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10. Glossary

Paulo Pinheiro edited this page Aug 8, 2019 · 1 revision

This Glossary describes acronyms related to documents used in HADatAc. The Glossary also describes some of the high level concepts related to HADatAc documents. A more comprehensive list of term related to HADatAc are encoded as the Human-Aware Science Ontology (HAScO).

  • DA - Data Acquisition is a collection of data values with an uniform data quality type. Data acquisitions are often a collection of one of more data files although a single data file may contain data from more than one data acquisition
  • data file - A computer file containing data values
  • data quality type - The exact condition under which data values are collected by measurement, elicitation (e.g., from a human) or generation (e.g., by computer simulation). A standard operating procedure is a mechanism that laboratories use to assure that a given data acquisition process occur under a given data quality type
  • DPL - Deployment metadata file that also includes information about platforms, instruments and detectors
  • OAS - Object Access Specification metadata file that links files to studies and semantic data dictionaries
  • SDD - Semantic Data Dictionary that semantically describes the contents of data acquisition files
  • SOC - Semantic Object Collections are collections of Study Objects
  • SSD - Semantic Study Design metadata file that identifies Study Objects like subjects and samples and how they are related
  • STD - Study metadata file that describes basic properties of studies including whether they are observations or experiments
  • Study - Studies are systematic activities towards the creation and organization of knowledge, which is often derived from data through the use of data analytics
  • study object - Are things with of a named type (i.e., an entity type) that play one of more roles in a study like being subjects, samples, events and locations

Data Owner Guide

  1. Installation
    1.1. Installing for Linux (Production)
    1.2. Installing for Linux (Development)
    1.3. Installing for MacOS (Development)
    1.4. Deploying with Docker (Production)
    1.5. Deploying with Docker (Development)
    1.6. Installing for Vagrant under Windows
    1.7. Upgrading
    1.8. Starting HADatAc
    1.9. Stopping HADatAc
  2. Setting Up
    2.1. Software Configuration
    2.2. Knowledge Graph Bootstrap
    2.2.1. Knowledge Graph
    2.2.2. Bootstrap without Labkey
    2.2.3. Bootstrap with Labkey
    2.3. Config Verification
  3. Using HADatAc
    3.1. Initial Page
    3.1.1. Home Button
    3.1.2. Sandbox Mode Button
    3.2. File Ingestion
    3.2.1. Ingesting Study Content
    3.2.2. Manual Submission of Files
    3.2.3. Automatic Submission of Files
    3.2.4. Data File Operations
    3.3. Manage Working Files 3.3.1. [Create Empty Semantic File from Template]
    3.3.2. SDD Editor
    3.3.3. DD Editor
    3.4. Manage Metadata
    3.4.1. Manage Instrument Infrastructure
    3.4.2. Manage Deployments 3.4.3. Manage Studies
    3.4.4. [Manage Object Collections]
    3.4.5. Manage Streams
    3.4.6. Manage Semantic Data Dictionaries
    3.4.7. Manage Indicators
    3.5. Data Search
    3.5.1. Data Faceted Search
    3.5.2. Data Spatial Search
    3.6. Metadata Browser and Search
    3.7. Knowledge Graph Browser
    3.8. API
    3.9. Data Download
  4. Software Architecture
    4.1. Software Components
    4.2. The Human-Aware Science Ontology (HAScO)
  5. Metadata Files
    5.1. Deployment Specification (DPL)
    5.2. Study Specification (STD)
    5.3. Semantic Study Design (SSD)
    5.4. Semantic Data Dictionary (SDD)
    5.5. Stream Specification (STR)
  6. Content Evolution
    6.1. Namespace List Update
    6.2. Ontology Update
    6.3. [DPL Update]
    6.4. [SSD Update]
    6.5. SDD Update
  7. Data Governance
    7.1. Access Network
    7.2. User Status, Categories and Access Permissions
    7.3. Data and Metadata Privacy
  8. HADatAc-Supported Projects
  9. Derived Products and Technologies
  10. Glossary
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