From 30881c7f93bfb00ea056ec5a9a382211ffd837d5 Mon Sep 17 00:00:00 2001 From: Cameron Smith Date: Fri, 16 Aug 2024 22:56:11 -0400 Subject: [PATCH] chore(version): `0.4.0b1` Signed-off-by: Cameron Smith --- MODULE.bazel | 2 +- Makefile | 4 ++-- conda/colab/construct.yaml | 12 ++++++------ containers/gpu.Dockerfile | 2 +- containers/pkg.Dockerfile | 2 +- .../notebooks/pyrovelocity_colab_template.ipynb | 2 +- pyproject.toml | 2 +- scripts/conda | 8 ++++---- 8 files changed, 17 insertions(+), 17 deletions(-) diff --git a/MODULE.bazel b/MODULE.bazel index a4172b329..c99b93222 100644 --- a/MODULE.bazel +++ b/MODULE.bazel @@ -4,7 +4,7 @@ pyrovelocity MODULE module( name = "pyrovelocity", - version = "0.3.0", + version = "0.4.0b1", compatibility_level = 1, ) diff --git a/Makefile b/Makefile index cdb06bc97..f3a84b06f 100644 --- a/Makefile +++ b/Makefile @@ -913,8 +913,8 @@ approve-prs: ## Approve github pull requests from bots: PR_ENTRIES="2-5 10 12-18 fi; \ done -PREVIOUS_VERSION := 0.3.0b7 -NEXT_VERSION := 0.3.0 +PREVIOUS_VERSION := 0.3.0 +NEXT_VERSION := 0.4.0b1 VERSION_FILES := \ pyproject.toml \ conda/colab/construct.yaml \ diff --git a/conda/colab/construct.yaml b/conda/colab/construct.yaml index 772ff1e43..62694b7c9 100644 --- a/conda/colab/construct.yaml +++ b/conda/colab/construct.yaml @@ -1,5 +1,5 @@ name: pyrovelocity-colab -version: 0.3.0 +version: 0.4.0b1 channels: - pytorch @@ -268,7 +268,7 @@ specs: - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 - jupyter_client=8.6.2=pyhd8ed1ab_0 - jupyter_core=5.7.2=py311h38be061_0 - - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1 + - jupyterlab_pygments=0.4.0b1=pyhd8ed1ab_1 - jupyterlab_widgets=3.0.11=pyhd8ed1ab_0 - jupytext=1.16.4=pyh80e38bb_0 - kernel-headers_linux-64=3.10.0=h4a8ded7_16 @@ -344,7 +344,7 @@ specs: - libparquet=15.0.2=hfd5bfe4_19_cpu - libpng=1.6.43=h2797004_0 - libprotobuf=4.25.3=h08a7969_0 - - libre2-11=2023.09.01=h5a48ba9_2 + - libre2-11=20.4.0b19.01=h5a48ba9_2 - librsvg=2.58.2=h9564881_1 - libsanitizer=12.4.0=h46f95d5_0 - libsecret=0.18.8=h329b89f_2 @@ -396,7 +396,7 @@ specs: - msal=1.30.0=pyhd8ed1ab_0 - msal_extensions=1.1.0=py311h38be061_1 - msgpack-python=1.0.8=py311h52f7536_0 - - mudata=0.3.0=pyhd8ed1ab_0 + - mudata=0.4.0b1=pyhd8ed1ab_0 - multidict=6.0.5=py311h459d7ec_0 - multipledispatch=0.6.0=pyhd8ed1ab_1 - munkres=1.1.4=pyh9f0ad1d_0 @@ -526,7 +526,7 @@ specs: - rapidfuzz=3.9.6=py311hf86e51f_0 - rav1e=0.6.6=he8a937b_2 - rdma-core=53.0=he02047a_0 - - re2=2023.09.01=h7f4b329_2 + - re2=20.4.0b19.01=h7f4b329_2 - readchar=4.2.0=pyhd8ed1ab_0 - readline=8.2=h8228510_1 - referencing=0.35.1=pyhd8ed1ab_0 @@ -604,7 +604,7 @@ specs: - typing-extensions=4.12.2=hd8ed1ab_0 - typing_extensions=4.12.2=pyha770c72_0 - typing_inspect=0.9.0=pyhd8ed1ab_0 - - tzdata=2024a=h0c530f3_0 + - tzdata=2024a=h0c530.4.0b1 - ucx=1.16.0=h1e563ba_5 - umap-learn=0.5.6=py311h38be061_0 - uritemplate=4.1.1=pyhd8ed1ab_0 diff --git a/containers/gpu.Dockerfile b/containers/gpu.Dockerfile index b271571d5..ab7111c6d 100644 --- a/containers/gpu.Dockerfile +++ b/containers/gpu.Dockerfile @@ -77,7 +77,7 @@ COPY . /root # development RUN pip install --no-deps -e . # distribution -# RUN pip install pyrovelocity==0.3.0 +# RUN pip install pyrovelocity==0.4.0b1 ARG tag ENV FLYTE_INTERNAL_IMAGE $tag diff --git a/containers/pkg.Dockerfile b/containers/pkg.Dockerfile index cb7e071e2..c81f3c81d 100644 --- a/containers/pkg.Dockerfile +++ b/containers/pkg.Dockerfile @@ -34,7 +34,7 @@ COPY . /root # development RUN pip install --no-deps -e . # distribution -# RUN pip install pyrovelocity==0.3.0 +# RUN pip install pyrovelocity==0.4.0b1 ARG tag ENV FLYTE_INTERNAL_IMAGE $tag diff --git a/docs/source/notebooks/pyrovelocity_colab_template.ipynb b/docs/source/notebooks/pyrovelocity_colab_template.ipynb index cde05e50f..5d41f8678 100644 --- a/docs/source/notebooks/pyrovelocity_colab_template.ipynb +++ b/docs/source/notebooks/pyrovelocity_colab_template.ipynb @@ -70,7 +70,7 @@ } ], "source": [ - "pyrovelocity_version = \"0.3.0\"\n", + "pyrovelocity_version = \"0.4.0b1\"\n", "pyrovelocity_colab_script_url = (\n", " \"https://storage.googleapis.com/pyrovelocity/data/scripts/\"\n", " + f\"pyrovelocity-colab-{pyrovelocity_version}-Linux-x86_64.sh\"\n", diff --git a/pyproject.toml b/pyproject.toml index 2eb53ff42..520193669 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "pyrovelocity" -version = "0.3.0" +version = "0.4.0b1" packages = [{ include = "pyrovelocity", from = "src" }] description = "A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro." authors = ["pyrovelocity team"] diff --git a/scripts/conda b/scripts/conda index 42d65e655..1e769b676 100755 --- a/scripts/conda +++ b/scripts/conda @@ -3,7 +3,7 @@ set -euo pipefail PACKAGE_NAME="pyrovelocity" -PACKAGE_VERSION="0.3.0" +PACKAGE_VERSION="0.4.0b1" CONDA_BUILD_STRING="pyhff70e4c" CONDA_BUILD_NUMBER="0" # CONDA_CHANNEL_LABEL="pyrovelocity_dev" @@ -32,7 +32,7 @@ Example: ./conda \\ --name pyrovelocity \\ - --version 0.3.0.dev1 \\ + --version 0.4.0b1.dev1 \\ --build-string pyhff70e4c \\ --build-number 0 \\ --label pyrovelocity_dev @@ -67,9 +67,9 @@ PACKAGE_SPEC="conda-forge/label/\ $CONDA_CHANNEL_LABEL::\ $PACKAGE_NAME=$PACKAGE_VERSION=$CONDA_BUILD_STRING"_"$CONDA_BUILD_NUMBER" -BLUE="\033[0;34;1m" +BLUE="\0.4.0b1;34;1m" BOLD="\033[1m" -NO_COLOR="\033[0m" +NO_COLOR="\0.4.0b1m" if [ "$USE_COLOR" = false ]; then BLUE="" BOLD=""