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= ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mkdocs (==1.3.1)", "mkdocs-gen-files (==0.3.5)", "mkdocs-material (==8.4.1)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)", "mypy (==0.971)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (>=0.0.6)"] +dev = ["celery-types (==0.15.0)", "flaky (==3.7.0)", "mkdocs (==1.3.1)", "mkdocs-gen-files (==0.3.5)", "mkdocs-material (==8.4.1)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)", "mypy (==0.971)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.6)", "pytest-test-utils (>=0.0.6)"] docs = ["mkdocs (==1.3.1)", "mkdocs-gen-files (==0.3.5)", "mkdocs-material (==8.4.1)", "mkdocs-section-index (==0.3.4)", "mkdocstrings-python (==0.7.1)"] -tests = ["celery-types (>=0.11.0)", "flaky (==3.7.0)", "mypy (==0.971)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (>=0.0.6)"] +tests = ["celery-types (==0.15.0)", "flaky (==3.7.0)", "mypy (==0.971)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-celery", "pytest-cov (==3.0.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.6)", "pytest-test-utils (>=0.0.6)"] [[package]] name = "entrypoints" @@ -3526,34 +3527,36 @@ files = [ [[package]] name = "kombu" -version = "5.2.4" +version = "5.3.1" description = "Messaging library for Python." optional = true -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "kombu-5.2.4-py3-none-any.whl", hash = "sha256:8b213b24293d3417bcf0d2f5537b7f756079e3ea232a8386dcc89a59fd2361a4"}, - {file = "kombu-5.2.4.tar.gz", hash = "sha256:37cee3ee725f94ea8bb173eaab7c1760203ea53bbebae226328600f9d2799610"}, + {file = "kombu-5.3.1-py3-none-any.whl", hash = "sha256:48ee589e8833126fd01ceaa08f8a2041334e9f5894e5763c8486a550454551e9"}, + {file = "kombu-5.3.1.tar.gz", hash = "sha256:fbd7572d92c0bf71c112a6b45163153dea5a7b6a701ec16b568c27d0fd2370f2"}, ] [package.dependencies] -amqp = ">=5.0.9,<6.0.0" +amqp = ">=5.1.1,<6.0.0" +typing-extensions = {version = "*", markers = "python_version < \"3.10\""} vine = "*" [package.extras] -azureservicebus = ["azure-servicebus (>=7.0.0)"] -azurestoragequeues = ["azure-storage-queue"] -consul = ["python-consul (>=0.6.0)"] +azureservicebus = ["azure-servicebus (>=7.10.0)"] +azurestoragequeues = ["azure-identity (>=1.12.0)", "azure-storage-queue (>=12.6.0)"] +confluentkafka = ["confluent-kafka (==2.1.1)"] +consul = ["python-consul2"] librabbitmq = ["librabbitmq (>=2.0.0)"] -mongodb = ["pymongo (>=3.3.0,<3.12.1)"] +mongodb = ["pymongo (>=4.1.1)"] msgpack = ["msgpack"] pyro = ["pyro4"] qpid = ["qpid-python (>=0.26)", "qpid-tools (>=0.26)"] -redis = ["redis (>=3.4.1,!=4.0.0,!=4.0.1)"] +redis = ["redis (>=4.5.2)"] slmq = ["softlayer-messaging (>=1.0.3)"] -sqlalchemy = ["sqlalchemy"] -sqs = ["boto3 (>=1.9.12)", "pycurl (>=7.44.1,<7.45.0)", "urllib3 (>=1.26.7)"] +sqlalchemy = ["sqlalchemy (>=1.4.48,<2.1)"] +sqs = ["boto3 (>=1.26.143)", "pycurl (>=7.43.0.5)", "urllib3 (>=1.26.16)"] yaml = ["PyYAML (>=3.10)"] -zookeeper = ["kazoo (>=1.3.1)"] +zookeeper = ["kazoo (>=2.8.0)"] [[package]] name = "kubernetes" @@ -6312,18 +6315,18 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo [[package]] name = "scmrepo" -version = "1.0.2" +version = "1.0.4" description = "SCM wrapper and fsspec filesystem for Git for use in DVC" optional = true python-versions = ">=3.8" files = [ - {file = "scmrepo-1.0.2-py3-none-any.whl", hash = "sha256:d5cf8b088556036d54cb9ba93712e3e890cf45ee169a2ae86b1a84b6d39ec74c"}, - {file = "scmrepo-1.0.2.tar.gz", hash = "sha256:08babb115810ad646639c24b46b80944a2bc394635cabe2b2d85577c3e9b4550"}, + {file = "scmrepo-1.0.4-py3-none-any.whl", hash = "sha256:048ffd98ab72afb6d3dfb177e5cefe14652ea28377b4258d9dac098cd4461036"}, + {file = "scmrepo-1.0.4.tar.gz", hash = "sha256:d03278d6a86caa5c7f1e85918bc28ef69040a5e5fd04c97cc0eea611ea8be13c"}, ] [package.dependencies] asyncssh = ">=2.13.1,<3" -dulwich = ">=0.20.49" +dulwich = ">=0.21.5" fsspec = ">=2021.7.0" funcy = ">=1.14" gitpython = ">3" @@ -6333,8 +6336,8 @@ pygtrie = ">=2.3.2" shortuuid = ">=0.5.0" [package.extras] -dev = ["mock (==5.0.1)", "mypy (==0.971)", "paramiko (==3.1.0)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-asyncio (==0.18.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.12.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (==0.0.8)", "types-certifi (==2021.10.8.3)", "types-mock (==5.0.0.6)", "types-paramiko (==3.0.0.7)"] -tests = ["mock (==5.0.1)", "mypy (==0.971)", "paramiko (==3.1.0)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-asyncio (==0.18.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.12.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (==0.0.8)", "types-certifi (==2021.10.8.3)", "types-mock (==5.0.0.6)", "types-paramiko (==3.0.0.7)"] +dev = ["mock (==5.0.1)", "mypy (==0.971)", "paramiko (==3.1.0)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-asyncio (==0.18.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.12.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (==0.0.8)", "types-certifi (==2021.10.8.3)", "types-mock (==5.0.0.6)", "types-paramiko (==3.0.0.10)"] +tests = ["mock (==5.0.1)", "mypy (==0.971)", "paramiko (==3.1.0)", "pylint (==2.15.0)", "pytest (==7.2.0)", "pytest-asyncio (==0.18.3)", "pytest-cov (==3.0.0)", "pytest-docker (==0.12.0)", "pytest-mock (==3.8.2)", "pytest-sugar (==0.9.5)", "pytest-test-utils (==0.0.8)", "types-certifi (==2021.10.8.3)", "types-mock (==5.0.0.6)", "types-paramiko (==3.0.0.10)"] [[package]] name = "scvelo" @@ -6918,13 +6921,13 @@ files = [ [[package]] name = "sqltrie" -version = "0.3.1" +version = "0.7.0" description = "SQL-based prefix tree inspired by pygtrie and python-diskcache" optional = true python-versions = ">=3.8" files = [ - {file = "sqltrie-0.3.1-py3-none-any.whl", hash = "sha256:8cbb616049ab50cf543c605d0c4c72bc2eadfa94e90823227f7e01acf2ca7b69"}, - {file = "sqltrie-0.3.1.tar.gz", hash = "sha256:63d562dc90dc88f1de6bacb3c1c8796b127544f84fd670bcca64f96c92695e53"}, + {file = "sqltrie-0.7.0-py3-none-any.whl", hash = "sha256:cbb1402965e94ff79aa5bd72afce39575e857714f4185d04a922df7437d8391a"}, + {file = "sqltrie-0.7.0.tar.gz", hash = "sha256:26f2e77510bf90b74d1a22fd8b586840fb862a4690ba4a91ccc369a6e72a9bf1"}, ] [package.dependencies] @@ -7939,7 +7942,7 @@ cffi = {version = ">=1.11", markers = "platform_python_implementation == \"PyPy\ cffi = ["cffi (>=1.11)"] [extras] -dev = ["Pygments", "black", "coverage", "darglint", "dparse", "dvc-gs", "flake8", "flake8-bandit", "flake8-bugbear", "flake8-docstrings", "flake8-rst-docstrings", "hypothesis", "ipython", "isort", "jupyter-core", "mypy", "pep8-naming", "poethepoet", "pre-commit", "pre-commit-hooks", "pytest", "pytest-cov", "pytest-mock", "pyupgrade", "pyvis", "safety", "typeguard", "xdoctest"] +dev = ["Pygments", "black", "coverage", "darglint", "dparse", "dvc", "dvc-gs", "flake8", "flake8-bandit", "flake8-bugbear", "flake8-docstrings", "flake8-rst-docstrings", "hypothesis", "ipython", "isort", "jupyter-core", "mypy", "pep8-naming", "poethepoet", "pre-commit", "pre-commit-hooks", "pytest", "pytest-cov", "pytest-mock", "pyupgrade", "pyvis", "safety", "typeguard", "xdoctest"] docs = ["furo", "myst-parser", "sphinx", "sphinx-autobuild", "sphinx-click"] pipeline = ["google-cloud-aiplatform", "google-cloud-pipeline-components", "kfp", "python-dotenv"] plotting = ["annoy", "matplotlib-venn", "statannotations"] @@ -7947,4 +7950,4 @@ plotting = ["annoy", "matplotlib-venn", "statannotations"] [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.11" -content-hash = "cbe9729f83764f85f9fb53b442c559514b2dd7b1ac67479d5fd5315b71f3a9f1" +content-hash = "4724e17261796207676766ede78cb7146164efd3be10f903d4ee60e24970af73" diff --git a/pyproject.toml b/pyproject.toml index 257301154..5d23c1476 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -82,6 +82,7 @@ dparse = { version = ">=0.5.2", optional = true } pytest-cov = { version = ">=4.0.0", optional = true } pytest-mock = { version = ">=3.10.0", optional = true } poethepoet = { version = ">=0.16.0", optional = true, source = "pypi" } +dvc = { version = ">=3.0", optional = true } dvc-gs = { version = ">=2.22.1", optional = true } jupyter-core = { version = ">=5.1.3", optional = true, source = "pypi" } pyvis = { version = ">=0.3.2", optional = true } @@ -115,6 +116,7 @@ dev = [ "coverage", "darglint", "dparse", + "dvc", "dvc-gs", "flake8-bandit", "flake8-bugbear",