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LaMachine bootstrap.sh gives an error on six. ERROR: Cannot uninstall 'six'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall. How to fix ?? pip uninstall same error #174

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bryonie opened this issue Apr 4, 2020 · 2 comments
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@bryonie
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bryonie commented Apr 4, 2020

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@bryonie
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bryonie commented Apr 5, 2020

non-zero return code

RUNNING HANDLER [lamachine-core : lamachine-build-registry] ********************

PLAY RECAP *********************************************************************
candi : ok=686 changed=197 unreachable=0 failed=1 skipped=739 rescued=0 ignored=1

lamachine-candi-20200405_210602.log

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proycon commented Apr 5, 2020

It seems you managed to fix the six error and are running into another one now right?

Thanks for the log, it shows it now breaks on a Java version on your machine that is too new to install Nextflow (which is a dependency for certain software in LaMachine like PICCL, aNtiLoPe and nederlab-pipeline). If you are not interested in those software packages, then the simplest solution is to disable them in the installation manifest upon installation (simply remove nextflow and languagemachines-pipelines).

@proycon proycon self-assigned this Apr 5, 2020
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