From cd99298f611efd990315bc11d9fbfdb3ee32fe79 Mon Sep 17 00:00:00 2001 From: ggabernet Date: Thu, 14 Jan 2021 15:24:04 +0100 Subject: [PATCH] fix links --- docs/markdown/pipeline_releases.md | 26 +++++++++++++------------- 1 file changed, 13 insertions(+), 13 deletions(-) diff --git a/docs/markdown/pipeline_releases.md b/docs/markdown/pipeline_releases.md index 0302203..98a5b8f 100644 --- a/docs/markdown/pipeline_releases.md +++ b/docs/markdown/pipeline_releases.md @@ -8,17 +8,17 @@ These versions will be revised periodically and tested in our infrastructure bef | Analysis type | Pipeline | Use version | |-----------------------|-----------------------------------------------------------------------|:-----------:| -| RNAseq | [nf-core/rnaseq](nf-co.re/rnaseq/1.4.2) | 1.4.2 | +| RNAseq | [nf-core/rnaseq](https://nf-co.re/rnaseq/1.4.2) | 1.4.2 | | RNAseq DE analysis | [qbic-pipelines/rnadeseq](https://github.com/qbic-pipelines/rnadeseq) | 1.3.2 | -| WGS / WES | [nf-core/sarek](nf-co.re/sarek/2.6.1) | 2.6.1 | -| HLAtyping | [nf-core/hlatyping](nf-co.re/hlatyping/1.2.0) | 1.2.0 | -| 16S amplicon | [nf-core/ampliseq](nf-co.re/ampliseq/1.1.3) | 1.1.3 | -| Shotgun metagenomics | [nf-core/mag](nf-co.re/mag/1.1.2) | 1.1.2 | -| BCR / TCR repseq | [nf-core/bcellmagic](nf-co.re/bcellmagic/1.2.0) | 1.2.0 | -| CAGEseq | [nf-core/cageseq](nf-co.re/cageseq/1.0.2) | 1.0.2 | -| MHC immunopeptidomics | [nf-core/mhcquant](nf-co.re/mhcquant/1.6.0) | 1.6.0 | -| ATACseq | [nf-core/atacseq](nf-co.re/atacseq/1.2.1) | 1.2.1 | -| Chipseq | [nf-core/chipseq](nf-co.re/chipseq/1.2.1) | 1.2.1 | -| Epitope prediction | [nf-core/epitopeprediction](nf-co.re/epitopeprediction/1.1.0) | 1.1.0 | -| Bacterial assembly | [nf-core/bacass](nf-co.re/bacass/1.1.1) | 1.1.1 | -| RNA fusion | [nf-core/rnafusion](nf-co.re/rnafusion/1.2.0) | 1.2.0 | +| WGS / WES | [nf-core/sarek](https://nf-co.re/sarek/2.6.1) | 2.6.1 | +| HLAtyping | [nf-core/hlatyping](https://nf-co.re/hlatyping/1.2.0) | 1.2.0 | +| 16S amplicon | [nf-core/ampliseq](https://nf-co.re/ampliseq/1.1.3) | 1.1.3 | +| Shotgun metagenomics | [nf-core/mag](https://nf-co.re/mag/1.1.2) | 1.1.2 | +| BCR / TCR repseq | [nf-core/bcellmagic](https://nf-co.re/bcellmagic/1.2.0) | 1.2.0 | +| CAGEseq | [nf-core/cageseq](https://nf-co.re/cageseq/1.0.2) | 1.0.2 | +| MHC immunopeptidomics | [nf-core/mhcquant](https://nf-co.re/mhcquant/1.6.0) | 1.6.0 | +| ATACseq | [nf-core/atacseq](https://nf-co.re/atacseq/1.2.1) | 1.2.1 | +| Chipseq | [nf-core/chipseq](https://nf-co.re/chipseq/1.2.1) | 1.2.1 | +| Epitope prediction | [nf-core/epitopeprediction](https://nf-co.re/epitopeprediction/1.1.0) | 1.1.0 | +| Bacterial assembly | [nf-core/bacass](https://nf-co.re/bacass/1.1.1) | 1.1.1 | +| RNA fusion | [nf-core/rnafusion](https://nf-co.re/rnafusion/1.2.0) | 1.2.0 |