDB-ENSP_mappings:6axg.F&PDB-ENSP_mappings:6axg.H&PDB-ENSP_mappings:6axg.J&PDB-ENSP_mappings:6axg.L&PDB-ENSP_mappings:6bvi.A&PDB-ENSP_mappings:6bvi.C&PDB-ENSP_mappings:6bvj.A&PDB-ENSP_mappings:6bvj.C&PDB-ENSP_mappings:6bvk.A&PDB-ENSP_mappings:6bvk.C&PDB-ENSP_mappings:6bvl.A&PDB-ENSP_mappings:6bvl.C&PDB-ENSP_mappings:6bvm.A&PDB-ENSP_mappings:6bvm.C&PDB-ENSP_mappings:6cuo.A&PDB-ENSP_mappings:6cuo.C&PDB-ENSP_mappings:6cup.A&PDB-ENSP_mappings:6cup.C&PDB-ENSP_mappings:6cur.A&PDB-ENSP_mappings:6cur.C&PDB-ENSP_mappings:6d55.A&PDB-ENSP_mappings:6d55.C&PDB-ENSP_mappings:6d56.A&PDB-ENSP_mappings:6d56.C&PDB-ENSP_mappings:6d59.A&PDB-ENSP_mappings:6d59.C&PDB-ENSP_mappings:6d5e.A&PDB-ENSP_mappings:6d5e.C&PDB-ENSP_mappings:6d5g.A&PDB-ENSP_mappings:6d5g.C&PDB-ENSP_mappings:6d5h.A&PDB-ENSP_mappings:6d5h.C&PDB-ENSP_mappings:6d5j.A&PDB-ENSP_mappings:6d5j.C&PDB-ENSP_mappings:6d5l.A&PDB-ENSP_mappings:6d5l.C&PDB-ENSP_mappings:6d5m.Q&PDB-ENSP_mappings:6d5m.R&PDB-ENSP_mappings:6d5v.Q&PDB-ENSP_mappings:6d5v.R&PDB-ENSP_mappings:6d5w.Q&PDB-ENSP_mappings:6d5w.R&PDB-ENSP_mappings:6dzh.A&PDB-ENSP_mappings:6dzh.B&PDB-ENSP_mappings:6dzh.C&PDB-ENSP_mappings:6e6c.A&PDB-ENSP_mappings:6e6p.A&PDB-ENSP_mappings:6e6p.B&PDB-ENSP_mappings:6e6p.C&PDB-ENSP_mappings:6mqt.A&PDB-ENSP_mappings:6mqt.B&PDB-ENSP_mappings:6mqt.C&PDB-ENSP_mappings:6mqt.D&PDB-ENSP_mappings:6mqt.E&PDB-ENSP_mappings:6mqt.F&PDB-ENSP_mappings:6mqt.G&PDB-ENSP_mappings:6mqt.H&PDB-ENSP_mappings:6ntc.A&PDB-ENSP_mappings:6ntd.A&PDB-ENSP_mappings:6q21.A&PDB-ENSP_mappings:6q21.B&PDB-ENSP_mappings:6q21.C&PDB-ENSP_mappings:6q21.D&PDB-ENSP_mappings:6v94.A&PDB-ENSP_mappings:6v94.C&PDB-ENSP_mappings:6v9f.A&PDB-ENSP_mappings:6v9f.C&PDB-ENSP_mappings:6v9j.A&PDB-ENSP_mappings:6v9j.C&PDB-ENSP_mappings:6v9l.A&PDB-ENSP_mappings:6v9l.C&PDB-ENSP_mappings:6v9m.A&PDB-ENSP_mappings:6v9m.C&PDB-ENSP_mappings:6v9n.A&PDB-ENSP_mappings:6v9n.C&PDB-ENSP_mappings:6v9o.A&PDB-ENSP_mappings:6v9o.C&PDB-ENSP_mappings:6zj0.A&PDB-ENSP_mappings:6zl3.A&PDB-ENSP_mappings:721p.A&PDB-ENSP_mappings:7dph.A&PDB-ENSP_mappings:7dpj.A&PDB-ENSP_mappings:7jhp.A&PDB-ENSP_mappings:7l0f.A&PDB-ENSP_mappings:7l0f.E&PDB-ENSP_mappings:7l0f.G&PDB-ENSP_mappings:7l0f.L&PDB-ENSP_mappings:7l0g.A&PDB-ENSP_mappings:7l0g.B&PDB-ENSP_mappings:7l0g.E&PDB-ENSP_mappings:7l0g.G&PDB-ENSP_mappings:821p.A&AFDB-ENSP_mappings:AF-P01112-F1.A&Pfam:PF00071&Prints:PR00449&PROSITE_profiles:PS51419&PROSITE_profiles:PS51420&PROSITE_profiles:PS51421&PANTHER:PTHR24070&PANTHER:PTHR24070:SF385&SMART:SM00173&SMART:SM00174&SMART:SM00175&Superfamily:SSF52540&TIGRFAM:TIGR00231&CDD:cd04138&Low_complexity_(Seg):seg|||||||||||||||||||||1KG_ALL:T:NA|pathogenic&likely_pathogenic|0&0&0&1&1&1|1&1&1&1&1&1|25741868&24033266&23757202&26619011&22499344&25157968&17384584&16372351&16835863&16170316&16443854&21850009&16329078&19255327&19773371&22683711&23406027&24129065&11150980&16478791&16881968&16969868&17054105&17412879&18039947&18978862&19206176&19371735&19382114&19669404&20660566&22087699&22317973&22926243&24224811&22495892&31394527&16155195&25914166&23429430&34013078|||||;QID=7489632 +11 8457665 . A C . . DISEASE=pancreatic_cancer,pancreatic_cancer,pancreatic_cancer;PMID=20581473,20581473,20581473;CSQ=C|intron_variant|MODIFIER|STK33|ENSG00000130413|Transcript|ENST00000687296|protein_coding||8/15||||||||||-1||SNV|HGNC|HGNC:14568|YES|NM_001352389.2|||P1|CCDS7789.1|ENSP00000509322|||UPI000004496E|||||||||||||||||||||||||||||||||||;QID=9126193 +11 32417908 . C CACCGTACA . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364,24374862,24422723,24521058,24659740,24667279,24671364;CSQ=ACCGTACA|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000955104|promoter_flanking_region||||||||||||||insertion|||||||||||||||||||||||||||||||||||||||||||||||,ACCGTACA|intron_variant|MODIFIER|WT1|ENSG00000184937|Transcript|ENST00000452863|protein_coding||3/9||||||||||-1||insertion|HGNC|HGNC:12796|YES|NM_024426.6||1|||ENSP00000415516|P19544.246|A0A0A0MT54.46|UPI0001A61559|P19544-7|1|||||||||||||||||||||||||||||||||;QID=9364077 +11 65830499 . A C . . DISEASE=chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,skin_melanoma,hepatocellular_carcinoma,breast_cancer;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3464|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=8957818 +11 65830884 . A G . . DISEASE=breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma,breast_cancer,chronic_lymphocytic_leukemia,pancreas_adenocarcinoma,myelodysplastic_syndrome,medulloblastoma,acute_myeloid_leukemia,renal_clear_cell_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|intron_variant&non_coding_transcript_variant|MODIFIER|CFL1|ENSG00000172757|Transcript|ENST00000527752|processed_transcript||1/3||||||||||-1||SNV|HGNC|HGNC:1874||||5|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNX32|ENSG00000172803|Transcript|ENST00000308342|protein_coding|||||||||||3079|1||SNV|HGNC|HGNC:26423|YES|NM_152760.3||1|P1|CCDS8113.2|ENSP00000310620|Q86XE0.141||UPI000000DAEA|Q86XE0-1||||||||||||||||||||||||||||||||||;QID=1715869 +11 67352689 . A G . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=19922504,19922504,19922504,19922504,19922504,19922504;CSQ=G|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000264515|promoter||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER||ENSG00000274251|Transcript|ENST00000613900|lncRNA|||||||||||940|1||SNV|||YES|||3|||||||||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH|POLD4|ENSG00000175482|Transcript|ENST00000312419|protein_coding||3/3||||||||||-1||SNV|HGNC|HGNC:14106|YES|NM_021173.5||1|P1|CCDS8158.1|ENSP00000311368|Q9HCU8.159|A0A024R5D7.50|UPI0000129741|Q9HCU8-1||||||||||||||||||||||||||||||||||,G|splice_donor_variant|HIGH||ENSG00000256514|Transcript|ENST00000543494|protein_coding||3/3||||||||||-1||SNV|||YES|||3|P1||ENSP00000480527||A0A087WWV3.31|UPI00001FAD87|||||||||||||||||||||||||||||||||||,G|intron_variant&non_coding_transcript_variant|MODIFIER|RAD9A|ENSG00000172613|Transcript|ENST00000622583|processed_transcript||2/3||||||||||1||SNV|HGNC|HGNC:9827||||2|||||||||||||||||||||||||||||||||||||||||;QID=2669371 +11 108218044 . A C . . DISEASE=prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer,prostate_cancer;PMID=26510020,26510020,26510020,26510020,26510020,26510020;CSQ=C|intron_variant|MODIFIER|NPAT|ENSG00000149308|Transcript|ENST00000278612|protein_coding||1/17||||||||||-1||SNV|HGNC|HGNC:7896|YES|NM_002519.3||1|P1|CCDS41710.1|ENSP00000278612|Q14207.135||UPI00001FA306|||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|ATM|ENSG00000149311|Transcript|ENST00000683488|retained_intron|||||||||||5000|1||SNV|HGNC|HGNC:795||||||||||||1|||||||||||||||||||||||||||||||||;QID=7068648 +13 48955550 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4625945 +13 49027168 . C T . . DISEASE=retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma,retinoblastoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000978453|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=5469126 +13 49037877 . G T . . DISEASE=lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma,lung_small_cell_carcinoma;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||;QID=2778514 +13 49039164 . G T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|intron_variant|MODIFIER|FNDC3A|ENSG00000102531|Transcript|ENST00000492622|protein_coding||2/25||||||||||1||SNV|HGNC|HGNC:20296|YES|NM_001079673.2||1|P4|CCDS41886.1|ENSP00000417257|Q9Y2H6.176|A0A024RDT9.39|UPI0000229601|Q9Y2H6-1||||||||||||||||||||||||||||||||||,T|downstream_gene_variant|MODIFIER|RAD17P2|ENSG00000223724|Transcript|ENST00000451754|processed_pseudogene|||||||||||4915|-1||SNV|HGNC|HGNC:9809|YES||||||||||||||||||||||||||||||||||||||||||||;QID=3628149 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=8638274 +14 105243048 . G T . . DISEASE=melanoma,melanoma,melanoma,melanoma,melanoma,melanoma;PMID=24265152,24265152,24265152,24265152,24265152,24265152;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=9543021 +14 105246551 . C T . . DISEASE=breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma,breast_cancer,breast_cancer,melanoma;PMID=23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930,23888070,26351323,24735930;CSQ=T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||;QID=4525874 +14 105246551 . C T . . DISEASE=colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,lung_adenocarcinoma,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,lung_small_cell_carcinoma,breast_cancer,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,prostate_cancer,breast_cancer,prostate_cancer,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,breast_cancer,breast_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,endometrial_adenocarcinoma,osteosarcoma,meningioma,non-small_cell_lung_carcinoma,lung_adenocarcinoma,lung_small_cell_carcinoma,colorectal_cancer,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,breast_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,non-small_cell_lung_carcinoma,colorectal_cancer,breast_cancer,breast_cancer,prostate_cancer,prostate_cancer,colorectal_cancer,lung_small_cell_carcinoma,lung_adenocarcinoma,non-small_cell_lung_carcinoma,meningioma,osteosarcoma,endometrial_adenocarcinoma,breast_cancer,prostate_cancer,breast_cancer,lung_adenocarcinoma,colorectal_cancer,thyroid_carcinoma,gastric_adenocarcinoma,prostate_adenocarcinoma,cervix_carcinoma,skin_melanoma,lung_squamous_cell_carcinoma,hepatocellular_carcinoma,head_and_neck_squamous_cell_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,18256540,18392055,18504432,18611285,20233444,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,20453058,17611497,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,17611497,17611497,23728071,17611497,18256540,18392055,22980975,18504432,18611285,24657128,20453058,21464312,22722839,23700467,23934607,22610119,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18504432,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,17611497,17611497,17611497,18256540,18392055,18504432,18611285,20233444,20453058,21464312,22610119,22722839,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,22980975,24657128,23700467,23934607,22610119,21464312,22722839,19418217,18504432,19487299,18611285,20233444,20453058,17611497,17611497,17611497,18256540,18392055,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,20233444,18392055,18504432,18611285,17611497,17611497,17611497,18256540,20453058,21464312,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,19418217,19487299,21512767,22538770,22722201,23237847,19853286,24190505,23348505,23728071,22980975,24657128,23700467,23934607,18611285,20233444,17611497,17611497,18256540,18392055,18504432,17611497,20453058,21464312,22610119,22722839,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|upstream_gene_variant|MODIFIER|BTBD6|ENSG00000184887|Transcript|ENST00000392554|protein_coding|||||||||||1982|1||SNV|HGNC|HGNC:19897|YES|NM_001387567.1||1|A2||ENSP00000376337|Q96KE9.154||UPI0000EE3528|Q96KE9-1||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|BRF1|ENSG00000185024|Transcript|ENST00000547530|protein_coding||5/17||||||||||-1||SNV|HGNC|HGNC:11551|YES|NM_001519.4||1|P1|CCDS10001.1|ENSP00000448387|Q92994.183||UPI0000136C55|Q92994-1|1|||||||||||||||||||||||||||||||||;QID=8857106 +16 3788617 . C T . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=2701476 +16 3788618 . G A . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=4063141 +16 3788618 . G C . . DISEASE=head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma,head_and_neck_squamous_cell_carcinoma,medulloblastoma,hepatocellular_carcinoma,urinary_bladder_urothelial_carcinoma,gastric_adenocarcinoma,skin_melanoma,lung_squamous_cell_carcinoma,glioblastoma_multiforme,colorectal_cancer,cervix_carcinoma,salivary_gland_adenoid_cystic_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000998516|enhancer||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,C|intron_variant|MODIFIER|CREBBP|ENSG00000005339|Transcript|ENST00000262367|protein_coding||5/30||||||||||-1||SNV|HGNC|HGNC:2348|YES|NM_004380.3||1|P1|CCDS10509.1|ENSP00000262367|Q92793.248||UPI0000000620|Q92793-1|1|||||||||||||||||||||||||||||||||;QID=5093896 +16 69745145 . G A . . DISEASE=lung_cancer,lung_cancer,lung_cancer,lung_cancer,lung_cancer;PMID=21964527,21964527,21964527,21964527,21964527;CSQ=A|downstream_gene_variant|MODIFIER|NQO1-DT|ENSG00000262136|Transcript|ENST00000575838|lncRNA|||||||||||2582|1||SNV|HGNC|HGNC:55344|YES|||5|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|NOB1|ENSG00000141101|Transcript|ENST00000268802|protein_coding||7/8||||||||||-1||SNV|HGNC|HGNC:29540|YES|NM_014062.3||1|P1|CCDS10884.1|ENSP00000268802|Q9ULX3.171||UPI0000034E10|||||||||||||||||||||||||||||||||||;QID=9938401 +16 81946260 . C T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000088553|promoter_flanking_region||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||,T|synonymous_variant|LOW|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|31/33||||3748/8666|3567/3798|1189/1265|V|gtC/gtT|||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||Gene3D:2.60.40.150&AFDB-ENSP_mappings:AF-P16885-F1.A&PIRSF:PIRSF000952&PANTHER:PTHR10336&PANTHER:PTHR10336:SF25||||||||||||||||||||||||||||||;QID=1149171 +16 81962183 . A C . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=C|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||,C|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||;QID=7634266 +16 81962183 . A T . . DISEASE=chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia,chronic_lymphocytic_leukemia;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=T|3_prime_UTR_variant|MODIFIER|PLCG2|ENSG00000197943|Transcript|ENST00000564138|protein_coding|33/33||||8164/8666|||||||1||SNV|HGNC|HGNC:9066|YES|NM_002661.5||1|P1|CCDS42204.1|ENSP00000482457|P16885.236||UPI00001411F7||1|||||||||||||||||||||||||||||||||,T|non_coding_transcript_exon_variant|MODIFIER|RN7SKP176|ENSG00000260682|Transcript|ENST00000363673|misc_RNA|1/1||||258/318|||||||1||SNV|HGNC|HGNC:45900|YES|||||||||||||||miRNA_loop|||||||||||||||||||||||||||||;QID=4202408 +17 7577022 . G A . . DISEASE=colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer,colorectal_cancer,head_and_neck_cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||70|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2616|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|intron_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay||15/20||||||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2175|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4946|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||933|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|intron_variant&non_coding_transcript_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA||5/11||||||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|intron_variant|MODIFIER|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding||5/10||||||||||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||||||||||||||||||||||||||||||||;QID=3331753 +17 7577081 . T A . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=A|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,A|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtA|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,A|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,A|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,A|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=8273467 +17 7577081 . T C . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=C|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,C|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,C|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtC|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,C|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,C|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,C|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=9063457 +17 7577081 . T G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2234|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4887|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||874|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|synonymous_variant|LOW|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||557/1758|540/1221|180/406|V|gtT/gtG|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||||PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||556/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||129|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2557|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2609/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||;QID=4523468 +17 7577082 . C G . . DISEASE=lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,lung_adenocarcinoma,breast_cancer,gastric_adenocarcinoma,head_and_neck_squamous_cell_carcinoma,skin_melanoma,lung_small_cell_carcinoma,hepatocellular_carcinoma,skin_squamous_cell_carcinoma,colorectal_cancer,pancreas_adenocarcinoma,ovarian_serous_cystadenocarcinoma,brain_glioma,acute_myeloid_leukemia,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=G|3_prime_UTR_variant&NMD_transcript_variant|MODIFIER|SENP3-EIF4A1|ENSG00000277957|Transcript|ENST00000614237|nonsense_mediated_decay|16/21||||2610/3519|||||||1|cds_start_NF|SNV|HGNC|HGNC:49182|YES|||2|P1||ENSP00000483614||A0A087X0R7.35|UPI0004620C63|||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|CD68|ENSG00000129226|Transcript|ENST00000250092|protein_coding|||||||||||2556|1||SNV|HGNC|HGNC:1693|YES|NM_001251.3||1|P1|CCDS11114.1|ENSP00000250092|P34810.180||UPI000013CCA1|P34810-1||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORD10|ENSG00000238917|Transcript|ENST00000459579|snoRNA|||||||||||130|1||SNV|HGNC|HGNC:32706|YES||||||||||||||||||||||||||||||||||||||||||||,G|missense_variant|MODERATE|EIF4A1|ENSG00000161960|Transcript|ENST00000293831|protein_coding|6/11||||558/1758|541/1221|181/406|L/V|Ctg/Gtg|||1||SNV|HGNC|HGNC:3282|YES|NM_001416.4||1|P1|CCDS11113.1|ENSP00000293831|P60842.194||UPI000000411B|P60842-1||deleterious(0)|possibly_damaging(0.773)|PDB-ENSP_mappings:2g9n.A&PDB-ENSP_mappings:2g9n.B&PDB-ENSP_mappings:2zu6.A&PDB-ENSP_mappings:2zu6.C&PDB-ENSP_mappings:2zu6.D&PDB-ENSP_mappings:2zu6.F&Gene3D:3.40.50.300&PDB-ENSP_mappings:3eiq.A&PDB-ENSP_mappings:3eiq.D&PDB-ENSP_mappings:5zbz.A&PDB-ENSP_mappings:5zc9.A&PDB-ENSP_mappings:6zmw.j&AFDB-ENSP_mappings:AF-P60842-F1.A&Pfam:PF00270&PROSITE_patterns:PS00039&PROSITE_profiles:PS51192&PANTHER:PTHR24031&PANTHER:PTHR24031:SF625&SMART:SM00487&Superfamily:SSF52540&CDD:cd18046||||||||||||||||||||||||||||||,G|non_coding_transcript_exon_variant|MODIFIER||ENSG00000264772|Transcript|ENST00000581621|lncRNA|6/12||||557/4554|||||||1||SNV|||YES|||2|||||||||||||||||||||||||||||||||||||||||,G|upstream_gene_variant|MODIFIER|SNORA67|ENSG00000277985|Transcript|ENST00000384423|snoRNA|||||||||||873|1||SNV|HGNC|HGNC:10224|YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER||ENSG00000233223|Transcript|ENST00000655859|lncRNA|||||||||||4886|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||,G|downstream_gene_variant|MODIFIER|SNORA48|ENSG00000209582|Transcript|ENST00000386847|snoRNA|||||||||||2235|1||SNV|HGNC|HGNC:32641|YES||||||||||||||||||||||||||||||||||||||||||||;QID=2445381 +18 48604787 . G T . . DISEASE=colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer,colorectal_cancer;PMID=8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767,8898652,9679244,10479724,10775259,12821112,14715079,17994767;CSQ=T|intron_variant|MODIFIER|CTIF|ENSG00000134030|Transcript|ENST00000256413|protein_coding||1/11||||||||||1||SNV|HGNC|HGNC:23925|YES|NM_014772.3||1|A1|CCDS11935.1|ENSP00000256413|O43310.155|A0A024R259.54|UPI00001397BF|O43310-1||||||||||||||||||||||||||||||||||;QID=2499035 +19 1207021 . C T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|regulatory_region_variant|MODIFIER|||RegulatoryFeature|ENSR00000581654|promoter||||||||||rs137853079&COSV58821891&COSV58822627||||SNV|||||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|synonymous_variant|LOW|STK11|ENSG00000118046|Transcript|ENST00000326873|protein_coding|1/10||||1244/3293|108/1302|36/433|Y|taC/taT|rs137853079&COSV58821891&COSV58822627||1||SNV|HGNC|HGNC:11389|YES|NM_000455.5||1|P1|CCDS45896.1|ENSP00000324856|Q15831.224|A0A0S2Z4D1.34|UPI0000136105|Q15831-1|1|||AFDB-ENSP_mappings:AF-Q15831-F1.A&PANTHER:PTHR43895&PANTHER:PTHR43895:SF25||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||,T|downstream_gene_variant|MODIFIER|HMGB2P1|ENSG00000267736|Transcript|ENST00000591146|transcribed_processed_pseudogene||||||||||rs137853079&COSV58821891&COSV58822627|3179|1||SNV|HGNC|HGNC:39174|YES||||||||||||||||||||||||1.613e-05|0|0|0|0|0.0001405|8.919e-06|0|0|0.0001405|gnomAD_FIN|1KG_ALL:T:NA|likely_benign|0&1&1|1&1&1|10362809|||||;QID=7990793 +20 57484421 . G T . . DISEASE=pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma,pancreas_adenocarcinoma,colorectal_cancer,gastric_adenocarcinoma,lung_adenocarcinoma,hepatocellular_carcinoma,breast_cancer,skin_melanoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,adrenocortical_carcinoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3538|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=3743567 +20 57484596 . A T . . DISEASE=cancer,cancer,cancer,cancer,cancer,cancer,cancer;PMID=25157968,25157968,25157968,25157968,25157968,25157968,25157968;CSQ=T|downstream_gene_variant|MODIFIER|HMGB1P1|ENSG00000124097|Transcript|ENST00000522557|protein_coding|||||||||||3363|-1||SNV|HGNC|HGNC:4993|YES||||P1||ENSP00000508468|B2RPK0.92||UPI0000073747|||||||||||||||||||||||||||||||||||;QID=4176343 +21 36231783 . G A . . DISEASE=acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia,acute_myeloid_leukemia;PMID=10508512,10508512,10508512,10508512,10508512,10508512,10508512,10508512;CSQ=A|intron_variant|MODIFIER|DOP1B|ENSG00000142197|Transcript|ENST00000691173|protein_coding||14/36||||||||||1||SNV|HGNC|HGNC:1291|YES|NM_001320714.2|||P1|CCDS13643.1|ENSP00000509598|||UPI000013D876|||||||||||||||||||||||||||||||||||;QID=7280589 +22 41565529 . G T . . DISEASE=head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma,head_and_neck_squamous_cell_carcinoma,cervix_carcinoma,lung_squamous_cell_carcinoma,esophageal_carcinoma,urinary_bladder_urothelial_carcinoma,medulloblastoma;PMID=26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011,26619011;CSQ=T|intron_variant|MODIFIER|CSDC2|ENSG00000172346|Transcript|ENST00000306149|protein_coding||1/3||||||||||1||SNV|HGNC|HGNC:30359|YES|NM_014460.4||1|P1|CCDS14019.1|ENSP00000302485|Q9Y534.149||UPI000006D88D|||||||||||||||||||||||||||||||||||,T|upstream_gene_variant|MODIFIER||ENSG00000286491|Transcript|ENST00000664614|lncRNA|||||||||||4597|-1||SNV|||YES||||||||||||||||||||||||||||||||||||||||||||;QID=9058027 +X 100611164 . C G . . DISEASE=breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer,breast_cancer;PMID=24869598,24869598,24869598,24869598,24869598,24869598,24869598;CSQ=G|intergenic_variant|MODIFIER|||||||||||||||||||SNV|||||||||||||||||||||||||||||||||||||||||||||||;QID=4307699 diff --git a/querynator/query_api/civic_api.py b/querynator/query_api/civic_api.py index 60ab0e8..43e7485 100644 --- a/querynator/query_api/civic_api.py +++ b/querynator/query_api/civic_api.py @@ -159,7 +159,7 @@ def append_to_dict(dict1, dict2): dict1[key].append(value) else: if dict1[key] == "": - dict1[key] = dict2[key] + dict1[key] = [dict2[key]] else: dict1[key] = [dict1[key], dict2[key]] @@ -417,12 +417,12 @@ def get_evidence_information_from_variant(variant_obj, diseases): "evidence_level": evidence.evidence_level, "evidence_support": evidence.evidence_direction, "evidence_type": evidence.evidence_type, - "evidence_phenotypes": ", ".join([i.name for i in evidence.phenotypes]), + "evidence_phenotypes": "+".join([i.name for i in evidence.phenotypes]), "evidence_rating": evidence.rating, "evidence_significance": evidence.significance, "evidence_source": evidence.source.name, "evidence_status": evidence.status, - "evidence_therapies": ", ".join([i.name for i in evidence.therapies]), + "evidence_therapies": "+".join([i.name for i in evidence.therapies]), "evidence_therapy_interaction_type": evidence.therapy_interaction_type, } except IndexError: diff --git a/querynator/report_scripts/combine_cgi.py b/querynator/report_scripts/combine_cgi.py index f40f3d0..006be1d 100644 --- a/querynator/report_scripts/combine_cgi.py +++ b/querynator/report_scripts/combine_cgi.py @@ -293,7 +293,9 @@ def link_biomarkers(biomarkers_df, logger): def get_highest_evidence(row, biomarkers_linked): """ - get highest associated CGI evidence of the current alteration (A-D) from the biomarkers datafrane + get highest associated CGI evidence of the current alteration (A-D) from the biomarkers dataframe. + + consider evidence matched on gene, alteration and cancer type, as well as off-label use (level A evidence for different cancer is level C evidence for this cancer). :param row: row of a pandas DataFrame :type row: pandas Series @@ -308,10 +310,8 @@ def get_highest_evidence(row, biomarkers_linked): if row["Protein Change_CGI"].startswith("*"): row["Protein Change_CGI"] = row["Protein Change_CGI"].replace("*", "\*") - # highest evidence level has lowest char value (A None return +def filter_biomarkers(biomarkers_df: pd.DataFrame, logger) -> pd.DataFrame: + """ + adapt biomarkers to only consider + - "complete" biomarkers (gene, alteration) + - matches between alteration & biomarker (gene, alteration, cancer type) + - off-label use (level A evidence for different cancer is level C evidence for this cancer) + + :biomarkers_df : the dataframe containing the cgi result 'biomarkers.tsv' + :logger : the logger + :return : the adapted biomarkers dataframe + """ + complete_biom_msk = biomarkers_df.BioM == "complete" + match_msk = biomarkers_df["Match"] == "YES" + off_label_msk = ~match_msk & (biomarkers_df["Evidence"] == "A") + filter = complete_biom_msk & (match_msk | off_label_msk) + + biomarkers_df.loc[off_label_msk, "Evidence"] = "C" + biomarkers_df["alterations_link"] = biomarkers_df["alterations_link"].astype(str) + + logger.info(f"CGI: filtered {(~filter).sum()} irrelevant biomarkers, {filter.sum()} remaining") + + return biomarkers_df.loc[filter] + + def combine_cgi(cgi_path, outdir, logger): """ Command to combine the cgi results with the vcf's VEP annotation @@ -369,19 +393,14 @@ def combine_cgi(cgi_path, outdir, logger): alterations_df = read_modify_alterations(alterations_path) merged_df = merge_alterations_vep(vep_df, alterations_df) - # link alterations in biomarkers + # link alterations in biomarkers & filter biomarkers_df = link_biomarkers(biomarkers_df, logger) - biomarkers_df.to_csv(f"{outdir}/combined_files/biomarkers_linked.tsv", sep="\t", index=False) + biomarkers_df = filter_biomarkers(biomarkers_df, logger) + biomarkers_df.to_csv(f"{outdir}/combined_files/biomarkers_linked_filtered.tsv", sep="\t", index=False) check_wildtypes(biomarkers_df, vep_df, logger) # add CGI evidence col to merged_df - - # adapt biomarkers to only consider "complete" matches between alteration & biomarker - biomarkers_df = biomarkers_df[biomarkers_df.BioM == "complete"] - # biomarkers_linked["alterations_link"] = biomarkers_linked["alterations_link"].astype(str) - biomarkers_df["alterations_link"] = biomarkers_df["alterations_link"].apply(str) - # add CGI evidence col merged_df["evidence_CGI"] = merged_df.apply(lambda x: get_highest_evidence(x, biomarkers_df), axis=1) # write merged to report dir merged_df.to_csv(f"{outdir}/combined_files/alterations_vep.tsv", sep="\t", index=False) diff --git a/querynator/report_scripts/create_report.py b/querynator/report_scripts/create_report.py index b3e26ca..47832fa 100644 --- a/querynator/report_scripts/create_report.py +++ b/querynator/report_scripts/create_report.py @@ -705,7 +705,7 @@ def create_report_htmls(outdir, basename, civic_path, logger): # read in files vep_civic_cgi_merge = pd.read_csv(f"{outdir}/combined_files/civic_cgi_vep.tsv", sep="\t") - biomarkers_df = pd.read_csv(f"{outdir}/combined_files/biomarkers_linked.tsv", sep="\t") + biomarkers_df = pd.read_csv(f"{outdir}/combined_files/biomarkers_linked_filtered.tsv", sep="\t") metadata_civic = f"{civic_path}/metadata.txt" # read reference genome from metadata file # get path to save individual reports report_path = f"{os.path.abspath(outdir)}/report/variant_reports" diff --git a/setup.py b/setup.py index af65539..7b238b9 100644 --- a/setup.py +++ b/setup.py @@ -4,7 +4,7 @@ from setuptools import find_packages, setup -VERSION = "0.5.4" +VERSION = "0.5.5" with open("README.rst") as readme_file: readme = readme_file.read()