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feat(workflows): add configuration for larry data subsets #630

Merged
merged 23 commits into from
Aug 17, 2024
Merged

feat(workflows): add configuration for larry data subsets #630

merged 23 commits into from
Aug 17, 2024

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@cameronraysmith cameronraysmith commented Aug 16, 2024 •
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@cameronraysmith
fix(io): increase default compression level for posterior samples
160f857 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith self-assigned this Aug 16, 2024
@cameronraysmith cameronraysmith added this to the 0.4.x milestone Aug 16, 2024
@cameronraysmith cameronraysmith linked an issue Aug 16, 2024 that may be closed by this pull request
add configuration for larry data subsets #626
Closed
@cameronraysmith
nit(io): update larry single lineage docstrings
e20f2ea 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): add larry neutrophil precursor configuration
055d1e0 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): enable execution for larry neutrophil precursor data
441d9e9 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow enhancement New feature or request python Pull requests that update Python code execute-workflow Control workflow execution on PRs and removed skip-ci Skip CI workflow labels Aug 16, 2024
@cameronraysmith
fix(io): write data sets modified on download
560e31f 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): add larry monocyte precursor configuration
168af3e 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): enable execution for larry monocyte precursor data
8464429 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith added skip-ci Skip CI workflow dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags and removed skip-ci Skip CI workflow labels Aug 17, 2024
@cameronraysmith
refactor(workflows): move all constants to constants
145a5ec 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): use overwrite cache variable to set default value
610d7cc 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): import contants in configuration
0741330 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): import contants in workflow
121381c 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): add larry multilineage configuration
0232207 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
feat(workflows): enable execution for larry multilineage data
d0321ca 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
test(constants): enable cache overwrite
7f0883b 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): load dotenv in constants
13a5313 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): log env from constants
d2ca2fc 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): import cache flag from constants
784f276 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(cid): set hydra outputs artifact name from set-variables outputs
32e400f 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): log warnings when cluster config files not found
e40270f 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
test(constants): disable cache overwrite
7e1dad7 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
fix(workflows): reenable simulated and pancreas data
cc59182 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(workflows): upload and metrics cache versions 2024.8.15.1
561ba5b 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith
chore(version): 0.4.0b1
8a79997 
Signed-off-by: Cameron Smith <cameron.ray.smith@gmail.com>
@cameronraysmith cameronraysmith marked this pull request as ready for review August 17, 2024 04:33
@cameronraysmith cameronraysmith requested a review from a team as a code owner August 17, 2024 04:33
@cameronraysmith cameronraysmith merged commit 8a79997 into beta Aug 17, 2024
20 of 21 checks passed
@cameronraysmith cameronraysmith deleted the 626-lds branch August 17, 2024 04:34
@cameronraysmith cameronraysmith removed execute-workflow Control workflow execution on PRs dev-mode Do not rebuild images and use branch name instead of git short SHA for image tags labels Aug 17, 2024
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add configuration for larry data subsets
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