diff --git a/MODULE.bazel b/MODULE.bazel index f5fefee6b..687f96355 100644 --- a/MODULE.bazel +++ b/MODULE.bazel @@ -4,7 +4,7 @@ pyrovelocity MODULE module( name = "pyrovelocity", - version = "0.2.0b22", + version = "0.2.0", compatibility_level = 1, ) diff --git a/Makefile b/Makefile index 0f4fa90b2..cd48fea6a 100644 --- a/Makefile +++ b/Makefile @@ -913,8 +913,8 @@ approve-prs: ## Approve github pull requests from bots: PR_ENTRIES="2-5 10 12-18 fi; \ done -PREVIOUS_VERSION := 0.2.0b21 -NEXT_VERSION := 0.2.0b22 +PREVIOUS_VERSION := 0.2.0b22 +NEXT_VERSION := 0.2.0 VERSION_FILES := \ pyproject.toml \ conda/colab/construct.yaml \ diff --git a/conda/colab/construct.yaml b/conda/colab/construct.yaml index ef42de36e..6746d8e35 100644 --- a/conda/colab/construct.yaml +++ b/conda/colab/construct.yaml @@ -1,5 +1,5 @@ name: pyrovelocity-colab -version: 0.2.0b22 +version: 0.2.0 channels: - pytorch diff --git a/containers/gpu.Dockerfile b/containers/gpu.Dockerfile index a95841020..b42d4b8e5 100644 --- a/containers/gpu.Dockerfile +++ b/containers/gpu.Dockerfile @@ -77,7 +77,7 @@ COPY . /root # development RUN pip install --no-deps -e . # distribution -# RUN pip install pyrovelocity==0.2.0b22 +# RUN pip install pyrovelocity==0.2.0 ARG tag ENV FLYTE_INTERNAL_IMAGE $tag diff --git a/containers/pkg.Dockerfile b/containers/pkg.Dockerfile index 6c27b5945..f09985652 100644 --- a/containers/pkg.Dockerfile +++ b/containers/pkg.Dockerfile @@ -34,7 +34,7 @@ COPY . /root # development RUN pip install --no-deps -e . # distribution -# RUN pip install pyrovelocity==0.2.0b22 +# RUN pip install pyrovelocity==0.2.0 ARG tag ENV FLYTE_INTERNAL_IMAGE $tag diff --git a/docs/source/notebooks/pyrovelocity_colab_template.ipynb b/docs/source/notebooks/pyrovelocity_colab_template.ipynb index d22ea7539..249e7356f 100644 --- a/docs/source/notebooks/pyrovelocity_colab_template.ipynb +++ b/docs/source/notebooks/pyrovelocity_colab_template.ipynb @@ -70,10 +70,11 @@ } ], "source": [ - "pyrovelocity_version = \"0.2.0b22\"\n", - "pyrovelocity_colab_script_url = \\\n", - "\"https://storage.googleapis.com/pyrovelocity/data/scripts/\" + \\\n", - "f\"pyrovelocity-colab-{pyrovelocity_version}-Linux-x86_64.sh\"\n", + "pyrovelocity_version = \"0.2.0\"\n", + "pyrovelocity_colab_script_url = (\n", + " \"https://storage.googleapis.com/pyrovelocity/data/scripts/\"\n", + " + f\"pyrovelocity-colab-{pyrovelocity_version}-Linux-x86_64.sh\"\n", + ")\n", "\n", "!pip install -q condacolab\n", "import condacolab\n", @@ -116,7 +117,7 @@ "\n", "# change the branch argument from a tag to a branch in development\n", "git clone \\\n", - "--branch beta \\\n", + "--branch main \\\n", "https://github.com/pinellolab/pyrovelocity.git" ] }, @@ -141,6 +142,7 @@ "source": [ "!pip install --user --no-deps -e pyrovelocity\n", "from IPython import get_ipython\n", + "\n", "get_ipython().kernel.do_shutdown(True)" ] }, @@ -173,6 +175,7 @@ "outputs": [], "source": [ "import pyrovelocity\n", + "\n", "print(pyrovelocity.__file__)\n", "print(pyrovelocity.__version__)" ] diff --git a/pyproject.toml b/pyproject.toml index 67172f5f4..74eef80c3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "pyrovelocity" -version = "0.2.0b22" +version = "0.2.0" packages = [{ include = "pyrovelocity", from = "src" }] description = "A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro." authors = ["pyrovelocity team"] diff --git a/scripts/conda b/scripts/conda index 40da38ea7..b57a50572 100755 --- a/scripts/conda +++ b/scripts/conda @@ -3,10 +3,11 @@ set -euo pipefail PACKAGE_NAME="pyrovelocity" -PACKAGE_VERSION="0.2.0b22" +PACKAGE_VERSION="0.2.0" CONDA_BUILD_STRING="pyhff70e4c" CONDA_BUILD_NUMBER="0" -CONDA_CHANNEL_LABEL="pyrovelocity_dev" +# CONDA_CHANNEL_LABEL="pyrovelocity_dev" +CONDA_CHANNEL_LABEL="main" VERBOSE=0 USE_COLOR=true @@ -31,7 +32,7 @@ Example: ./conda \\ --name pyrovelocity \\ - --version 0.2.0b22.dev1 \\ + --version 0.2.0.dev1 \\ --build-string pyhff70e4c \\ --build-number 0 \\ --label pyrovelocity_dev